Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0014648

Physical Location & Seq

Genomic Coordinates Reverse (-)

73582723 .. 73585280

Gene Structure 2558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00136000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGAACCAAAGCCGTCTCCAACCTCTCGAGCATAGGATACGCCTAACGACACTACGACCGTCCGCCCACACTCACCATGCACCGATGAGGCTTGTAGCTAGCGCTAGCGCCGAAGCGCAGCCGAACAGTGTGCACTCGACAACAGCGTCTCTAGTTTCTCTTTCTAGGCTCCGGATCTTCGTCGTCTATGGCTTCGACGCCATCAACGTCACAGAGCATGCATCGGCGGCTCTCGGCGCGGCGGGATTGGCGGAGGTGGTGGCCGAGTCCTACGAGCACATCTTCTTCACGAACTCGGTGGCCACCGCAAGGTGTACCCTCGACCGGAGTCATCGACTTTGCGGACTCCGGCGTCTTTCACATGGTCAAGACCCCTTGGAGGCGGCTCGTAAATTGGGCTTGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003861 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006551 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009081 GO:0009082 GO:0009098 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016053 GO:0016143 GO:0016144 GO:0016829 GO:0016835 GO:0016836 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046394 GO:0048229 GO:0048856 GO:0050896 GO:0071704 GO:0071840 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00290 ko00660 ko00966 ko01100 ko01110 ko01210 ko01230 map00290 map00660 map00966 map01100 map01110 map01210 map01230

Pfam Domains

Protein Families

Aconitase_C

Protein Analysis

135

Amino Acids

14.74

Weight (kDa)

10.23

Isoelectric Point (pI)

39.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014648)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g28310
rosa_chinensis	RchiOBHm_Chr3g0496791
rosa_laevigata	RLG00000008047 RLG00000022502 RLG00000027947
rosa_multiflora	Rmu_sc0004684.1_g000029 Rmu_sc0013168.1_g000001 Rmu_sc0013725.1_g000002
rosa_roxburghii	Rroxscaffold_2G00136000 Rroxscaffold_6G00388700
rosa_rugosa	Rorug03G0287300
rosa_samantha	Rh3AG331500 Rh3BG343000 Rh3BG368000 Rh3CG364400 Rh3DG367600 Rh7DG330000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	145, 351
AccII	CGCG	1 cut(s)	239
AccIII	TCCGGA	1 cut(s)	171
AciI	CCGC	8 cut(s)	63, 227, 239, 242, 251, 306, 342, 383
AclWI	GGATC	1 cut(s)	182
AcoI	YGGCCR	2 cut(s)	261, 300
AcyI	GRCGYC	2 cut(s)	198, 352
AfaI	GTAC	1 cut(s)	316
AfeI	AGCGCT	1 cut(s)	103
AfiI	CCNNNNNNNGG	3 cut(s)	309, 324, 379
AluBI	AGCT	1 cut(s)	98
AluI	AGCT	1 cut(s)	98
Alw21I	GWGCWC	2 cut(s)	135, 279
Alw26I	GTCTC	2 cut(s)	20, 153
Alw44I	GTGCAC	1 cut(s)	131
AlwI	GGATC	1 cut(s)	182
Ama87I	CYCGRG	1 cut(s)	26
Aor13HI	TCCGGA	1 cut(s)	171
Aor51HI	AGCGCT	1 cut(s)	103
AoxI	GGCC	2 cut(s)	261, 300
ApaLI	GTGCAC	1 cut(s)	131
ApeKI	GCWGC	1 cut(s)	118
AspLEI	GCGC	4 cut(s)	104, 110, 118, 239
AsuHPI	GGTGA	1 cut(s)	65
AsuNHI	GCTAGC	2 cut(s)	98, 104
AvaI	CYCGRG	1 cut(s)	26
BaeGI	GKGCMC	1 cut(s)	135
BalI	TGGCCA	1 cut(s)	302
Bbv12I	GWGCWC	2 cut(s)	135, 279
BbvI	GCAGC	1 cut(s)	130
BccI	CCATC	1 cut(s)	209
BcgI	CGANNNNNNTGC	2 cut(s)	112, 146
BciVI	GTATCC	1 cut(s)	30
BcoDI	GTCTC	2 cut(s)	20, 153
BfaI	CTAG	4 cut(s)	99, 105, 152, 165
BfoI	RGCGCY	2 cut(s)	105, 111
BfuI	GTATCC	1 cut(s)	30
BisI	GCNGC	4 cut(s)	119, 228, 240, 384
BlsI	GCNGC	4 cut(s)	120, 229, 241, 385
BmeT110I	CYCGRG	1 cut(s)	26
BmiI	GGNNCC	1 cut(s)	170
BmsI	GCATC	1 cut(s)	230
BmtI	GCTAGC	2 cut(s)	102, 108
BoxI	GACNNNNGTC	1 cut(s)	327
BsaHI	GRCGYC	2 cut(s)	198, 352
BsaJI	CCNNGG	1 cut(s)	375
BsaWI	WCCGGW	2 cut(s)	171, 324
Bsc4I	CCNNNNNNNGG	3 cut(s)	309, 324, 379
BseAI	TCCGGA	1 cut(s)	171
BseDI	CCNNGG	1 cut(s)	375
BseLI	CCNNNNNNNGG	3 cut(s)	309, 324, 379
BseSI	GKGCMC	1 cut(s)	135
BseXI	GCAGC	1 cut(s)	130
Bsh1236I	CGCG	1 cut(s)	239
Bsh1285I	CGRYCG	2 cut(s)	59, 325
BshFI	GGCC	2 cut(s)	263, 302
BsiEI	CGRYCG	2 cut(s)	59, 325
BsiHKAI	GWGCWC	2 cut(s)	135, 279
BsiHKCI	CYCGRG	1 cut(s)	26
BsiSI	CCGG	3 cut(s)	172, 325, 349
BslI	CCNNNNNNNGG	3 cut(s)	309, 324, 379
BsmAI	GTCTC	2 cut(s)	20, 153
BsmBI	CGTCTC	2 cut(s)	20, 153
BsnI	GGCC	2 cut(s)	263, 302
BsoBI	CYCGRG	1 cut(s)	26
Bsp1286I	GDGCHC	2 cut(s)	135, 279
Bsp13I	TCCGGA	1 cut(s)	171
Bsp143I	GATC	1 cut(s)	174
BspACI	CCGC	8 cut(s)	63, 227, 239, 242, 251, 306, 342, 383
BspANI	GGCC	2 cut(s)	263, 302
BspEI	TCCGGA	1 cut(s)	171
BspFNI	CGCG	1 cut(s)	239
BspLI	GGNNCC	1 cut(s)	170
BspOI	GCTAGC	2 cut(s)	102, 108
BspPI	GGATC	1 cut(s)	182
BssECI	CCNNGG	1 cut(s)	375
BssMI	GATC	1 cut(s)	174
BssNI	GRCGYC	2 cut(s)	198, 352
BssT1I	CCWWGG	1 cut(s)	375
Bst4CI	ACNGT	2 cut(s)	60, 128
BstACI	GRCGYC	2 cut(s)	198, 352
BstC8I	GCNNGC	3 cut(s)	100, 106, 219
BstFNI	CGCG	1 cut(s)	239
BstH2I	RGCGCY	2 cut(s)	105, 111
BstHHI	GCGC	4 cut(s)	104, 110, 118, 239
BstKTI	GATC	1 cut(s)	177
BstMAI	GTCTC	2 cut(s)	20, 153
BstMBI	GATC	1 cut(s)	174
BstMCI	CGRYCG	2 cut(s)	59, 325
BstMWI	GCNNNNNNNGC	3 cut(s)	227, 236, 248
BstNSI	RCATGY	1 cut(s)	221
BstPAI	GACNNNNGTC	1 cut(s)	327
BstSLI	GKGCMC	1 cut(s)	135
BstUI	CGCG	1 cut(s)	239
BstV1I	GCAGC	1 cut(s)	130
BstX2I	RGATCY	1 cut(s)	174
BstYI	RGATCY	1 cut(s)	174
BsuI	GTATCC	1 cut(s)	30
BsuRI	GGCC	2 cut(s)	263, 302
BtsIMutI	CAGTG	1 cut(s)	133
Cac8I	GCNNGC	3 cut(s)	100, 106, 219
CfoI	GCGC	4 cut(s)	104, 110, 118, 239
CseI	GACGC	3 cut(s)	135, 206, 341
Csp6I	GTAC	1 cut(s)	315
CviAII	CATG	3 cut(s)	77, 218, 362
CviQI	GTAC	1 cut(s)	315
DpnI	GATC	1 cut(s)	176
DpnII	GATC	1 cut(s)	174
DrdI	GACNNNNNNGTC	2 cut(s)	145, 351
DseDI	GACNNNNNNGTC	2 cut(s)	145, 351
EaeI	YGGCCR	2 cut(s)	261, 300
EciI	GGCGGA	2 cut(s)	52, 266
Eco130I	CCWWGG	1 cut(s)	375
Eco47III	AGCGCT	1 cut(s)	103
Eco88I	CYCGRG	1 cut(s)	26
EcoT14I	CCWWGG	1 cut(s)	375
EcoT22I	ATGCAT	1 cut(s)	223
ErhI	CCWWGG	1 cut(s)	375
Esp3I	CGTCTC	2 cut(s)	20, 153
FaeI	CATG	3 cut(s)	80, 221, 365
FaiI	YATR	5 cut(s)	33, 78, 189, 219, 363
FatI	CATG	3 cut(s)	76, 217, 361
FauI	CCCGC	1 cut(s)	235
Fnu4HI	GCNGC	4 cut(s)	119, 228, 240, 384
Fsp4HI	GCNGC	4 cut(s)	119, 228, 240, 384
FspBI	CTAG	4 cut(s)	99, 105, 152, 165
GlaI	GCGC	4 cut(s)	103, 109, 117, 238
GluI	GCNGC	4 cut(s)	119, 228, 240, 384
HaeII	RGCGCY	2 cut(s)	105, 111
HaeIII	GGCC	2 cut(s)	263, 302
HapII	CCGG	3 cut(s)	172, 325, 349
HgaI	GACGC	3 cut(s)	135, 206, 341
HhaI	GCGC	4 cut(s)	104, 110, 118, 239
Hin1I	GRCGYC	2 cut(s)	198, 352
Hin1II	CATG	3 cut(s)	80, 221, 365
Hin6I	GCGC	4 cut(s)	102, 108, 116, 237
HinP1I	GCGC	4 cut(s)	102, 108, 116, 237
HinfI	GANTC	3 cut(s)	266, 328, 345
HpaII	CCGG	3 cut(s)	172, 325, 349
HphI	GGTGA	1 cut(s)	65
Hpy166II	GTNNAC	2 cut(s)	133, 315
Hpy188III	TCNNGA	4 cut(s)	26, 172, 289, 368
Hpy8I	GTNNAC	2 cut(s)	133, 315
Hpy99I	CGWCG	2 cut(s)	185, 200
HpyCH4III	ACNGT	2 cut(s)	60, 128
HpyCH4IV	ACGT	1 cut(s)	207
HpyCH4V	TGCA	3 cut(s)	80, 133, 221
HpyF10VI	GCNNNNNNNGC	3 cut(s)	227, 236, 248
HpySE526I	ACGT	1 cut(s)	207
Hsp92I	GRCGYC	2 cut(s)	198, 352
Hsp92II	CATG	3 cut(s)	80, 221, 365
HspAI	GCGC	4 cut(s)	102, 108, 116, 237
Kpn2I	TCCGGA	1 cut(s)	171
Kzo9I	GATC	1 cut(s)	174
LmnI	GCTCC	1 cut(s)	174
LpnPI	CCDG	3 cut(s)	185, 338, 362
Lsp1109I	GCAGC	1 cut(s)	130
LweI	GCATC	1 cut(s)	230
MaeI	CTAG	4 cut(s)	99, 105, 152, 165
MaeII	ACGT	1 cut(s)	207
MaeIII	GTNAC	1 cut(s)	208
MalI	GATC	1 cut(s)	176
MboI	GATC	1 cut(s)	174
MboII	GAAGA	3 cut(s)	169, 274, 277
MflI	RGATCY	1 cut(s)	174
MhlI	GDGCHC	2 cut(s)	135, 279
MlsI	TGGCCA	1 cut(s)	302
MluCI	AATT	1 cut(s)	392
MluNI	TGGCCA	1 cut(s)	302
MlyI	GAGTC	3 cut(s)	275, 337, 339
MmeI	TCCRAC	1 cut(s)	43
MnlI	CCTC	5 cut(s)	33, 81, 247, 329, 373
Mox20I	TGGCCA	1 cut(s)	302
Mph1103I	ATGCAT	1 cut(s)	223
MroI	TCCGGA	1 cut(s)	171
MscI	TGGCCA	1 cut(s)	302
Msp20I	TGGCCA	1 cut(s)	302
MspI	CCGG	3 cut(s)	172, 325, 349
MvnI	CGCG	1 cut(s)	239
MwoI	GCNNNNNNNGC	3 cut(s)	227, 236, 248
NdeII	GATC	1 cut(s)	174
NheI	GCTAGC	2 cut(s)	98, 104
NlaIII	CATG	3 cut(s)	80, 221, 365
NlaIV	GGNNCC	1 cut(s)	170
NmeAIII	GCCGAG	2 cut(s)	213, 289
NmuCI	GTSAC	1 cut(s)	208
NsiI	ATGCAT	1 cut(s)	223
NspI	RCATGY	1 cut(s)	221
PaeI	GCATGC	1 cut(s)	221
PaeR7I	CTCGAG	1 cut(s)	26
PcsI	WCGNNNNNNNCGW	2 cut(s)	143, 204
PkrI	GCNGC	4 cut(s)	120, 229, 241, 385
PleI	GAGTC	3 cut(s)	274, 336, 339
PpsI	GAGTC	3 cut(s)	274, 336, 339
PshAI	GACNNNNGTC	1 cut(s)	327
PspN4I	GGNNCC	1 cut(s)	170
PsuI	RGATCY	1 cut(s)	174
RsaI	GTAC	1 cut(s)	316
RsaNI	GTAC	1 cut(s)	315
SatI	GCNGC	4 cut(s)	119, 228, 240, 384
Sau3AI	GATC	1 cut(s)	174
SchI	GAGTC	3 cut(s)	275, 337, 339
SduI	GDGCHC	2 cut(s)	135, 279
SetI	ASST	5 cut(s)	25, 100, 210, 258, 314
SfaNI	GCATC	1 cut(s)	230
Sfr274I	CTCGAG	1 cut(s)	26
SlaI	CTCGAG	1 cut(s)	26
SmlI	CTYRAG	2 cut(s)	26, 400
SmoI	CTYRAG	2 cut(s)	26, 400
SphI	GCATGC	1 cut(s)	221
Sse9I	AATT	1 cut(s)	392
SsiI	CCGC	8 cut(s)	63, 227, 239, 242, 251, 306, 342, 383
SspMI	CTAG	4 cut(s)	99, 105, 152, 165
StyI	CCWWGG	1 cut(s)	375
TaaI	ACNGT	2 cut(s)	60, 128
TaiI	ACGT	1 cut(s)	210
TaqI	TCGA	5 cut(s)	27, 137, 195, 321, 334
TasI	AATT	1 cut(s)	392
TauI	GCSGC	3 cut(s)	230, 242, 386
TscAI	CASTG	1 cut(s)	133
TseFI	GTSAC	1 cut(s)	208
TseI	GCWGC	1 cut(s)	118
Tsp45I	GTSAC	1 cut(s)	208
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	133
VneI	GTGCAC	1 cut(s)	131
XceI	RCATGY	1 cut(s)	221
XhoI	CTCGAG	1 cut(s)	26
XspI	CTAG	4 cut(s)	99, 105, 152, 165
Zsp2I	ATGCAT	1 cut(s)	223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.