Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0014648

Physical Location & Seq

Genomic Coordinates Forward (+)

45870460 .. 45908860

Gene Structure 38401 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG368000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGCGTTCTCCTCACCCTTTATCGTACCCGATTCGCCAGACCAAGTCAAAGATGCTTGTTACGAGAACGAAGCTAATTCCAAGGACGTTATCATGTCCAACAAGACCACCGAGCAGACAAAAAAGAAGAGGAAGAAGAAGAAGAAGAAGAAGACAAGGCTTGCAGAGGAGACGAAGCAAGTCGACATCAACGGACCTGAAAAAGAAAATCAATCTGCTGATGAGGAACAAGACCCGAAAAACAAGAGGGTGAAAGTAGCAGCTTCACCGGCTCCAGAAGAGAACAAGTCCAACACCAAATCGTCTTGTGCTGGAATAACATGGAGCAAAGACGATGAGATTGTTATTTTGGGCGGCCTGATCTCGTTTCAGGAAGACGAGAGAGAGTATAAAAGCAAGGAATTTTATGAATACATAAAGAGTCGCCTCAGCCAGGGAGATTTGAACCAAGTAAGGGACAAAGTAAAATCCCTTAGGAGAAAATATATGGGGATGCAGAATCAGACGTTCTTAGAAACTTTCCAGAAGGGGCGTTACCAAGAGATGAAGGTGTTCAACTTGTCCAAAATTTATTGGTTTGACGCATACATGAGAAATGTTAGGCGAATCAGCTGTAATGCAAATTCTTCACATCCCAAGGGAAGAAGTGAAAGCTTTGATACATTGATAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0097159 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF573

Protein Analysis

224

Amino Acids

25.97

Weight (kDa)

9.33

Isoelectric Point (pI)

59.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GeBP-like_DBD	PF04504	107 - 192	3.9e-14	Glabrous-enhancer-binding protein-like family, DBD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0014648)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g28310
rosa_chinensis	RchiOBHm_Chr3g0496791
rosa_laevigata	RLG00000008047 RLG00000022502 RLG00000027947
rosa_multiflora	Rmu_sc0004684.1_g000029 Rmu_sc0013168.1_g000001 Rmu_sc0013725.1_g000002
rosa_roxburghii	Rroxscaffold_2G00136000 Rroxscaffold_6G00388700
rosa_rugosa	Rorug03G0287300
rosa_samantha	Rh3AG331500 Rh3BG343000 Rh3BG368000 Rh3CG364400 Rh3DG367600 Rh7DG330000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	183
AciI	CCGC	1 cut(s)	354
AcsI	RAATTY	3 cut(s)	401, 567, 622
AfaI	GTAC	1 cut(s)	27
AfiI	CCNNNNNNNGG	2 cut(s)	433, 454
AgsI	TTSAA	2 cut(s)	445, 556
AjnI	CCWGG	1 cut(s)	432
AluBI	AGCT	4 cut(s)	74, 263, 612, 654
AluI	AGCT	4 cut(s)	74, 263, 612, 654
Alw26I	GTCTC	1 cut(s)	164
AoxI	GGCC	1 cut(s)	355
ApeKI	GCWGC	1 cut(s)	260
ApoI	RAATTY	3 cut(s)	401, 567, 622
Asp700I	GAANNNNTTC	1 cut(s)	551
AspS9I	GGNCC	1 cut(s)	194
AsuHPI	GGTGA	3 cut(s)	6, 258, 262
AvaII	GGWCC	1 cut(s)	194
AxyI	CCTNAGG	1 cut(s)	473
BarI	GAAGNNNNNNTAC	2 cut(s)	518, 550
BbsI	GAAGAC	2 cut(s)	158, 381
BbvCI	CCTCAGC	1 cut(s)	428
BbvI	GCAGC	1 cut(s)	272
BciT130I	CCWGG	1 cut(s)	434
BcoDI	GTCTC	1 cut(s)	164
BisI	GCNGC	2 cut(s)	261, 355
BlsI	GCNGC	2 cut(s)	262, 356
Bme1390I	CCNGG	1 cut(s)	434
Bme18I	GGWCC	1 cut(s)	194
BmgT120I	GGNCC	1 cut(s)	194
BmiI	GGNNCC	1 cut(s)	273
BmrFI	CCNGG	1 cut(s)	434
BmsI	GCATC	2 cut(s)	43, 483
BpiI	GAAGAC	2 cut(s)	158, 381
BpmI	CTGGAG	1 cut(s)	258
Bpu10I	CCTNAGC	1 cut(s)	428
BsaJI	CCNNGG	3 cut(s)	81, 433, 636
Bsc4I	CCNNNNNNNGG	2 cut(s)	433, 454
Bse118I	RCCGGY	1 cut(s)	268
Bse21I	CCTNAGG	1 cut(s)	473
BseBI	CCWGG	1 cut(s)	434
BseDI	CCNNGG	3 cut(s)	81, 433, 636
BseGI	GGATG	2 cut(s)	498, 631
BseLI	CCNNNNNNNGG	2 cut(s)	433, 454
BseMII	CTCAG	1 cut(s)	442
BseRI	GAGGAG	1 cut(s)	182
BseXI	GCAGC	1 cut(s)	272
BshFI	GGCC	1 cut(s)	357
BsiSI	CCGG	1 cut(s)	269
BslFI	GGGAC	1 cut(s)	470
BslI	CCNNNNNNNGG	2 cut(s)	433, 454
BsmAI	GTCTC	1 cut(s)	164
BsmBI	CGTCTC	1 cut(s)	164
BsmFI	GGGAC	1 cut(s)	470
BsnI	GGCC	1 cut(s)	357
Bsp143I	GATC	1 cut(s)	360
BspACI	CCGC	1 cut(s)	354
BspANI	GGCC	1 cut(s)	357
BspCNI	CTCAG	1 cut(s)	441
BspLI	GGNNCC	1 cut(s)	273
BsrFI	RCCGGY	1 cut(s)	268
BssAI	RCCGGY	1 cut(s)	268
BssECI	CCNNGG	3 cut(s)	81, 433, 636
BssMI	GATC	1 cut(s)	360
BssT1I	CCWWGG	2 cut(s)	81, 636
Bst2UI	CCWGG	1 cut(s)	434
Bst6I	CTCTTC	2 cut(s)	122, 273
BstC8I	GCNNGC	1 cut(s)	162
BstDEI	CTNAG	3 cut(s)	428, 473, 511
BstENI	CCTNNNNNAGG	1 cut(s)	431
BstF5I	GGATG	2 cut(s)	498, 631
BstKTI	GATC	1 cut(s)	363
BstMAI	GTCTC	1 cut(s)	164
BstMBI	GATC	1 cut(s)	360
BstMWI	GCNNNNNNNGC	1 cut(s)	269
BstNI	CCWGG	1 cut(s)	434
BstSCI	CCNGG	1 cut(s)	432
BstV1I	GCAGC	1 cut(s)	272
BstV2I	GAAGAC	2 cut(s)	158, 381
Bsu36I	CCTNAGG	1 cut(s)	473
BsuRI	GGCC	1 cut(s)	357
BtsCI	GGATG	2 cut(s)	498, 631
Cac8I	GCNNGC	1 cut(s)	162
Cfr10I	RCCGGY	1 cut(s)	268
Cfr13I	GGNCC	1 cut(s)	194
CseI	GACGC	1 cut(s)	590
Csp6I	GTAC	1 cut(s)	26
CviAII	CATG	3 cut(s)	94, 321, 589
CviJI	RGCY	8 cut(s)	74, 160, 263, 272, 357, 432, 612, 654
CviKI_1	RGCY	8 cut(s)	74, 160, 263, 272, 357, 432, 612, 654
CviQI	GTAC	1 cut(s)	26
DdeI	CTNAG	3 cut(s)	428, 473, 511
DpnI	GATC	1 cut(s)	362
DpnII	GATC	1 cut(s)	360
Eam1104I	CTCTTC	2 cut(s)	122, 273
EarI	CTCTTC	2 cut(s)	122, 273
Eco130I	CCWWGG	2 cut(s)	81, 636
Eco47I	GGWCC	1 cut(s)	194
Eco81I	CCTNAGG	1 cut(s)	473
EcoNI	CCTNNNNNAGG	1 cut(s)	431
EcoRII	CCWGG	1 cut(s)	432
EcoT14I	CCWWGG	2 cut(s)	81, 636
ErhI	CCWWGG	2 cut(s)	81, 636
Esp3I	CGTCTC	1 cut(s)	164
FaeI	CATG	3 cut(s)	97, 324, 592
FaiI	YATR	9 cut(s)	95, 322, 390, 408, 416, 486, 488, 586, 590
FaqI	GGGAC	1 cut(s)	470
FatI	CATG	3 cut(s)	93, 320, 588
FblI	GTMKAC	1 cut(s)	183
Fnu4HI	GCNGC	2 cut(s)	261, 355
FokI	GGATG	2 cut(s)	505, 618
Fsp4HI	GCNGC	2 cut(s)	261, 355
GluI	GCNGC	2 cut(s)	261, 355
GsuI	CTGGAG	1 cut(s)	258
HaeIII	GGCC	1 cut(s)	357
HapII	CCGG	1 cut(s)	269
HgaI	GACGC	1 cut(s)	590
Hin1II	CATG	3 cut(s)	97, 324, 592
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HindIII	AAGCTT	1 cut(s)	652
HinfI	GANTC	4 cut(s)	32, 421, 499, 606
HpaII	CCGG	1 cut(s)	269
HphI	GGTGA	3 cut(s)	6, 258, 262
Hpy166II	GTNNAC	1 cut(s)	184
Hpy188I	TCNGA	1 cut(s)	504
Hpy188III	TCNNGA	3 cut(s)	275, 371, 523
Hpy8I	GTNNAC	1 cut(s)	184
HpyAV	CCTTC	2 cut(s)	520, 541
HpyCH4IV	ACGT	2 cut(s)	87, 506
HpyCH4V	TGCA	3 cut(s)	164, 496, 620
HpyF10VI	GCNNNNNNNGC	1 cut(s)	269
HpyF3I	CTNAG	3 cut(s)	428, 473, 511
HpySE526I	ACGT	2 cut(s)	87, 506
Hsp92II	CATG	3 cut(s)	97, 324, 592
Kzo9I	GATC	1 cut(s)	360
LmnI	GCTCC	2 cut(s)	277, 324
Lsp1109I	GCAGC	1 cut(s)	272
LweI	GCATC	2 cut(s)	43, 483
MaeII	ACGT	2 cut(s)	87, 506
MaeIII	GTNAC	2 cut(s)	59, 533
MalI	GATC	1 cut(s)	362
MboI	GATC	1 cut(s)	360
MluCI	AATT	4 cut(s)	76, 401, 567, 622
MlyI	GAGTC	1 cut(s)	430
MmeI	TCCRAC	2 cut(s)	123, 315
MnlI	CCTC	6 cut(s)	22, 123, 160, 217, 240, 437
MroXI	GAANNNNTTC	1 cut(s)	551
MspA1I	CMGCKG	1 cut(s)	612
MspI	CCGG	1 cut(s)	269
MspR9I	CCNGG	1 cut(s)	434
MvaI	CCWGG	1 cut(s)	434
MwoI	GCNNNNNNNGC	1 cut(s)	269
NdeII	GATC	1 cut(s)	360
NlaIII	CATG	3 cut(s)	97, 324, 592
NlaIV	GGNNCC	1 cut(s)	273
PdmI	GAANNNNTTC	1 cut(s)	551
PfeI	GAWTC	3 cut(s)	32, 499, 606
PflFI	GACNNNGTC	1 cut(s)	44
PkrI	GCNGC	2 cut(s)	262, 356
PleI	GAGTC	1 cut(s)	429
PpsI	GAGTC	1 cut(s)	429
Psp6I	CCWGG	1 cut(s)	432
PspGI	CCWGG	1 cut(s)	432
PspN4I	GGNNCC	1 cut(s)	273
PspPI	GGNCC	1 cut(s)	194
PsyI	GACNNNGTC	1 cut(s)	44
PvuII	CAGCTG	1 cut(s)	612
RsaI	GTAC	1 cut(s)	27
RsaNI	GTAC	1 cut(s)	26
SalI	GTCGAC	1 cut(s)	182
SatI	GCNGC	2 cut(s)	261, 355
Sau3AI	GATC	1 cut(s)	360
Sau96I	GGNCC	1 cut(s)	194
SchI	GAGTC	1 cut(s)	430
ScrFI	CCNGG	1 cut(s)	434
SetI	ASST	8 cut(s)	76, 90, 199, 265, 509, 552, 614, 656
SfaNI	GCATC	2 cut(s)	43, 483
SinI	GGWCC	1 cut(s)	194
Sse9I	AATT	4 cut(s)	76, 401, 567, 622
SsiI	CCGC	1 cut(s)	354
StyD4I	CCNGG	1 cut(s)	432
StyI	CCWWGG	2 cut(s)	81, 636
TaiI	ACGT	2 cut(s)	90, 509
TaqI	TCGA	1 cut(s)	183
TasI	AATT	4 cut(s)	76, 401, 567, 622
TauI	GCSGC	1 cut(s)	357
TfiI	GAWTC	3 cut(s)	32, 499, 606
TseI	GCWGC	1 cut(s)	260
TspDTI	ATGAA	2 cut(s)	423, 560
TspGWI	ACGGA	1 cut(s)	207
Tth111I	GACNNNGTC	1 cut(s)	44
VpaK11BI	GGWCC	1 cut(s)	194
XagI	CCTNNNNNAGG	1 cut(s)	431
XapI	RAATTY	3 cut(s)	401, 567, 622
XmiI	GTMKAC	1 cut(s)	183
XmnI	GAANNNNTTC	1 cut(s)	551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.