Rh3AG331500

Importin-5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0014648
Physical Location & Seq
Forward (+)
47781693 .. 47783017
1325 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG331500.1

Sequence Viewer

Length: 1002 bp
ATGTGTGATTCACCCATCCCTCTAATGGCGTTCTCACCCTTTATCGTACCAGATTCGCCAGACCAAGTCAAAGATGCTTATGACATGAACGAAGCTAATTCCAAGGACGTTATCATGTCCAACAAGACCACCGAGCAGACAAAAAAGAAGAGGAAGAAGAAGAAGAAGAAGGCAAGGCTTGCAGAGGAGACGAAGCAAGTCGACATCAACGGACCTGAAAAAGAAAATCAATCTGTTGATGAGGAACAAGACCCGAAAAACAAGAGGGTGAAAGTAGCAGCTTCACCGGCTCCAGAAGAGAACAAGTCCAACACCAAATCGTCTTGTGCTGGAATAACATGGAGCAAAGACGATGAGATTGTTATTTTGGGCGGCCTGATCTCGTTTCAGGGAGACGAGAGAGAGTATAAAAGCAAGGAATTTTATGAATACATAAAGAGTCGCCTCAGCCAGGGAGATTTGAACCAAGTAAGGGACAAAGTAAAATCCCTTAAGAGAAAATATATGGGGATGCAGAATCAGACGTTCTTAGAAACTTTCCAGAAGGGGCGTTACCAAGAGATGAAGGTGTTCAACTTGTCCAAAATTTATTGGGGTAAGTTTGATGCTGCTGATGATGACAAATTAAACAAGGAGAAGGAGGAAACAATACTAGTGCAGGTGGCTGACGATGAGGAGGAGGAGAATGAGGAGGAGGAGGAAAAGGAGGAGGAAACAATAAAAGTGAAGGTGGCGGACGATGAGAAGATGATTGATGATGATGACCAGAGCAAGCCAAAGATTAGTGGATTTCTTCGTCGTGGTTTGAGAGACCATTTTCAGATAGAGCACTTTGATCACAGGTGGGCTGAGGAGCAAGATCTCGAGGACTTGGAGAACAAGTGGAAGGCATACAAAATTGCTGAGGCCGAATCGAATTTGGCCGAAGCCCATTTTCGTAAAGCGCTCAACTGCTGCACACTCAAGGCCTACCGGATCTTTGGTTATCAAAATAATTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HEAT HEAT_2 HEAT_EZ IBN_N

Protein Analysis

333

Amino Acids

38.79

Weight (kDa)

5.18

Isoelectric Point (pI)

53.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GeBP-like_DBD PF04504 113 - 199 2.2e-14 Glabrous-enhancer-binding protein-like family, DBD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 649
Acc36I ACCTGC 1 cut(s) 649
AccI GTMKAC 1 cut(s) 201
AciI CCGC 2 cut(s) 372, 734
AclWI GGATC 1 cut(s) 983
AcoI YGGCCR 1 cut(s) 921
AcsI RAATTY 3 cut(s) 419, 585, 916
AfaI GTAC 1 cut(s) 48
AfeI AGCGCT 1 cut(s) 945
AfiI CCNNNNNNNGG 3 cut(s) 25, 451, 472
AflII CTTAAG 1 cut(s) 491
AgsI TTSAA 2 cut(s) 463, 574
AhlI ACTAGT 1 cut(s) 652
AjnI CCWGG 1 cut(s) 450
AluBI AGCT 2 cut(s) 95, 281
AluI AGCT 2 cut(s) 95, 281
Alw21I GWGCWC 1 cut(s) 831
Alw26I GTCTC 3 cut(s) 182, 387, 804
AlwI GGATC 1 cut(s) 983
Ama87I CYCGRG 1 cut(s) 863
Aor51HI AGCGCT 1 cut(s) 945
AoxI GGCC 4 cut(s) 373, 906, 921, 966
ApeKI GCWGC 3 cut(s) 278, 608, 954
ApoI RAATTY 3 cut(s) 419, 585, 916
Asp700I GAANNNNTTC 1 cut(s) 569
AspLEI GCGC 1 cut(s) 946
AspS9I GGNCC 1 cut(s) 212
AsuHPI GGTGA 4 cut(s) 3, 27, 276, 280
AvaI CYCGRG 1 cut(s) 863
AvaII GGWCC 1 cut(s) 212
BarI GAAGNNNNNNTAC 2 cut(s) 536, 568
Bbv12I GWGCWC 1 cut(s) 831
BbvCI CCTCAGC 3 cut(s) 446, 849, 903
BbvI GCAGC 3 cut(s) 290, 595, 941
BccI CCATC 1 cut(s) 23
BciT130I CCWGG 1 cut(s) 452
BclI TGATCA 1 cut(s) 835
BcoDI GTCTC 3 cut(s) 182, 387, 804
BcuI ACTAGT 1 cut(s) 652
BfaI CTAG 2 cut(s) 653, 1000
BfoI RGCGCY 1 cut(s) 947
BfrI CTTAAG 1 cut(s) 491
BfuAI ACCTGC 1 cut(s) 649
BglII AGATCT 1 cut(s) 859
BisI GCNGC 4 cut(s) 279, 373, 609, 955
BlsI GCNGC 4 cut(s) 280, 374, 610, 956
Bme1390I CCNGG 1 cut(s) 452
Bme18I GGWCC 1 cut(s) 212
BmeT110I CYCGRG 1 cut(s) 863
BmgT120I GGNCC 1 cut(s) 212
BmiI GGNNCC 1 cut(s) 291
BmrFI CCNGG 1 cut(s) 452
BmsI GCATC 3 cut(s) 64, 501, 595
BpmI CTGGAG 1 cut(s) 276
Bpu10I CCTNAGC 3 cut(s) 446, 849, 903
BpuEI CTTGAG 1 cut(s) 947
BsaI GGTCTC 1 cut(s) 804
BsaJI CCNNGG 2 cut(s) 102, 451
BsaWI WCCGGW 1 cut(s) 972
BsaXI ACNNNNNCTCC 2 cut(s) 866, 896
Bsc4I CCNNNNNNNGG 3 cut(s) 25, 451, 472
Bse118I RCCGGY 1 cut(s) 286
BseBI CCWGG 1 cut(s) 452
BseDI CCNNGG 2 cut(s) 102, 451
BseGI GGATG 2 cut(s) 15, 516
BseLI CCNNNNNNNGG 3 cut(s) 25, 451, 472
BseMII CTCAG 3 cut(s) 460, 840, 894
BseRI GAGGAG 9 cut(s) 200, 689, 692, 695, 704, 707, 710, 722, 866
BseXI GCAGC 3 cut(s) 290, 595, 941
BsgI GTGCAG 2 cut(s) 677, 940
BshFI GGCC 4 cut(s) 375, 908, 923, 968
BsiHKAI GWGCWC 1 cut(s) 831
BsiHKCI CYCGRG 1 cut(s) 863
BsiSI CCGG 2 cut(s) 287, 973
BslFI GGGAC 1 cut(s) 488
BslI CCNNNNNNNGG 3 cut(s) 25, 451, 472
BsmAI GTCTC 3 cut(s) 182, 387, 804
BsmBI CGTCTC 2 cut(s) 182, 387
BsmFI GGGAC 1 cut(s) 488
BsnI GGCC 4 cut(s) 375, 908, 923, 968
Bso31I GGTCTC 1 cut(s) 804
BsoBI CYCGRG 1 cut(s) 863
Bsp1286I GDGCHC 1 cut(s) 831
Bsp143I GATC 4 cut(s) 378, 835, 859, 975
BspACI CCGC 2 cut(s) 372, 734
BspANI GGCC 4 cut(s) 375, 908, 923, 968
BspCNI CTCAG 3 cut(s) 459, 841, 895
BspLI GGNNCC 1 cut(s) 291
BspMI ACCTGC 1 cut(s) 649
BspPI GGATC 1 cut(s) 983
BspTI CTTAAG 1 cut(s) 491
BspTNI GGTCTC 1 cut(s) 804
BsrFI RCCGGY 1 cut(s) 286
BssAI RCCGGY 1 cut(s) 286
BssECI CCNNGG 2 cut(s) 102, 451
BssMI GATC 4 cut(s) 378, 835, 859, 975
BssT1I CCWWGG 1 cut(s) 102
Bst2UI CCWGG 1 cut(s) 452
Bst6I CTCTTC 2 cut(s) 143, 291
BstAFI CTTAAG 1 cut(s) 491
BstAPI GCANNNNNTGC 1 cut(s) 179
BstC8I GCNNGC 2 cut(s) 180, 773
BstDEI CTNAG 4 cut(s) 446, 529, 849, 903
BstENI CCTNNNNNAGG 1 cut(s) 449
BstF5I GGATG 2 cut(s) 15, 516
BstH2I RGCGCY 1 cut(s) 947
BstHHI GCGC 1 cut(s) 946
BstKTI GATC 4 cut(s) 381, 838, 862, 978
BstMAI GTCTC 3 cut(s) 182, 387, 804
BstMBI GATC 4 cut(s) 378, 835, 859, 975
BstMWI GCNNNNNNNGC 2 cut(s) 179, 287
BstNI CCWGG 1 cut(s) 452
BstSCI CCNGG 1 cut(s) 450
BstV1I GCAGC 3 cut(s) 290, 595, 941
BstX2I RGATCY 2 cut(s) 859, 975
BstYI RGATCY 2 cut(s) 859, 975
BsuRI GGCC 4 cut(s) 375, 908, 923, 968
BtsCI GGATG 2 cut(s) 15, 516
BveI ACCTGC 1 cut(s) 649
Cac8I GCNNGC 2 cut(s) 180, 773
CfoI GCGC 1 cut(s) 946
Cfr10I RCCGGY 1 cut(s) 286
Cfr13I GGNCC 1 cut(s) 212
Csp6I GTAC 1 cut(s) 47
CviAII CATG 3 cut(s) 85, 115, 339
CviQI GTAC 1 cut(s) 47
DdeI CTNAG 4 cut(s) 446, 529, 849, 903
DpnI GATC 4 cut(s) 380, 837, 861, 977
DpnII GATC 4 cut(s) 378, 835, 859, 975
EaeI YGGCCR 1 cut(s) 921
Eam1104I CTCTTC 2 cut(s) 143, 291
EarI CTCTTC 2 cut(s) 143, 291
EciI GGCGGA 1 cut(s) 749
Eco130I CCWWGG 1 cut(s) 102
Eco147I AGGCCT 1 cut(s) 968
Eco31I GGTCTC 1 cut(s) 804
Eco47I GGWCC 1 cut(s) 212
Eco47III AGCGCT 1 cut(s) 945
Eco88I CYCGRG 1 cut(s) 863
EcoNI CCTNNNNNAGG 1 cut(s) 449
EcoRII CCWGG 1 cut(s) 450
EcoT14I CCWWGG 1 cut(s) 102
ErhI CCWWGG 1 cut(s) 102
Esp3I CGTCTC 2 cut(s) 182, 387
FaeI CATG 3 cut(s) 88, 118, 342
FaqI GGGAC 1 cut(s) 488
FatI CATG 3 cut(s) 84, 114, 338
FbaI TGATCA 1 cut(s) 835
FblI GTMKAC 1 cut(s) 201
Fnu4HI GCNGC 4 cut(s) 279, 373, 609, 955
FokI GGATG 2 cut(s) 2, 523
Fsp4HI GCNGC 4 cut(s) 279, 373, 609, 955
FspBI CTAG 2 cut(s) 653, 1000
GlaI GCGC 1 cut(s) 945
GluI GCNGC 4 cut(s) 279, 373, 609, 955
GsuI CTGGAG 1 cut(s) 276
HaeII RGCGCY 1 cut(s) 947
HaeIII GGCC 4 cut(s) 375, 908, 923, 968
HapII CCGG 2 cut(s) 287, 973
HhaI GCGC 1 cut(s) 946
Hin1II CATG 3 cut(s) 88, 118, 342
Hin6I GCGC 1 cut(s) 944
HinP1I GCGC 1 cut(s) 944
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HinfI GANTC 5 cut(s) 8, 53, 439, 517, 911
HpaII CCGG 2 cut(s) 287, 973
HphI GGTGA 4 cut(s) 3, 27, 276, 280
Hpy166II GTNNAC 1 cut(s) 202
Hpy188I TCNGA 2 cut(s) 522, 822
Hpy188III TCNNGA 3 cut(s) 293, 541, 863
Hpy8I GTNNAC 1 cut(s) 202
Hpy99I CGWCG 1 cut(s) 801
HpyAV CCTTC 6 cut(s) 163, 538, 559, 631, 721, 880
HpyCH4IV ACGT 2 cut(s) 108, 524
HpyCH4V TGCA 4 cut(s) 182, 514, 658, 957
HpyF10VI GCNNNNNNNGC 2 cut(s) 179, 287
HpyF3I CTNAG 4 cut(s) 446, 529, 849, 903
HpySE526I ACGT 2 cut(s) 108, 524
Hsp92II CATG 3 cut(s) 88, 118, 342
HspAI GCGC 1 cut(s) 944
Ksp22I TGATCA 1 cut(s) 835
Kzo9I GATC 4 cut(s) 378, 835, 859, 975
LmnI GCTCC 3 cut(s) 295, 342, 853
Lsp1109I GCAGC 3 cut(s) 290, 595, 941
LweI GCATC 3 cut(s) 64, 501, 595
MaeI CTAG 2 cut(s) 653, 1000
MaeII ACGT 2 cut(s) 108, 524
MaeIII GTNAC 1 cut(s) 551
MalI GATC 4 cut(s) 380, 837, 861, 977
MboI GATC 4 cut(s) 378, 835, 859, 975
MboII GAAGA 9 cut(s) 160, 166, 169, 172, 175, 178, 308, 757, 785
MflI RGATCY 2 cut(s) 859, 975
MhlI GDGCHC 1 cut(s) 831
MluCI AATT 7 cut(s) 97, 419, 585, 623, 897, 916, 994
MlyI GAGTC 1 cut(s) 448
MmeI TCCRAC 2 cut(s) 144, 333
MroXI GAANNNNTTC 1 cut(s) 569
MseI TTAA 2 cut(s) 492, 626
MspCI CTTAAG 1 cut(s) 491
MspI CCGG 2 cut(s) 287, 973
MspR9I CCNGG 1 cut(s) 452
MvaI CCWGG 1 cut(s) 452
MwoI GCNNNNNNNGC 2 cut(s) 179, 287
NdeII GATC 4 cut(s) 378, 835, 859, 975
NlaIII CATG 3 cut(s) 88, 118, 342
NlaIV GGNNCC 1 cut(s) 291
PaeR7I CTCGAG 1 cut(s) 863
PaqCI CACCTGC 1 cut(s) 649
PceI AGGCCT 1 cut(s) 968
PdmI GAANNNNTTC 1 cut(s) 569
PfeI GAWTC 4 cut(s) 8, 53, 517, 911
PflFI GACNNNGTC 1 cut(s) 65
PkrI GCNGC 4 cut(s) 280, 374, 610, 956
PleI GAGTC 1 cut(s) 447
PpsI GAGTC 1 cut(s) 447
Psp6I CCWGG 1 cut(s) 450
PspGI CCWGG 1 cut(s) 450
PspN4I GGNNCC 1 cut(s) 291
PspPI GGNCC 1 cut(s) 212
PsuI RGATCY 2 cut(s) 859, 975
PsyI GACNNNGTC 1 cut(s) 65
RsaI GTAC 1 cut(s) 48
RsaNI GTAC 1 cut(s) 47
SalI GTCGAC 1 cut(s) 200
SaqAI TTAA 2 cut(s) 492, 626
SatI GCNGC 4 cut(s) 279, 373, 609, 955
Sau3AI GATC 4 cut(s) 378, 835, 859, 975
Sau96I GGNCC 1 cut(s) 212
SchI GAGTC 1 cut(s) 448
ScrFI CCNGG 1 cut(s) 452
SduI GDGCHC 1 cut(s) 831
SetI ASST 9 cut(s) 97, 111, 217, 283, 527, 570, 663, 732, 845
SfaNI GCATC 3 cut(s) 64, 501, 595
Sfr274I CTCGAG 1 cut(s) 863
SinI GGWCC 1 cut(s) 212
SlaI CTCGAG 1 cut(s) 863
SmlI CTYRAG 3 cut(s) 491, 863, 962
SmoI CTYRAG 3 cut(s) 491, 863, 962
SpeI ACTAGT 1 cut(s) 652
Sse9I AATT 7 cut(s) 97, 419, 585, 623, 897, 916, 994
SseBI AGGCCT 1 cut(s) 968
SsiI CCGC 2 cut(s) 372, 734
SspMI CTAG 2 cut(s) 653, 1000
StuI AGGCCT 1 cut(s) 968
StyD4I CCNGG 1 cut(s) 450
StyI CCWWGG 1 cut(s) 102
TaiI ACGT 2 cut(s) 111, 527
TaqI TCGA 3 cut(s) 201, 864, 914
TasI AATT 7 cut(s) 97, 419, 585, 623, 897, 916, 994
TauI GCSGC 1 cut(s) 375
TfiI GAWTC 4 cut(s) 8, 53, 517, 911
Tru1I TTAA 2 cut(s) 492, 626
Tru9I TTAA 2 cut(s) 492, 626
TseI GCWGC 3 cut(s) 278, 608, 954
TspDTI ATGAA 3 cut(s) 101, 441, 578
TspGWI ACGGA 1 cut(s) 225
Tth111I GACNNNGTC 1 cut(s) 65
Vha464I CTTAAG 1 cut(s) 491
VpaK11BI GGWCC 1 cut(s) 212
XagI CCTNNNNNAGG 1 cut(s) 449
XapI RAATTY 3 cut(s) 419, 585, 916
XcmI CCANNNNNNNNNTGG 1 cut(s) 22
XhoI CTCGAG 1 cut(s) 863
XmiI GTMKAC 1 cut(s) 201
XmnI GAANNNNTTC 1 cut(s) 569
XspI CTAG 2 cut(s) 653, 1000
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.