FvH4_1g28310

Importin-5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0014648
Physical Location & Seq
Reverse (-)
20137338 .. 20137817
480 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g28310.t1

Sequence Viewer

Length: 480 bp
ATGGCTCTCGATAACATGGTCGTAGAAGATTCGCTAGATCAAACCAATTTGCAACCGCAAGTCGACGATACTAGTGGAAAAGACGAAGCTAATTCCAAGGAGGTTATCAAACCCGAGACGTCCCCCAAGCAGGAAAAGAACAAGAAGAATAAAAAGAGGAAGAAAAGAGTTGAAGTAGTGGTGGAGGAGCAGCAGCAAGTCCCGAAAACCACAGTGGCAGATGAGGAGACGAATGATGAGAGGAAGTCAAAGGTTAGTAGGGTTCTTCCTTACGGTTTGAGGCAGCATATTACGAGACACGGGTTTGATCACAAGTGGGTTGAGGAGCAGGTTCTGGAGGAGATGGTGAACAAGTGGAAGACCTACAAACTTGCCGAGGTCGCATCTGATTTGGCGGAAGCTGAATTTCACGTACTTTTCAACACCTGGGCACTTAAGGCCTACAACATATTCGGTTATCTAGAAGAATCCCCTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HEAT HEAT_2 HEAT_EZ IBN_N

Protein Analysis

160

Amino Acids

18.53

Weight (kDa)

5.67

Isoelectric Point (pI)

52.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 122
Acc36I ACCTGC 1 cut(s) 319
AccI GTMKAC 1 cut(s) 63
AciI CCGC 2 cut(s) 56, 395
AcsI RAATTY 1 cut(s) 404
AcyI GRCGYC 1 cut(s) 119
AfaI GTAC 1 cut(s) 414
AfiI CCNNNNNNNGG 1 cut(s) 130
AflII CTTAAG 1 cut(s) 434
AgsI TTSAA 2 cut(s) 173, 421
AhlI ACTAGT 1 cut(s) 71
AjnI CCWGG 1 cut(s) 425
AluBI AGCT 2 cut(s) 89, 401
AluI AGCT 2 cut(s) 89, 401
Alw26I GTCTC 3 cut(s) 110, 221, 289
AlwNI CAGNNNCTG 1 cut(s) 334
Ama87I CYCGRG 1 cut(s) 113
AoxI GGCC 1 cut(s) 438
ApeKI GCWGC 3 cut(s) 190, 193, 283
ApoI RAATTY 1 cut(s) 404
AsuHPI GGTGA 1 cut(s) 358
AvaI CYCGRG 1 cut(s) 113
BaeGI GKGCMC 1 cut(s) 433
BbsI GAAGAC 1 cut(s) 365
BbvI GCAGC 3 cut(s) 202, 205, 295
BccI CCATC 1 cut(s) 337
BciT130I CCWGG 1 cut(s) 427
BclI TGATCA 1 cut(s) 307
BcoDI GTCTC 3 cut(s) 110, 221, 289
BcuI ACTAGT 1 cut(s) 71
BfaI CTAG 4 cut(s) 35, 72, 461, 474
BfrI CTTAAG 1 cut(s) 434
BfuAI ACCTGC 1 cut(s) 319
BisI GCNGC 3 cut(s) 191, 194, 284
BlsI GCNGC 3 cut(s) 192, 195, 285
Bme1390I CCNGG 1 cut(s) 427
BmeT110I CYCGRG 1 cut(s) 113
BmrFI CCNGG 1 cut(s) 427
BmsI GCATC 1 cut(s) 392
BpiI GAAGAC 1 cut(s) 365
BpmI CTGGAG 1 cut(s) 356
BsaAI YACGTR 1 cut(s) 412
BsaHI GRCGYC 1 cut(s) 119
BsaJI CCNNGG 3 cut(s) 96, 375, 426
Bsc4I CCNNNNNNNGG 1 cut(s) 130
BseBI CCWGG 1 cut(s) 427
BseDI CCNNGG 3 cut(s) 96, 375, 426
BseLI CCNNNNNNNGG 1 cut(s) 130
BseRI GAGGAG 4 cut(s) 200, 239, 338, 353
BseSI GKGCMC 1 cut(s) 433
BseXI GCAGC 3 cut(s) 202, 205, 295
BshFI GGCC 1 cut(s) 440
BsiHKCI CYCGRG 1 cut(s) 113
BslFI GGGAC 2 cut(s) 106, 185
BslI CCNNNNNNNGG 1 cut(s) 130
BsmAI GTCTC 3 cut(s) 110, 221, 289
BsmBI CGTCTC 2 cut(s) 110, 221
BsmFI GGGAC 2 cut(s) 106, 185
BsnI GGCC 1 cut(s) 440
BsoBI CYCGRG 1 cut(s) 113
Bsp1286I GDGCHC 1 cut(s) 433
Bsp143I GATC 2 cut(s) 37, 307
BspACI CCGC 2 cut(s) 56, 395
BspANI GGCC 1 cut(s) 440
BspMI ACCTGC 1 cut(s) 319
BspTI CTTAAG 1 cut(s) 434
BssECI CCNNGG 3 cut(s) 96, 375, 426
BssMI GATC 2 cut(s) 37, 307
BssNI GRCGYC 1 cut(s) 119
BssT1I CCWWGG 1 cut(s) 96
Bst2UI CCWGG 1 cut(s) 427
Bst4CI ACNGT 2 cut(s) 214, 275
BstACI GRCGYC 1 cut(s) 119
BstAFI CTTAAG 1 cut(s) 434
BstBAI YACGTR 1 cut(s) 412
BstKTI GATC 2 cut(s) 40, 310
BstMAI GTCTC 3 cut(s) 110, 221, 289
BstMBI GATC 2 cut(s) 37, 307
BstMWI GCNNNNNNNGC 2 cut(s) 380, 437
BstNI CCWGG 1 cut(s) 427
BstSCI CCNGG 1 cut(s) 425
BstSLI GKGCMC 1 cut(s) 433
BstV1I GCAGC 3 cut(s) 202, 205, 295
BstV2I GAAGAC 1 cut(s) 365
BsuRI GGCC 1 cut(s) 440
BtsIMutI CAGTG 1 cut(s) 219
BveI ACCTGC 1 cut(s) 319
CaiI CAGNNNCTG 1 cut(s) 334
Csp6I GTAC 1 cut(s) 413
CviAII CATG 1 cut(s) 16
CviJI RGCY 4 cut(s) 5, 89, 401, 440
CviKI_1 RGCY 4 cut(s) 5, 89, 401, 440
CviQI GTAC 1 cut(s) 413
DpnI GATC 2 cut(s) 39, 309
DpnII GATC 2 cut(s) 37, 307
EciI GGCGGA 1 cut(s) 410
Eco130I CCWWGG 1 cut(s) 96
Eco147I AGGCCT 1 cut(s) 440
Eco88I CYCGRG 1 cut(s) 113
EcoRII CCWGG 1 cut(s) 425
EcoT14I CCWWGG 1 cut(s) 96
ErhI CCWWGG 1 cut(s) 96
Esp3I CGTCTC 2 cut(s) 110, 221
FaeI CATG 1 cut(s) 19
FaiI YATR 3 cut(s) 17, 288, 449
FaqI GGGAC 2 cut(s) 106, 185
FatI CATG 1 cut(s) 15
FbaI TGATCA 1 cut(s) 307
FblI GTMKAC 1 cut(s) 63
Fnu4HI GCNGC 3 cut(s) 191, 194, 284
Fsp4HI GCNGC 3 cut(s) 191, 194, 284
FspBI CTAG 4 cut(s) 35, 72, 461, 474
GluI GCNGC 3 cut(s) 191, 194, 284
GsuI CTGGAG 1 cut(s) 356
HaeIII GGCC 1 cut(s) 440
Hin1I GRCGYC 1 cut(s) 119
Hin1II CATG 1 cut(s) 19
HincII GTYRAC 1 cut(s) 64
HindII GTYRAC 1 cut(s) 64
HinfI GANTC 2 cut(s) 29, 467
HphI GGTGA 1 cut(s) 358
Hpy166II GTNNAC 2 cut(s) 64, 349
Hpy188I TCNGA 1 cut(s) 388
Hpy188III TCNNGA 4 cut(s) 8, 202, 335, 461
Hpy8I GTNNAC 2 cut(s) 64, 349
Hpy99I CGWCG 1 cut(s) 68
HpyCH4III ACNGT 2 cut(s) 214, 275
HpyCH4IV ACGT 2 cut(s) 119, 411
HpyCH4V TGCA 1 cut(s) 52
HpyF10VI GCNNNNNNNGC 2 cut(s) 380, 437
HpySE526I ACGT 2 cut(s) 119, 411
Hsp92I GRCGYC 1 cut(s) 119
Hsp92II CATG 1 cut(s) 19
Ksp22I TGATCA 1 cut(s) 307
Kzo9I GATC 2 cut(s) 37, 307
LmnI GCTCC 2 cut(s) 187, 325
LpnPI CCDG 5 cut(s) 116, 314, 320, 412, 439
Lsp1109I GCAGC 3 cut(s) 202, 205, 295
LweI GCATC 1 cut(s) 392
MaeI CTAG 4 cut(s) 35, 72, 461, 474
MaeII ACGT 2 cut(s) 119, 411
MalI GATC 2 cut(s) 39, 309
MboI GATC 2 cut(s) 37, 307
MboII GAAGA 6 cut(s) 38, 157, 172, 257, 370, 476
MhlI GDGCHC 1 cut(s) 433
MluCI AATT 3 cut(s) 46, 91, 404
MnlI CCTC 9 cut(s) 94, 150, 178, 217, 234, 273, 316, 331, 370
MseI TTAA 1 cut(s) 435
MspCI CTTAAG 1 cut(s) 434
MspR9I CCNGG 1 cut(s) 427
MvaI CCWGG 1 cut(s) 427
MwoI GCNNNNNNNGC 2 cut(s) 380, 437
NdeII GATC 2 cut(s) 37, 307
NlaIII CATG 1 cut(s) 19
NmeAIII GCCGAG 1 cut(s) 400
PceI AGGCCT 1 cut(s) 440
PfeI GAWTC 2 cut(s) 29, 467
PkrI GCNGC 3 cut(s) 192, 195, 285
Ppu21I YACGTR 1 cut(s) 412
Psp6I CCWGG 1 cut(s) 425
PspGI CCWGG 1 cut(s) 425
PstNI CAGNNNCTG 1 cut(s) 334
RsaI GTAC 1 cut(s) 414
RsaNI GTAC 1 cut(s) 413
SalI GTCGAC 1 cut(s) 62
SaqAI TTAA 1 cut(s) 435
SatI GCNGC 3 cut(s) 191, 194, 284
Sau3AI GATC 2 cut(s) 37, 307
ScrFI CCNGG 1 cut(s) 427
SduI GDGCHC 1 cut(s) 433
SfaNI GCATC 1 cut(s) 392
SmlI CTYRAG 1 cut(s) 434
SmoI CTYRAG 1 cut(s) 434
SpeI ACTAGT 1 cut(s) 71
Sse9I AATT 3 cut(s) 46, 91, 404
SseBI AGGCCT 1 cut(s) 440
SsiI CCGC 2 cut(s) 56, 395
SspMI CTAG 4 cut(s) 35, 72, 461, 474
StuI AGGCCT 1 cut(s) 440
StyD4I CCNGG 1 cut(s) 425
StyI CCWWGG 1 cut(s) 96
TaaI ACNGT 2 cut(s) 214, 275
TaiI ACGT 2 cut(s) 122, 414
TaqI TCGA 2 cut(s) 9, 63
TasI AATT 3 cut(s) 46, 91, 404
TfiI GAWTC 2 cut(s) 29, 467
Tru1I TTAA 1 cut(s) 435
Tru9I TTAA 1 cut(s) 435
TscAI CASTG 1 cut(s) 219
TseI GCWGC 3 cut(s) 190, 193, 283
TspRI CASTG 1 cut(s) 219
Vha464I CTTAAG 1 cut(s) 434
XapI RAATTY 1 cut(s) 404
XbaI TCTAGA 1 cut(s) 460
XmiI GTMKAC 1 cut(s) 63
XspI CTAG 4 cut(s) 35, 72, 461, 474
ZraI GACGTC 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.