Rroxscaffold_6G00388700

Importin-5-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0014648
Physical Location & Seq
Reverse (-)
1792972 .. 1794003
1032 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00388700.1

Sequence Viewer

Length: 933 bp
ATGGCGTTCTCACCCCTTATCGTACCCGATTCGCCAGACCAAGTCAAAGATGCTTGTGACGAGAACGAAGCTCAACGTCCTTGGAATATCATGTCCAACAAGACCACCGAGCAGACAAAAAAGAAGAGGAAGAAGAAGAAGAAGAAGAAGGCAAGGCTTGCAGAGGAGACGAAGCAAGTCGACATCAACGGACCTGAAAAAGAAAATCAATCTGTTGATGAGGAACAAGACCCGAAAAACAAGAGGGTGAAACTAGCAGCTTCACCGGCTCCAGAAGAGAACAAGTCCAATACCAAATCGTCTTGTGCTGGAATAACATGGAGCAAAGACGATGAGATTGTTATTTTGGGCGGCCTGATCTCGTTTCAGGGAGACGAGAGAGAGTATAAAAGCAAGGAATTTTATGAATACATAAAGAGTCGCCTCAGCCAGGGAGATTTGAACCAAGTAAGGGACAAAGTAAAATCCCTTAAGAGAAAATATATGGGGATGCAGAATAAGACGTTCTTACAAACTTTCCAGAAGGGGCGTTACCAAGAGATGAAGGGTAAGTTTGATGCTGCTGATGATGACAAATTAAACAAGGAGAAGGAGGAAACAATACTAGGGCAGGTGGCTGACGATGAGGGGGAAAAGGAGGAGGAAACAATACAAGTGAAGGTCGCGGACTATGAGAAGATGATTGATGATGATGATCAGAGCAAGCCAAGGATTAGTGAAGTTCTTCGTCGTGGTTTGGGAGACCATTTTCTGAGAGAGCACTTTGATCACAGGTGGGCTGAGGAGCAGGATCTCGAGGACTTGGAGAACAAGTGGAAGGCATACAAAATTGCTGAGGCCAAATCGAATTTGGCCGAAGCCCATTTTCGTAAAGCGTTCAACTGCTGCACACTCAAGGCCTACCGGATATTTGGTTATCAAAATAATTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HEAT HEAT_2 HEAT_EZ IBN_N

Protein Analysis

310

Amino Acids

36.02

Weight (kDa)

6.52

Isoelectric Point (pI)

50.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GeBP-like_DBD PF04504 106 - 172 4.3e-12 Glabrous-enhancer-binding protein-like family, DBD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 601
Acc36I ACCTGC 1 cut(s) 601
AccI GTMKAC 1 cut(s) 180
AccII CGCG 1 cut(s) 665
AciI CCGC 2 cut(s) 351, 665
AclWI GGATC 1 cut(s) 798
AcoI YGGCCR 1 cut(s) 852
AcsI RAATTY 2 cut(s) 398, 847
AfaI GTAC 1 cut(s) 24
AfiI CCNNNNNNNGG 2 cut(s) 430, 451
AflII CTTAAG 1 cut(s) 470
AgsI TTSAA 2 cut(s) 442, 880
AjnI CCWGG 1 cut(s) 429
AluBI AGCT 2 cut(s) 71, 260
AluI AGCT 2 cut(s) 71, 260
Alw21I GWGCWC 1 cut(s) 762
Alw26I GTCTC 3 cut(s) 161, 366, 735
AlwI GGATC 1 cut(s) 798
Ama87I CYCGRG 1 cut(s) 794
AoxI GGCC 4 cut(s) 352, 837, 852, 897
ApeKI GCWGC 3 cut(s) 257, 560, 885
ApoI RAATTY 2 cut(s) 398, 847
Asp700I GAANNNNTTC 1 cut(s) 723
AspS9I GGNCC 1 cut(s) 191
AsuHPI GGTGA 3 cut(s) 3, 255, 259
AvaI CYCGRG 1 cut(s) 794
AvaII GGWCC 1 cut(s) 191
BarI GAAGNNNNNNTAC 2 cut(s) 515, 547
Bbv12I GWGCWC 1 cut(s) 762
BbvCI CCTCAGC 3 cut(s) 425, 780, 834
BbvI GCAGC 3 cut(s) 269, 547, 872
BciT130I CCWGG 1 cut(s) 431
BclI TGATCA 2 cut(s) 694, 766
BcoDI GTCTC 3 cut(s) 161, 366, 735
BfaI CTAG 3 cut(s) 254, 605, 931
BfrI CTTAAG 1 cut(s) 470
BfuAI ACCTGC 1 cut(s) 601
BisI GCNGC 4 cut(s) 258, 352, 561, 886
BlsI GCNGC 4 cut(s) 259, 353, 562, 887
Bme1390I CCNGG 1 cut(s) 431
Bme18I GGWCC 1 cut(s) 191
BmeT110I CYCGRG 1 cut(s) 794
BmgT120I GGNCC 1 cut(s) 191
BmiI GGNNCC 1 cut(s) 270
BmrFI CCNGG 1 cut(s) 431
BmsI GCATC 3 cut(s) 40, 480, 547
BpmI CTGGAG 1 cut(s) 255
Bpu10I CCTNAGC 3 cut(s) 425, 780, 834
BpuEI CTTGAG 1 cut(s) 878
BsaBI GATNNNNATC 1 cut(s) 693
BsaI GGTCTC 1 cut(s) 735
BsaJI CCNNGG 3 cut(s) 80, 430, 707
BsaWI WCCGGW 1 cut(s) 903
BsaXI ACNNNNNCTCC 2 cut(s) 797, 827
Bsc4I CCNNNNNNNGG 2 cut(s) 430, 451
Bse118I RCCGGY 1 cut(s) 265
Bse8I GATNNNNATC 1 cut(s) 693
BseBI CCWGG 1 cut(s) 431
BseDI CCNNGG 3 cut(s) 80, 430, 707
BseGI GGATG 1 cut(s) 495
BseJI GATNNNNATC 1 cut(s) 693
BseLI CCNNNNNNNGG 2 cut(s) 430, 451
BseMII CTCAG 4 cut(s) 439, 743, 771, 825
BseRI GAGGAG 3 cut(s) 179, 653, 797
BseXI GCAGC 3 cut(s) 269, 547, 872
BsgI GTGCAG 1 cut(s) 871
Bsh1236I CGCG 1 cut(s) 665
BshFI GGCC 4 cut(s) 354, 839, 854, 899
BsiHKAI GWGCWC 1 cut(s) 762
BsiHKCI CYCGRG 1 cut(s) 794
BsiSI CCGG 2 cut(s) 266, 904
BslFI GGGAC 1 cut(s) 467
BslI CCNNNNNNNGG 2 cut(s) 430, 451
BsmAI GTCTC 3 cut(s) 161, 366, 735
BsmBI CGTCTC 2 cut(s) 161, 366
BsmFI GGGAC 1 cut(s) 467
BsnI GGCC 4 cut(s) 354, 839, 854, 899
Bso31I GGTCTC 1 cut(s) 735
BsoBI CYCGRG 1 cut(s) 794
Bsp1286I GDGCHC 1 cut(s) 762
Bsp143I GATC 4 cut(s) 357, 694, 766, 790
BspACI CCGC 2 cut(s) 351, 665
BspANI GGCC 4 cut(s) 354, 839, 854, 899
BspCNI CTCAG 4 cut(s) 438, 744, 772, 826
BspFNI CGCG 1 cut(s) 665
BspLI GGNNCC 1 cut(s) 270
BspMI ACCTGC 1 cut(s) 601
BspPI GGATC 1 cut(s) 798
BspTI CTTAAG 1 cut(s) 470
BspTNI GGTCTC 1 cut(s) 735
BsrFI RCCGGY 1 cut(s) 265
BssAI RCCGGY 1 cut(s) 265
BssECI CCNNGG 3 cut(s) 80, 430, 707
BssMI GATC 4 cut(s) 357, 694, 766, 790
BssT1I CCWWGG 2 cut(s) 80, 707
Bst2UI CCWGG 1 cut(s) 431
Bst6I CTCTTC 2 cut(s) 119, 270
BstAFI CTTAAG 1 cut(s) 470
BstAPI GCANNNNNTGC 1 cut(s) 158
BstC8I GCNNGC 2 cut(s) 159, 704
BstDEI CTNAG 4 cut(s) 425, 752, 780, 834
BstENI CCTNNNNNAGG 1 cut(s) 428
BstF5I GGATG 1 cut(s) 495
BstFNI CGCG 1 cut(s) 665
BstKTI GATC 4 cut(s) 360, 697, 769, 793
BstMAI GTCTC 3 cut(s) 161, 366, 735
BstMBI GATC 4 cut(s) 357, 694, 766, 790
BstMWI GCNNNNNNNGC 2 cut(s) 158, 266
BstNI CCWGG 1 cut(s) 431
BstSCI CCNGG 1 cut(s) 429
BstUI CGCG 1 cut(s) 665
BstV1I GCAGC 3 cut(s) 269, 547, 872
BstX2I RGATCY 1 cut(s) 790
BstYI RGATCY 1 cut(s) 790
BsuRI GGCC 4 cut(s) 354, 839, 854, 899
BtsCI GGATG 1 cut(s) 495
BveI ACCTGC 1 cut(s) 601
Cac8I GCNNGC 2 cut(s) 159, 704
Cfr10I RCCGGY 1 cut(s) 265
Cfr13I GGNCC 1 cut(s) 191
Csp6I GTAC 1 cut(s) 23
CviAII CATG 2 cut(s) 91, 318
CviQI GTAC 1 cut(s) 23
DdeI CTNAG 4 cut(s) 425, 752, 780, 834
DpnI GATC 4 cut(s) 359, 696, 768, 792
DpnII GATC 4 cut(s) 357, 694, 766, 790
EaeI YGGCCR 1 cut(s) 852
Eam1104I CTCTTC 2 cut(s) 119, 270
EarI CTCTTC 2 cut(s) 119, 270
Eco130I CCWWGG 2 cut(s) 80, 707
Eco147I AGGCCT 1 cut(s) 899
Eco31I GGTCTC 1 cut(s) 735
Eco47I GGWCC 1 cut(s) 191
Eco88I CYCGRG 1 cut(s) 794
EcoNI CCTNNNNNAGG 1 cut(s) 428
EcoRII CCWGG 1 cut(s) 429
EcoT14I CCWWGG 2 cut(s) 80, 707
ErhI CCWWGG 2 cut(s) 80, 707
Esp3I CGTCTC 2 cut(s) 161, 366
FaeI CATG 2 cut(s) 94, 321
FaiI YATR 9 cut(s) 92, 319, 387, 405, 413, 483, 485, 672, 823
FalI AAGNNNNNCTT 2 cut(s) 491, 523
FaqI GGGAC 1 cut(s) 467
FatI CATG 2 cut(s) 90, 317
FbaI TGATCA 2 cut(s) 694, 766
FblI GTMKAC 1 cut(s) 180
Fnu4HI GCNGC 4 cut(s) 258, 352, 561, 886
FokI GGATG 1 cut(s) 502
Fsp4HI GCNGC 4 cut(s) 258, 352, 561, 886
FspBI CTAG 3 cut(s) 254, 605, 931
GluI GCNGC 4 cut(s) 258, 352, 561, 886
GsuI CTGGAG 1 cut(s) 255
HaeIII GGCC 4 cut(s) 354, 839, 854, 899
HapII CCGG 2 cut(s) 266, 904
Hin1II CATG 2 cut(s) 94, 321
HincII GTYRAC 1 cut(s) 181
HindII GTYRAC 1 cut(s) 181
HinfI GANTC 2 cut(s) 29, 418
HpaII CCGG 2 cut(s) 266, 904
HphI GGTGA 3 cut(s) 3, 255, 259
Hpy166II GTNNAC 1 cut(s) 181
Hpy188I TCNGA 2 cut(s) 699, 753
Hpy188III TCNNGA 3 cut(s) 272, 520, 794
Hpy8I GTNNAC 1 cut(s) 181
Hpy99I CGWCG 1 cut(s) 732
HpyAV CCTTC 6 cut(s) 142, 517, 538, 583, 652, 811
HpyCH4IV ACGT 2 cut(s) 76, 503
HpyCH4V TGCA 3 cut(s) 161, 493, 888
HpyF10VI GCNNNNNNNGC 2 cut(s) 158, 266
HpyF3I CTNAG 4 cut(s) 425, 752, 780, 834
HpySE526I ACGT 2 cut(s) 76, 503
Hsp92II CATG 2 cut(s) 94, 321
Ksp22I TGATCA 2 cut(s) 694, 766
Kzo9I GATC 4 cut(s) 357, 694, 766, 790
LmnI GCTCC 3 cut(s) 274, 321, 784
Lsp1109I GCAGC 3 cut(s) 269, 547, 872
LweI GCATC 3 cut(s) 40, 480, 547
MaeI CTAG 3 cut(s) 254, 605, 931
MaeII ACGT 2 cut(s) 76, 503
MaeIII GTNAC 2 cut(s) 56, 530
MalI GATC 4 cut(s) 359, 696, 768, 792
MboI GATC 4 cut(s) 357, 694, 766, 790
MflI RGATCY 1 cut(s) 790
MhlI GDGCHC 1 cut(s) 762
MluCI AATT 5 cut(s) 398, 575, 828, 847, 925
MlyI GAGTC 1 cut(s) 427
MmeI TCCRAC 1 cut(s) 120
MroXI GAANNNNTTC 1 cut(s) 723
MseI TTAA 2 cut(s) 471, 578
MspCI CTTAAG 1 cut(s) 470
MspI CCGG 2 cut(s) 266, 904
MspR9I CCNGG 1 cut(s) 431
MvaI CCWGG 1 cut(s) 431
MvnI CGCG 1 cut(s) 665
MwoI GCNNNNNNNGC 2 cut(s) 158, 266
NdeII GATC 4 cut(s) 357, 694, 766, 790
NlaIII CATG 2 cut(s) 94, 321
NlaIV GGNNCC 1 cut(s) 270
NmuCI GTSAC 1 cut(s) 56
PaeR7I CTCGAG 1 cut(s) 794
PaqCI CACCTGC 1 cut(s) 601
PceI AGGCCT 1 cut(s) 899
PdmI GAANNNNTTC 1 cut(s) 723
PfeI GAWTC 1 cut(s) 29
PflFI GACNNNGTC 1 cut(s) 41
PkrI GCNGC 4 cut(s) 259, 353, 562, 887
PleI GAGTC 1 cut(s) 426
PpsI GAGTC 1 cut(s) 426
Psp6I CCWGG 1 cut(s) 429
PspGI CCWGG 1 cut(s) 429
PspN4I GGNNCC 1 cut(s) 270
PspPI GGNCC 1 cut(s) 191
PsuI RGATCY 1 cut(s) 790
PsyI GACNNNGTC 1 cut(s) 41
RsaI GTAC 1 cut(s) 24
RsaNI GTAC 1 cut(s) 23
SalI GTCGAC 1 cut(s) 179
SaqAI TTAA 2 cut(s) 471, 578
SatI GCNGC 4 cut(s) 258, 352, 561, 886
Sau3AI GATC 4 cut(s) 357, 694, 766, 790
Sau96I GGNCC 1 cut(s) 191
SchI GAGTC 1 cut(s) 427
ScrFI CCNGG 1 cut(s) 431
SduI GDGCHC 1 cut(s) 762
SetI ASST 8 cut(s) 73, 79, 196, 262, 506, 615, 663, 776
SfaNI GCATC 3 cut(s) 40, 480, 547
Sfr274I CTCGAG 1 cut(s) 794
SinI GGWCC 1 cut(s) 191
SlaI CTCGAG 1 cut(s) 794
SmlI CTYRAG 3 cut(s) 470, 794, 893
SmoI CTYRAG 3 cut(s) 470, 794, 893
Sse9I AATT 5 cut(s) 398, 575, 828, 847, 925
SseBI AGGCCT 1 cut(s) 899
SsiI CCGC 2 cut(s) 351, 665
SspMI CTAG 3 cut(s) 254, 605, 931
StuI AGGCCT 1 cut(s) 899
StyD4I CCNGG 1 cut(s) 429
StyI CCWWGG 2 cut(s) 80, 707
TaiI ACGT 2 cut(s) 79, 506
TaqI TCGA 3 cut(s) 180, 795, 845
TasI AATT 5 cut(s) 398, 575, 828, 847, 925
TauI GCSGC 1 cut(s) 354
TfiI GAWTC 1 cut(s) 29
Tru1I TTAA 2 cut(s) 471, 578
Tru9I TTAA 2 cut(s) 471, 578
TseFI GTSAC 1 cut(s) 56
TseI GCWGC 3 cut(s) 257, 560, 885
Tsp45I GTSAC 1 cut(s) 56
TspDTI ATGAA 2 cut(s) 420, 557
TspGWI ACGGA 1 cut(s) 204
Tth111I GACNNNGTC 1 cut(s) 41
Vha464I CTTAAG 1 cut(s) 470
VpaK11BI GGWCC 1 cut(s) 191
XagI CCTNNNNNAGG 1 cut(s) 428
XapI RAATTY 2 cut(s) 398, 847
XcmI CCANNNNNNNNNTGG 1 cut(s) 847
XhoI CTCGAG 1 cut(s) 794
XmiI GTMKAC 1 cut(s) 180
XmnI GAANNNNTTC 1 cut(s) 723
XspI CTAG 3 cut(s) 254, 605, 931
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.