Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0014648

Physical Location & Seq

Genomic Coordinates Reverse (-)

37022669 .. 37026354

Gene Structure 3686 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG343000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 183 bp

ATGGGAGTTCATAAACTCCCGATCTTCGTCGTCTACAGCTTCGATGCCATTAATGTCACAGAGAATGCGCCGGTGGCTCTCGGTGCGGCGGGAGTGGTGGCTGAGTCCTACGCGCGCATCTTCTTCACGAACTCGGTGGCCACTGGCAAGGTGTACCCTCTAGAATCGGAGACGAGGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003861 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006551 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009081 GO:0009082 GO:0009098 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016053 GO:0016143 GO:0016144 GO:0016829 GO:0016835 GO:0016836 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046394 GO:0048229 GO:0048856 GO:0050896 GO:0071704 GO:0071840 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00290 ko00660 ko00966 ko01100 ko01110 ko01210 ko01230 map00290 map00660 map00966 map01100 map01110 map01210 map01230

Pfam Domains

Protein Families

Aconitase_C

Protein Analysis

60

Amino Acids

6.43

Weight (kDa)

5.57

Isoelectric Point (pI)

30.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014648)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g28310
rosa_chinensis	RchiOBHm_Chr3g0496791
rosa_laevigata	RLG00000008047 RLG00000022502 RLG00000027947
rosa_multiflora	Rmu_sc0004684.1_g000029 Rmu_sc0013168.1_g000001 Rmu_sc0013725.1_g000002
rosa_roxburghii	Rroxscaffold_2G00136000 Rroxscaffold_6G00388700
rosa_rugosa	Rorug03G0287300
rosa_samantha	Rh3AG331500 Rh3BG343000 Rh3BG368000 Rh3CG364400 Rh3DG367600 Rh7DG330000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	33
AccII	CGCG	2 cut(s)	113, 115
AciI	CCGC	2 cut(s)	86, 89
AcoI	YGGCCR	1 cut(s)	138
AfaI	GTAC	1 cut(s)	155
AluBI	AGCT	1 cut(s)	39
AluI	AGCT	1 cut(s)	39
Alw26I	GTCTC	1 cut(s)	164
AoxI	GGCC	1 cut(s)	138
AseI	ATTAAT	1 cut(s)	51
AspLEI	GCGC	3 cut(s)	70, 115, 117
BalI	TGGCCA	1 cut(s)	140
BcoDI	GTCTC	1 cut(s)	164
BfaI	CTAG	1 cut(s)	161
BfmI	CTRYAG	1 cut(s)	34
BisI	GCNGC	1 cut(s)	87
BlsI	GCNGC	1 cut(s)	88
BmsI	GCATC	2 cut(s)	34, 126
Bse118I	RCCGGY	1 cut(s)	70
Bse1I	ACTGG	1 cut(s)	148
BseMII	CTCAG	1 cut(s)	93
BseNI	ACTGG	1 cut(s)	148
BsePI	GCGCGC	1 cut(s)	113
Bsh1236I	CGCG	2 cut(s)	113, 115
BshFI	GGCC	1 cut(s)	140
BsiSI	CCGG	1 cut(s)	71
BsmAI	GTCTC	1 cut(s)	164
BsmBI	CGTCTC	1 cut(s)	164
BsmI	GAATGC	1 cut(s)	70
BsnI	GGCC	1 cut(s)	140
Bsp143I	GATC	1 cut(s)	21
BspACI	CCGC	2 cut(s)	86, 89
BspANI	GGCC	1 cut(s)	140
BspCNI	CTCAG	1 cut(s)	94
BspFNI	CGCG	2 cut(s)	113, 115
BsrFI	RCCGGY	1 cut(s)	70
BsrI	ACTGG	1 cut(s)	148
BssAI	RCCGGY	1 cut(s)	70
BssHII	GCGCGC	1 cut(s)	113
BssMI	GATC	1 cut(s)	21
BstC8I	GCNNGC	1 cut(s)	115
BstDEI	CTNAG	1 cut(s)	102
BstFNI	CGCG	2 cut(s)	113, 115
BstHHI	GCGC	3 cut(s)	70, 115, 117
BstKTI	GATC	1 cut(s)	24
BstMAI	GTCTC	1 cut(s)	164
BstMBI	GATC	1 cut(s)	21
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 83
BstSFI	CTRYAG	1 cut(s)	34
BstUI	CGCG	2 cut(s)	113, 115
BsuRI	GGCC	1 cut(s)	140
BtsIMutI	CAGTG	1 cut(s)	141
Cac8I	GCNNGC	1 cut(s)	115
CfoI	GCGC	3 cut(s)	70, 115, 117
Cfr10I	RCCGGY	1 cut(s)	70
Csp6I	GTAC	1 cut(s)	154
CviJI	RGCY	4 cut(s)	39, 77, 101, 140
CviKI_1	RGCY	4 cut(s)	39, 77, 101, 140
CviQI	GTAC	1 cut(s)	154
DdeI	CTNAG	1 cut(s)	102
DpnI	GATC	1 cut(s)	23
DpnII	GATC	1 cut(s)	21
EaeI	YGGCCR	1 cut(s)	138
Esp3I	CGTCTC	1 cut(s)	164
FaiI	YATR	1 cut(s)	12
FauI	CCCGC	1 cut(s)	82
FblI	GTMKAC	1 cut(s)	33
Fnu4HI	GCNGC	1 cut(s)	87
Fsp4HI	GCNGC	1 cut(s)	87
FspBI	CTAG	1 cut(s)	161
GlaI	GCGC	3 cut(s)	69, 114, 116
GluI	GCNGC	1 cut(s)	87
HaeIII	GGCC	1 cut(s)	140
HapII	CCGG	1 cut(s)	71
HhaI	GCGC	3 cut(s)	70, 115, 117
Hin6I	GCGC	3 cut(s)	68, 113, 115
HinP1I	GCGC	3 cut(s)	68, 113, 115
HinfI	GANTC	2 cut(s)	104, 164
HpaII	CCGG	1 cut(s)	71
Hpy166II	GTNNAC	2 cut(s)	34, 154
Hpy188I	TCNGA	1 cut(s)	169
Hpy188III	TCNNGA	3 cut(s)	19, 127, 161
Hpy8I	GTNNAC	2 cut(s)	34, 154
Hpy99I	CGWCG	1 cut(s)	32
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 83
HpyF3I	CTNAG	1 cut(s)	102
HspAI	GCGC	3 cut(s)	68, 113, 115
Kzo9I	GATC	1 cut(s)	21
LpnPI	CCDG	2 cut(s)	84, 129
LweI	GCATC	2 cut(s)	34, 126
MaeI	CTAG	1 cut(s)	161
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	1 cut(s)	23
MboI	GATC	1 cut(s)	21
MboII	GAAGA	3 cut(s)	16, 112, 115
MlsI	TGGCCA	1 cut(s)	140
MluNI	TGGCCA	1 cut(s)	140
MlyI	GAGTC	1 cut(s)	113
MnlI	CCTC	2 cut(s)	168, 168
Mox20I	TGGCCA	1 cut(s)	140
MscI	TGGCCA	1 cut(s)	140
MseI	TTAA	1 cut(s)	51
Msp20I	TGGCCA	1 cut(s)	140
MspI	CCGG	1 cut(s)	71
Mva1269I	GAATGC	1 cut(s)	70
MvnI	CGCG	2 cut(s)	113, 115
MwoI	GCNNNNNNNGC	2 cut(s)	74, 83
NdeII	GATC	1 cut(s)	21
NmuCI	GTSAC	1 cut(s)	55
PauI	GCGCGC	1 cut(s)	113
PctI	GAATGC	1 cut(s)	70
PfeI	GAWTC	1 cut(s)	164
PkrI	GCNGC	1 cut(s)	88
PleI	GAGTC	1 cut(s)	112
PpsI	GAGTC	1 cut(s)	112
PshBI	ATTAAT	1 cut(s)	51
PteI	GCGCGC	1 cut(s)	113
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
SaqAI	TTAA	1 cut(s)	51
SatI	GCNGC	1 cut(s)	87
Sau3AI	GATC	1 cut(s)	21
SchI	GAGTC	1 cut(s)	113
SetI	ASST	2 cut(s)	41, 153
SfaNI	GCATC	2 cut(s)	34, 126
SfcI	CTRYAG	1 cut(s)	34
SgrAI	CRCCGGYG	1 cut(s)	70
SsiI	CCGC	2 cut(s)	86, 89
SspMI	CTAG	1 cut(s)	161
TaqI	TCGA	1 cut(s)	42
TauI	GCSGC	1 cut(s)	89
TfiI	GAWTC	1 cut(s)	164
Tru1I	TTAA	1 cut(s)	51
Tru9I	TTAA	1 cut(s)	51
TscAI	CASTG	1 cut(s)	148
TseFI	GTSAC	1 cut(s)	55
Tsp45I	GTSAC	1 cut(s)	55
TspRI	CASTG	1 cut(s)	148
VspI	ATTAAT	1 cut(s)	51
XbaI	TCTAGA	1 cut(s)	160
XmiI	GTMKAC	1 cut(s)	33
XspI	CTAG	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.