Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0014648

Physical Location & Seq

Genomic Coordinates Forward (+)

46151854 .. 46153312

Gene Structure 1459 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG367600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGTGTGATTCACCCATCCCTCAAATGGCGTTCTCCTCACCCTTTATCGTACCCGATTCGCCAGACCAAGTCAAAGATGCTTGTGACGAGAACGAAGCTAATTCCAAGGACGTTATCATGTCCAACAAGACCACCGAGCAGACAAAAAAGAAGAGGAAGAAGAAGAAGAAGAAGACAAGGCTTGCAGAGGAAACGAAGCAAGTCGACATCAACGGACCTGAAAAAGAAAATCAATCTGATGATGAGGAACAAGACCCGAAAAACAAGAGGGTGAAAGTAGCAGCTTCACCGGCTCCAGAAGAGAACACATCCAACACCAAATCGTCTTGTGCTGGAATAACATGGAGCAAAGACGATGAGATTGTTATTTTGGGCGGCCTGATCTCGTTTCAGGGAGACGAGAGAGAGTATAAAAGCAAGGAATTTTATGAATACATAAAGAGTCGCCTCAGCCAGGGAGATTTGAACCAAGTAAGGGACAAAGTAAAATCCCTTAAGAGAAAATATATGGGGATGCAGAATCAGACGTTCTTAGAAACTTTCCAGAAGGGGCGTTACCAAGAGATGAAGGTGTTCAACTTGTCCAAAATTTATTGGGGTAAGTTTGATGCTGCTGATGATGAAAAATTAAACAACGAGAAGGAGGAAACAATACTAGTGCAGGTGGCTGACGATGAGGAGGAGGAGAATGATGAGGAGGAGGAGGAAAAGGAGGAGGAAACAATACAAGTGAAGGTGGCGGACGATGAGAAGATGATTGATGATGATGATCAGAGCAAGCCAAAGATTAGTGGATTTCTTCGTCGTGGTTTGAGAGACCATTTTCGGAGAGAGCACTTTGATCGCAGGTGGGCTGAGGAGCAGGATCTCGAGGACTTGGAGAACAAGTGGAAGGCATACAAAATTGCTGAGGCCGAATCGAATTTGGCCGAAGCCCATTTTCGTAAAGCGCTCAACTGCTGCACTCTCAAGGCCTACCGGATCTTTGGTTATCAAAATAATTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0097159 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF573

Protein Analysis

335

Amino Acids

39.05

Weight (kDa)

5.01

Isoelectric Point (pI)

56.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GeBP-like_DBD	PF04504	114 - 200	2.2e-14	Glabrous-enhancer-binding protein-like family, DBD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014648)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g28310
rosa_chinensis	RchiOBHm_Chr3g0496791
rosa_laevigata	RLG00000008047 RLG00000022502 RLG00000027947
rosa_multiflora	Rmu_sc0004684.1_g000029 Rmu_sc0013168.1_g000001 Rmu_sc0013725.1_g000002
rosa_roxburghii	Rroxscaffold_2G00136000 Rroxscaffold_6G00388700
rosa_rugosa	Rorug03G0287300
rosa_samantha	Rh3AG331500 Rh3BG343000 Rh3BG368000 Rh3CG364400 Rh3DG367600 Rh7DG330000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	652, 837
Acc36I	ACCTGC	2 cut(s)	652, 837
AccI	GTMKAC	1 cut(s)	204
AciI	CCGC	2 cut(s)	375, 740
AclWI	GGATC	2 cut(s)	873, 989
AcoI	YGGCCR	1 cut(s)	927
AcsI	RAATTY	3 cut(s)	422, 588, 922
AfaI	GTAC	1 cut(s)	51
AfeI	AGCGCT	1 cut(s)	951
AfiI	CCNNNNNNNGG	3 cut(s)	25, 454, 475
AflII	CTTAAG	1 cut(s)	494
AgsI	TTSAA	2 cut(s)	466, 577
AhlI	ACTAGT	1 cut(s)	655
AjnI	CCWGG	1 cut(s)	453
AluBI	AGCT	2 cut(s)	98, 284
AluI	AGCT	2 cut(s)	98, 284
Alw21I	GWGCWC	1 cut(s)	837
Alw26I	GTCTC	2 cut(s)	390, 810
AlwI	GGATC	2 cut(s)	873, 989
Ama87I	CYCGRG	1 cut(s)	869
Aor51HI	AGCGCT	1 cut(s)	951
AoxI	GGCC	4 cut(s)	376, 912, 927, 972
ApeKI	GCWGC	3 cut(s)	281, 611, 960
ApoI	RAATTY	3 cut(s)	422, 588, 922
Asp700I	GAANNNNTTC	1 cut(s)	572
AspLEI	GCGC	1 cut(s)	952
AspS9I	GGNCC	1 cut(s)	215
AsuHPI	GGTGA	4 cut(s)	3, 30, 279, 283
AvaI	CYCGRG	1 cut(s)	869
AvaII	GGWCC	1 cut(s)	215
BarI	GAAGNNNNNNTAC	2 cut(s)	539, 571
BbsI	GAAGAC	1 cut(s)	179
Bbv12I	GWGCWC	1 cut(s)	837
BbvCI	CCTCAGC	3 cut(s)	449, 855, 909
BbvI	GCAGC	3 cut(s)	293, 598, 947
BccI	CCATC	1 cut(s)	23
BcgI	CGANNNNNNTGC	2 cut(s)	824, 858
BciT130I	CCWGG	1 cut(s)	455
BclI	TGATCA	1 cut(s)	769
BcoDI	GTCTC	2 cut(s)	390, 810
BcuI	ACTAGT	1 cut(s)	655
BfaI	CTAG	2 cut(s)	656, 1006
BfoI	RGCGCY	1 cut(s)	953
BfrI	CTTAAG	1 cut(s)	494
BfuAI	ACCTGC	2 cut(s)	652, 837
BisI	GCNGC	4 cut(s)	282, 376, 612, 961
BlsI	GCNGC	4 cut(s)	283, 377, 613, 962
Bme1390I	CCNGG	1 cut(s)	455
Bme18I	GGWCC	1 cut(s)	215
BmeT110I	CYCGRG	1 cut(s)	869
BmgT120I	GGNCC	1 cut(s)	215
BmiI	GGNNCC	1 cut(s)	294
BmrFI	CCNGG	1 cut(s)	455
BmsI	GCATC	3 cut(s)	67, 504, 598
BpiI	GAAGAC	1 cut(s)	179
BpmI	CTGGAG	1 cut(s)	279
Bpu10I	CCTNAGC	3 cut(s)	449, 855, 909
BpuEI	CTTGAG	1 cut(s)	953
BsaBI	GATNNNNATC	1 cut(s)	768
BsaI	GGTCTC	1 cut(s)	810
BsaJI	CCNNGG	2 cut(s)	105, 454
BsaWI	WCCGGW	1 cut(s)	978
BsaXI	ACNNNNNCTCC	2 cut(s)	872, 902
Bsc4I	CCNNNNNNNGG	3 cut(s)	25, 454, 475
Bse118I	RCCGGY	1 cut(s)	289
Bse8I	GATNNNNATC	1 cut(s)	768
BseBI	CCWGG	1 cut(s)	455
BseDI	CCNNGG	2 cut(s)	105, 454
BseGI	GGATG	3 cut(s)	15, 308, 519
BseJI	GATNNNNATC	1 cut(s)	768
BseLI	CCNNNNNNNGG	3 cut(s)	25, 454, 475
BseMII	CTCAG	3 cut(s)	463, 846, 900
BseRI	GAGGAG	9 cut(s)	25, 692, 695, 698, 710, 713, 716, 728, 872
BseXI	GCAGC	3 cut(s)	293, 598, 947
BsgI	GTGCAG	2 cut(s)	680, 946
BshFI	GGCC	4 cut(s)	378, 914, 929, 974
BsiHKAI	GWGCWC	1 cut(s)	837
BsiHKCI	CYCGRG	1 cut(s)	869
BsiSI	CCGG	2 cut(s)	290, 979
BslFI	GGGAC	1 cut(s)	491
BslI	CCNNNNNNNGG	3 cut(s)	25, 454, 475
BsmAI	GTCTC	2 cut(s)	390, 810
BsmBI	CGTCTC	1 cut(s)	390
BsmFI	GGGAC	1 cut(s)	491
BsnI	GGCC	4 cut(s)	378, 914, 929, 974
Bso31I	GGTCTC	1 cut(s)	810
BsoBI	CYCGRG	1 cut(s)	869
Bsp1286I	GDGCHC	1 cut(s)	837
Bsp143I	GATC	5 cut(s)	381, 769, 841, 865, 981
BspACI	CCGC	2 cut(s)	375, 740
BspANI	GGCC	4 cut(s)	378, 914, 929, 974
BspCNI	CTCAG	3 cut(s)	462, 847, 901
BspLI	GGNNCC	1 cut(s)	294
BspMI	ACCTGC	2 cut(s)	652, 837
BspPI	GGATC	2 cut(s)	873, 989
BspTI	CTTAAG	1 cut(s)	494
BspTNI	GGTCTC	1 cut(s)	810
BsrFI	RCCGGY	1 cut(s)	289
BssAI	RCCGGY	1 cut(s)	289
BssECI	CCNNGG	2 cut(s)	105, 454
BssMI	GATC	5 cut(s)	381, 769, 841, 865, 981
BssT1I	CCWWGG	1 cut(s)	105
Bst2UI	CCWGG	1 cut(s)	455
Bst6I	CTCTTC	2 cut(s)	146, 294
BstAFI	CTTAAG	1 cut(s)	494
BstC8I	GCNNGC	2 cut(s)	183, 779
BstDEI	CTNAG	4 cut(s)	449, 532, 855, 909
BstENI	CCTNNNNNAGG	1 cut(s)	452
BstF5I	GGATG	3 cut(s)	15, 308, 519
BstH2I	RGCGCY	1 cut(s)	953
BstHHI	GCGC	1 cut(s)	952
BstKTI	GATC	5 cut(s)	384, 772, 844, 868, 984
BstMAI	GTCTC	2 cut(s)	390, 810
BstMBI	GATC	5 cut(s)	381, 769, 841, 865, 981
BstMWI	GCNNNNNNNGC	1 cut(s)	290
BstNI	CCWGG	1 cut(s)	455
BstSCI	CCNGG	1 cut(s)	453
BstV1I	GCAGC	3 cut(s)	293, 598, 947
BstV2I	GAAGAC	1 cut(s)	179
BstX2I	RGATCY	2 cut(s)	865, 981
BstYI	RGATCY	2 cut(s)	865, 981
BsuRI	GGCC	4 cut(s)	378, 914, 929, 974
BtsCI	GGATG	3 cut(s)	15, 308, 519
BveI	ACCTGC	2 cut(s)	652, 837
Cac8I	GCNNGC	2 cut(s)	183, 779
CfoI	GCGC	1 cut(s)	952
Cfr10I	RCCGGY	1 cut(s)	289
Cfr13I	GGNCC	1 cut(s)	215
Csp6I	GTAC	1 cut(s)	50
CviAII	CATG	2 cut(s)	118, 342
CviQI	GTAC	1 cut(s)	50
DdeI	CTNAG	4 cut(s)	449, 532, 855, 909
DpnI	GATC	5 cut(s)	383, 771, 843, 867, 983
DpnII	GATC	5 cut(s)	381, 769, 841, 865, 981
EaeI	YGGCCR	1 cut(s)	927
Eam1104I	CTCTTC	2 cut(s)	146, 294
EarI	CTCTTC	2 cut(s)	146, 294
EciI	GGCGGA	1 cut(s)	755
Eco130I	CCWWGG	1 cut(s)	105
Eco147I	AGGCCT	1 cut(s)	974
Eco31I	GGTCTC	1 cut(s)	810
Eco47I	GGWCC	1 cut(s)	215
Eco47III	AGCGCT	1 cut(s)	951
Eco88I	CYCGRG	1 cut(s)	869
EcoNI	CCTNNNNNAGG	1 cut(s)	452
EcoRII	CCWGG	1 cut(s)	453
EcoT14I	CCWWGG	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	105
Esp3I	CGTCTC	1 cut(s)	390
FaeI	CATG	2 cut(s)	121, 345
FaiI	YATR	8 cut(s)	119, 343, 411, 429, 437, 507, 509, 898
FaqI	GGGAC	1 cut(s)	491
FatI	CATG	2 cut(s)	117, 341
FbaI	TGATCA	1 cut(s)	769
FblI	GTMKAC	1 cut(s)	204
Fnu4HI	GCNGC	4 cut(s)	282, 376, 612, 961
FokI	GGATG	3 cut(s)	2, 295, 526
Fsp4HI	GCNGC	4 cut(s)	282, 376, 612, 961
FspBI	CTAG	2 cut(s)	656, 1006
GlaI	GCGC	1 cut(s)	951
GluI	GCNGC	4 cut(s)	282, 376, 612, 961
GsuI	CTGGAG	1 cut(s)	279
HaeII	RGCGCY	1 cut(s)	953
HaeIII	GGCC	4 cut(s)	378, 914, 929, 974
HapII	CCGG	2 cut(s)	290, 979
HhaI	GCGC	1 cut(s)	952
Hin1II	CATG	2 cut(s)	121, 345
Hin6I	GCGC	1 cut(s)	950
HinP1I	GCGC	1 cut(s)	950
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HinfI	GANTC	5 cut(s)	8, 56, 442, 520, 917
HpaII	CCGG	2 cut(s)	290, 979
HphI	GGTGA	4 cut(s)	3, 30, 279, 283
Hpy166II	GTNNAC	1 cut(s)	205
Hpy188I	TCNGA	4 cut(s)	238, 525, 774, 828
Hpy188III	TCNNGA	3 cut(s)	296, 544, 869
Hpy8I	GTNNAC	1 cut(s)	205
Hpy99I	CGWCG	1 cut(s)	807
HpyAV	CCTTC	5 cut(s)	541, 562, 634, 727, 886
HpyCH4IV	ACGT	2 cut(s)	111, 527
HpyCH4V	TGCA	4 cut(s)	185, 517, 661, 963
HpyF10VI	GCNNNNNNNGC	1 cut(s)	290
HpyF3I	CTNAG	4 cut(s)	449, 532, 855, 909
HpySE526I	ACGT	2 cut(s)	111, 527
Hsp92II	CATG	2 cut(s)	121, 345
HspAI	GCGC	1 cut(s)	950
Ksp22I	TGATCA	1 cut(s)	769
Kzo9I	GATC	5 cut(s)	381, 769, 841, 865, 981
LmnI	GCTCC	3 cut(s)	298, 345, 859
Lsp1109I	GCAGC	3 cut(s)	293, 598, 947
LweI	GCATC	3 cut(s)	67, 504, 598
MaeI	CTAG	2 cut(s)	656, 1006
MaeII	ACGT	2 cut(s)	111, 527
MaeIII	GTNAC	2 cut(s)	83, 554
MalI	GATC	5 cut(s)	383, 771, 843, 867, 983
MboI	GATC	5 cut(s)	381, 769, 841, 865, 981
MflI	RGATCY	2 cut(s)	865, 981
MhlI	GDGCHC	1 cut(s)	837
MluCI	AATT	7 cut(s)	100, 422, 588, 626, 903, 922, 1000
MlyI	GAGTC	1 cut(s)	451
MmeI	TCCRAC	2 cut(s)	147, 336
MroXI	GAANNNNTTC	1 cut(s)	572
MseI	TTAA	2 cut(s)	495, 629
MspCI	CTTAAG	1 cut(s)	494
MspI	CCGG	2 cut(s)	290, 979
MspR9I	CCNGG	1 cut(s)	455
MvaI	CCWGG	1 cut(s)	455
MwoI	GCNNNNNNNGC	1 cut(s)	290
NdeII	GATC	5 cut(s)	381, 769, 841, 865, 981
NlaIII	CATG	2 cut(s)	121, 345
NlaIV	GGNNCC	1 cut(s)	294
NmuCI	GTSAC	1 cut(s)	83
PaeR7I	CTCGAG	1 cut(s)	869
PaqCI	CACCTGC	2 cut(s)	652, 837
PceI	AGGCCT	1 cut(s)	974
PdmI	GAANNNNTTC	1 cut(s)	572
PfeI	GAWTC	4 cut(s)	8, 56, 520, 917
PflFI	GACNNNGTC	1 cut(s)	68
PkrI	GCNGC	4 cut(s)	283, 377, 613, 962
PleI	GAGTC	1 cut(s)	450
PpsI	GAGTC	1 cut(s)	450
Psp6I	CCWGG	1 cut(s)	453
PspGI	CCWGG	1 cut(s)	453
PspN4I	GGNNCC	1 cut(s)	294
PspPI	GGNCC	1 cut(s)	215
PsuI	RGATCY	2 cut(s)	865, 981
PsyI	GACNNNGTC	1 cut(s)	68
RsaI	GTAC	1 cut(s)	51
RsaNI	GTAC	1 cut(s)	50
SalI	GTCGAC	1 cut(s)	203
SaqAI	TTAA	2 cut(s)	495, 629
SatI	GCNGC	4 cut(s)	282, 376, 612, 961
Sau3AI	GATC	5 cut(s)	381, 769, 841, 865, 981
Sau96I	GGNCC	1 cut(s)	215
SchI	GAGTC	1 cut(s)	451
ScrFI	CCNGG	1 cut(s)	455
SduI	GDGCHC	1 cut(s)	837
SetI	ASST	9 cut(s)	100, 114, 220, 286, 530, 573, 666, 738, 851
SfaNI	GCATC	3 cut(s)	67, 504, 598
Sfr274I	CTCGAG	1 cut(s)	869
SinI	GGWCC	1 cut(s)	215
SlaI	CTCGAG	1 cut(s)	869
SmlI	CTYRAG	3 cut(s)	494, 869, 968
SmoI	CTYRAG	3 cut(s)	494, 869, 968
SpeI	ACTAGT	1 cut(s)	655
Sse9I	AATT	7 cut(s)	100, 422, 588, 626, 903, 922, 1000
SseBI	AGGCCT	1 cut(s)	974
SsiI	CCGC	2 cut(s)	375, 740
SspMI	CTAG	2 cut(s)	656, 1006
StuI	AGGCCT	1 cut(s)	974
StyD4I	CCNGG	1 cut(s)	453
StyI	CCWWGG	1 cut(s)	105
TaiI	ACGT	2 cut(s)	114, 530
TaqI	TCGA	3 cut(s)	204, 870, 920
TasI	AATT	7 cut(s)	100, 422, 588, 626, 903, 922, 1000
TauI	GCSGC	1 cut(s)	378
TfiI	GAWTC	4 cut(s)	8, 56, 520, 917
Tru1I	TTAA	2 cut(s)	495, 629
Tru9I	TTAA	2 cut(s)	495, 629
TseFI	GTSAC	1 cut(s)	83
TseI	GCWGC	3 cut(s)	281, 611, 960
Tsp45I	GTSAC	1 cut(s)	83
TspDTI	ATGAA	3 cut(s)	444, 581, 636
TspGWI	ACGGA	1 cut(s)	228
Tth111I	GACNNNGTC	1 cut(s)	68
Vha464I	CTTAAG	1 cut(s)	494
VpaK11BI	GGWCC	1 cut(s)	215
XagI	CCTNNNNNAGG	1 cut(s)	452
XapI	RAATTY	3 cut(s)	422, 588, 922
XcmI	CCANNNNNNNNNTGG	1 cut(s)	22
XhoI	CTCGAG	1 cut(s)	869
XmiI	GTMKAC	1 cut(s)	204
XmnI	GAANNNNTTC	1 cut(s)	572
XspI	CTAG	2 cut(s)	656, 1006

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.