Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0014648

Physical Location & Seq

Genomic Coordinates Forward (+)

45689551 .. 45691012

Gene Structure 1462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG364400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGAAATCAGTACTAAATCGAGGAATTCACAATTCTAGATTTATATATCCCTACATCTTGGCCAAACTACTTGTATATAACACATGTCTTTCCTCTGCAATTGGTACAAGTCGGACTCTAATACGCTATCATATAATGTGTGATTCACCCATCCCTCAAATGGCGTTCTCCTCACCCTTTATCGTACCCGATTCGCCAGACCAAGTCAAAGATGCTTGTGACGAGAACGAAGCTAATTCCAAGGACGTTATCATGTCCAACAAGACCACCGAGCAGACAAAAAAGAAGAGGAAGAAGAAGAAGAAGAAGACAAGGCTTGCAGAGGAAACGAAGCAAGTCGACATCAACGGACCTGAAAAAGAAAATCAATCTGATGATGAGGAACAAGACCCGAAAAACAAGAGGGTGAAAGTAGCAGCTTCACCGGCTCCAGAAGAGAACAAATCCAACACCAAATCGTCTTGTGCTGGAATAACATGGAGCAAAGACGATGAGATTGTTATTTTGGGCGGCCTGATCTCGTTTCAGGGAGACGAGAGAGAGTATAAAAGCAAGGAATTTTATGAATACATAAAGAGTCGCCTCAGCCAGGGAGATTTGAACCAAGTAAGGGACAAAGTAAAATCCCTCAGGAGAAAATATATGGGGATGCAGAATCAGACGTTCTTAGAAACTTTCCAGAAGGGGCGTTACCAAGAGATGAAGGTGTTCAACTTGTCCAAAATTTATTGGGGTAAGTTTGATGCTGCTGATGATGACAAATTAAACAATCAGAAGGAGGAAACAATACTAGTGCAGGTGGCTGACGATGAGGAGGAGGAGAATGATGAGGAGGAGGAGGAAAAGGAGGAGGAAACAATACAAGTGAAGGTGGCGGACGATGAGAAGATGATTGATGATGATGATCAGAGCAAGCCAAAGATTAGTGGATTTCTTCGTCGTGGTTTGAGAGACCATTTTCGGAGAGAGCACTTTGATCGCAGGTGGGCTGAGGAGCAGGATCTCGAGGACTTGGAGAACAAGTGGAAGGCATACAAAATTGCTGAGGCCGAATCGAATTTGGCCGAAGCCCATTTTCGTAAAGCGCTCAACTGCTGCACTCTCAAGGCCTACCGGATCTTTGGATATCAAAATAATTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0097159 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF573

Protein Analysis

380

Amino Acids

44.27

Weight (kDa)

5.61

Isoelectric Point (pI)

56.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GeBP-like_DBD	PF04504	159 - 245	4.5e-14	Glabrous-enhancer-binding protein-like family, DBD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014648)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g28310
rosa_chinensis	RchiOBHm_Chr3g0496791
rosa_laevigata	RLG00000008047 RLG00000022502 RLG00000027947
rosa_multiflora	Rmu_sc0004684.1_g000029 Rmu_sc0013168.1_g000001 Rmu_sc0013725.1_g000002
rosa_roxburghii	Rroxscaffold_2G00136000 Rroxscaffold_6G00388700
rosa_rugosa	Rorug03G0287300
rosa_samantha	Rh3AG331500 Rh3BG343000 Rh3BG368000 Rh3CG364400 Rh3DG367600 Rh7DG330000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	787, 972
Acc36I	ACCTGC	2 cut(s)	787, 972
AccI	GTMKAC	1 cut(s)	339
AciI	CCGC	2 cut(s)	510, 875
AclWI	GGATC	2 cut(s)	1008, 1124
AcoI	YGGCCR	2 cut(s)	60, 1062
AcsI	RAATTY	4 cut(s)	24, 557, 723, 1057
AfaI	GTAC	3 cut(s)	12, 106, 186
AfeI	AGCGCT	1 cut(s)	1086
AfiI	CCNNNNNNNGG	3 cut(s)	160, 589, 610
AflIII	ACRYGT	1 cut(s)	83
AgsI	TTSAA	2 cut(s)	601, 712
AhlI	ACTAGT	1 cut(s)	790
AjnI	CCWGG	1 cut(s)	588
AluBI	AGCT	2 cut(s)	233, 419
AluI	AGCT	2 cut(s)	233, 419
Alw21I	GWGCWC	1 cut(s)	972
Alw26I	GTCTC	2 cut(s)	525, 945
AlwI	GGATC	2 cut(s)	1008, 1124
Ama87I	CYCGRG	1 cut(s)	1004
Aor51HI	AGCGCT	1 cut(s)	1086
AoxI	GGCC	5 cut(s)	60, 511, 1047, 1062, 1107
ApeKI	GCWGC	3 cut(s)	416, 746, 1095
ApoI	RAATTY	4 cut(s)	24, 557, 723, 1057
Asp700I	GAANNNNTTC	1 cut(s)	707
AspLEI	GCGC	1 cut(s)	1087
AspS9I	GGNCC	1 cut(s)	350
AsuHPI	GGTGA	4 cut(s)	138, 165, 414, 418
AvaI	CYCGRG	1 cut(s)	1004
AvaII	GGWCC	1 cut(s)	350
AxyI	CCTNAGG	1 cut(s)	629
BalI	TGGCCA	1 cut(s)	62
BarI	GAAGNNNNNNTAC	2 cut(s)	674, 706
BbsI	GAAGAC	1 cut(s)	314
Bbv12I	GWGCWC	1 cut(s)	972
BbvCI	CCTCAGC	3 cut(s)	584, 990, 1044
BbvI	GCAGC	3 cut(s)	428, 733, 1082
BccI	CCATC	1 cut(s)	158
BcgI	CGANNNNNNTGC	2 cut(s)	959, 993
BciT130I	CCWGG	1 cut(s)	590
BclI	TGATCA	1 cut(s)	904
BcoDI	GTCTC	2 cut(s)	525, 945
BcuI	ACTAGT	1 cut(s)	790
BfaI	CTAG	3 cut(s)	36, 791, 1141
BfoI	RGCGCY	1 cut(s)	1088
BfuAI	ACCTGC	2 cut(s)	787, 972
BisI	GCNGC	4 cut(s)	417, 511, 747, 1096
BlsI	GCNGC	4 cut(s)	418, 512, 748, 1097
BmcAI	AGTACT	1 cut(s)	12
Bme1390I	CCNGG	1 cut(s)	590
Bme18I	GGWCC	1 cut(s)	350
BmeT110I	CYCGRG	1 cut(s)	1004
BmgT120I	GGNCC	1 cut(s)	350
BmiI	GGNNCC	1 cut(s)	429
BmrFI	CCNGG	1 cut(s)	590
BmsI	GCATC	3 cut(s)	202, 639, 733
BpiI	GAAGAC	1 cut(s)	314
BpmI	CTGGAG	1 cut(s)	414
Bpu10I	CCTNAGC	3 cut(s)	584, 990, 1044
BpuEI	CTTGAG	1 cut(s)	1088
BsaBI	GATNNNNATC	1 cut(s)	903
BsaI	GGTCTC	1 cut(s)	945
BsaJI	CCNNGG	2 cut(s)	240, 589
BsaWI	WCCGGW	1 cut(s)	1113
BsaXI	ACNNNNNCTCC	2 cut(s)	1007, 1037
Bsc4I	CCNNNNNNNGG	3 cut(s)	160, 589, 610
Bse118I	RCCGGY	1 cut(s)	424
Bse21I	CCTNAGG	1 cut(s)	629
Bse8I	GATNNNNATC	1 cut(s)	903
BseBI	CCWGG	1 cut(s)	590
BseDI	CCNNGG	2 cut(s)	240, 589
BseGI	GGATG	2 cut(s)	150, 654
BseJI	GATNNNNATC	1 cut(s)	903
BseLI	CCNNNNNNNGG	3 cut(s)	160, 589, 610
BseMII	CTCAG	4 cut(s)	598, 643, 981, 1035
BseRI	GAGGAG	9 cut(s)	160, 827, 830, 833, 845, 848, 851, 863, 1007
BseXI	GCAGC	3 cut(s)	428, 733, 1082
BsgI	GTGCAG	2 cut(s)	815, 1081
BshFI	GGCC	5 cut(s)	62, 513, 1049, 1064, 1109
BsiHKAI	GWGCWC	1 cut(s)	972
BsiHKCI	CYCGRG	1 cut(s)	1004
BsiSI	CCGG	2 cut(s)	425, 1114
BslFI	GGGAC	1 cut(s)	626
BslI	CCNNNNNNNGG	3 cut(s)	160, 589, 610
BsmAI	GTCTC	2 cut(s)	525, 945
BsmBI	CGTCTC	1 cut(s)	525
BsmFI	GGGAC	1 cut(s)	626
BsnI	GGCC	5 cut(s)	62, 513, 1049, 1064, 1109
Bso31I	GGTCTC	1 cut(s)	945
BsoBI	CYCGRG	1 cut(s)	1004
Bsp1286I	GDGCHC	1 cut(s)	972
Bsp143I	GATC	5 cut(s)	516, 904, 976, 1000, 1116
BspACI	CCGC	2 cut(s)	510, 875
BspANI	GGCC	5 cut(s)	62, 513, 1049, 1064, 1109
BspCNI	CTCAG	4 cut(s)	597, 642, 982, 1036
BspLI	GGNNCC	1 cut(s)	429
BspMI	ACCTGC	2 cut(s)	787, 972
BspPI	GGATC	2 cut(s)	1008, 1124
BspTNI	GGTCTC	1 cut(s)	945
BsrFI	RCCGGY	1 cut(s)	424
BssAI	RCCGGY	1 cut(s)	424
BssECI	CCNNGG	2 cut(s)	240, 589
BssMI	GATC	5 cut(s)	516, 904, 976, 1000, 1116
BssT1I	CCWWGG	1 cut(s)	240
Bst2UI	CCWGG	1 cut(s)	590
Bst6I	CTCTTC	2 cut(s)	281, 429
BstC8I	GCNNGC	2 cut(s)	318, 914
BstDEI	CTNAG	5 cut(s)	584, 629, 667, 990, 1044
BstENI	CCTNNNNNAGG	1 cut(s)	587
BstF5I	GGATG	2 cut(s)	150, 654
BstH2I	RGCGCY	1 cut(s)	1088
BstHHI	GCGC	1 cut(s)	1087
BstKTI	GATC	5 cut(s)	519, 907, 979, 1003, 1119
BstMAI	GTCTC	2 cut(s)	525, 945
BstMBI	GATC	5 cut(s)	516, 904, 976, 1000, 1116
BstMWI	GCNNNNNNNGC	1 cut(s)	425
BstNI	CCWGG	1 cut(s)	590
BstNSI	RCATGY	1 cut(s)	87
BstSCI	CCNGG	1 cut(s)	588
BstV1I	GCAGC	3 cut(s)	428, 733, 1082
BstV2I	GAAGAC	1 cut(s)	314
BstX2I	RGATCY	2 cut(s)	1000, 1116
BstYI	RGATCY	2 cut(s)	1000, 1116
Bsu36I	CCTNAGG	1 cut(s)	629
BsuRI	GGCC	5 cut(s)	62, 513, 1049, 1064, 1109
BtsCI	GGATG	2 cut(s)	150, 654
BveI	ACCTGC	2 cut(s)	787, 972
Cac8I	GCNNGC	2 cut(s)	318, 914
CfoI	GCGC	1 cut(s)	1087
Cfr10I	RCCGGY	1 cut(s)	424
Cfr13I	GGNCC	1 cut(s)	350
Csp6I	GTAC	3 cut(s)	11, 105, 185
CviAII	CATG	3 cut(s)	84, 253, 477
CviQI	GTAC	3 cut(s)	11, 105, 185
DdeI	CTNAG	5 cut(s)	584, 629, 667, 990, 1044
DpnI	GATC	5 cut(s)	518, 906, 978, 1002, 1118
DpnII	GATC	5 cut(s)	516, 904, 976, 1000, 1116
EaeI	YGGCCR	2 cut(s)	60, 1062
Eam1104I	CTCTTC	2 cut(s)	281, 429
EarI	CTCTTC	2 cut(s)	281, 429
EciI	GGCGGA	1 cut(s)	890
Eco130I	CCWWGG	1 cut(s)	240
Eco147I	AGGCCT	1 cut(s)	1109
Eco31I	GGTCTC	1 cut(s)	945
Eco32I	GATATC	1 cut(s)	1127
Eco47I	GGWCC	1 cut(s)	350
Eco47III	AGCGCT	1 cut(s)	1086
Eco81I	CCTNAGG	1 cut(s)	629
Eco88I	CYCGRG	1 cut(s)	1004
EcoNI	CCTNNNNNAGG	1 cut(s)	587
EcoRI	GAATTC	1 cut(s)	24
EcoRII	CCWGG	1 cut(s)	588
EcoRV	GATATC	1 cut(s)	1127
EcoT14I	CCWWGG	1 cut(s)	240
ErhI	CCWWGG	1 cut(s)	240
Esp3I	CGTCTC	1 cut(s)	525
FaeI	CATG	3 cut(s)	87, 256, 480
FaqI	GGGAC	1 cut(s)	626
FatI	CATG	3 cut(s)	83, 252, 476
FbaI	TGATCA	1 cut(s)	904
FblI	GTMKAC	1 cut(s)	339
Fnu4HI	GCNGC	4 cut(s)	417, 511, 747, 1096
FokI	GGATG	2 cut(s)	137, 661
Fsp4HI	GCNGC	4 cut(s)	417, 511, 747, 1096
FspBI	CTAG	3 cut(s)	36, 791, 1141
GlaI	GCGC	1 cut(s)	1086
GluI	GCNGC	4 cut(s)	417, 511, 747, 1096
GsuI	CTGGAG	1 cut(s)	414
HaeII	RGCGCY	1 cut(s)	1088
HaeIII	GGCC	5 cut(s)	62, 513, 1049, 1064, 1109
HapII	CCGG	2 cut(s)	425, 1114
HhaI	GCGC	1 cut(s)	1087
Hin1II	CATG	3 cut(s)	87, 256, 480
Hin6I	GCGC	1 cut(s)	1085
HinP1I	GCGC	1 cut(s)	1085
HincII	GTYRAC	1 cut(s)	340
HindII	GTYRAC	1 cut(s)	340
HinfI	GANTC	6 cut(s)	115, 143, 191, 577, 655, 1052
HpaII	CCGG	2 cut(s)	425, 1114
HphI	GGTGA	4 cut(s)	138, 165, 414, 418
Hpy166II	GTNNAC	1 cut(s)	340
Hpy188I	TCNGA	6 cut(s)	114, 373, 660, 774, 909, 963
Hpy188III	TCNNGA	5 cut(s)	36, 431, 631, 679, 1004
Hpy8I	GTNNAC	1 cut(s)	340
Hpy99I	CGWCG	1 cut(s)	942
HpyAV	CCTTC	5 cut(s)	676, 697, 769, 862, 1021
HpyCH4IV	ACGT	2 cut(s)	246, 662
HpyCH4V	TGCA	5 cut(s)	98, 320, 652, 796, 1098
HpyF10VI	GCNNNNNNNGC	1 cut(s)	425
HpyF3I	CTNAG	5 cut(s)	584, 629, 667, 990, 1044
HpySE526I	ACGT	2 cut(s)	246, 662
Hsp92II	CATG	3 cut(s)	87, 256, 480
HspAI	GCGC	1 cut(s)	1085
Ksp22I	TGATCA	1 cut(s)	904
Kzo9I	GATC	5 cut(s)	516, 904, 976, 1000, 1116
LmnI	GCTCC	3 cut(s)	433, 480, 994
Lsp1109I	GCAGC	3 cut(s)	428, 733, 1082
LweI	GCATC	3 cut(s)	202, 639, 733
MaeI	CTAG	3 cut(s)	36, 791, 1141
MaeII	ACGT	2 cut(s)	246, 662
MaeIII	GTNAC	2 cut(s)	218, 689
MalI	GATC	5 cut(s)	518, 906, 978, 1002, 1118
MboI	GATC	5 cut(s)	516, 904, 976, 1000, 1116
MfeI	CAATTG	1 cut(s)	99
MflI	RGATCY	2 cut(s)	1000, 1116
MhlI	GDGCHC	1 cut(s)	972
MlsI	TGGCCA	1 cut(s)	62
MluNI	TGGCCA	1 cut(s)	62
MlyI	GAGTC	2 cut(s)	109, 586
MmeI	TCCRAC	3 cut(s)	92, 282, 471
Mox20I	TGGCCA	1 cut(s)	62
MroXI	GAANNNNTTC	1 cut(s)	707
MscI	TGGCCA	1 cut(s)	62
MseI	TTAA	1 cut(s)	764
Msp20I	TGGCCA	1 cut(s)	62
MspI	CCGG	2 cut(s)	425, 1114
MspR9I	CCNGG	1 cut(s)	590
MunI	CAATTG	1 cut(s)	99
MvaI	CCWGG	1 cut(s)	590
MwoI	GCNNNNNNNGC	1 cut(s)	425
NdeII	GATC	5 cut(s)	516, 904, 976, 1000, 1116
NlaIII	CATG	3 cut(s)	87, 256, 480
NlaIV	GGNNCC	1 cut(s)	429
NmuCI	GTSAC	1 cut(s)	218
NspI	RCATGY	1 cut(s)	87
PaeR7I	CTCGAG	1 cut(s)	1004
PaqCI	CACCTGC	2 cut(s)	787, 972
PceI	AGGCCT	1 cut(s)	1109
PciI	ACATGT	1 cut(s)	83
PdmI	GAANNNNTTC	1 cut(s)	707
PfeI	GAWTC	4 cut(s)	143, 191, 655, 1052
PflFI	GACNNNGTC	1 cut(s)	203
PkrI	GCNGC	4 cut(s)	418, 512, 748, 1097
PleI	GAGTC	2 cut(s)	109, 585
PpsI	GAGTC	2 cut(s)	109, 585
PscI	ACATGT	1 cut(s)	83
Psp6I	CCWGG	1 cut(s)	588
PspGI	CCWGG	1 cut(s)	588
PspN4I	GGNNCC	1 cut(s)	429
PspPI	GGNCC	1 cut(s)	350
PsuI	RGATCY	2 cut(s)	1000, 1116
PsyI	GACNNNGTC	1 cut(s)	203
RsaI	GTAC	3 cut(s)	12, 106, 186
RsaNI	GTAC	3 cut(s)	11, 105, 185
SalI	GTCGAC	1 cut(s)	338
SaqAI	TTAA	1 cut(s)	764
SatI	GCNGC	4 cut(s)	417, 511, 747, 1096
Sau3AI	GATC	5 cut(s)	516, 904, 976, 1000, 1116
Sau96I	GGNCC	1 cut(s)	350
ScaI	AGTACT	1 cut(s)	12
SchI	GAGTC	2 cut(s)	109, 586
ScrFI	CCNGG	1 cut(s)	590
SduI	GDGCHC	1 cut(s)	972
SetI	ASST	9 cut(s)	235, 249, 355, 421, 665, 708, 801, 873, 986
SfaNI	GCATC	3 cut(s)	202, 639, 733
Sfr274I	CTCGAG	1 cut(s)	1004
SinI	GGWCC	1 cut(s)	350
SlaI	CTCGAG	1 cut(s)	1004
SmlI	CTYRAG	2 cut(s)	1004, 1103
SmoI	CTYRAG	2 cut(s)	1004, 1103
SpeI	ACTAGT	1 cut(s)	790
SseBI	AGGCCT	1 cut(s)	1109
SsiI	CCGC	2 cut(s)	510, 875
SspMI	CTAG	3 cut(s)	36, 791, 1141
StuI	AGGCCT	1 cut(s)	1109
StyD4I	CCNGG	1 cut(s)	588
StyI	CCWWGG	1 cut(s)	240
TaiI	ACGT	2 cut(s)	249, 665
TaqI	TCGA	4 cut(s)	19, 339, 1005, 1055
TatI	WGTACW	1 cut(s)	10
TauI	GCSGC	1 cut(s)	513
TfiI	GAWTC	4 cut(s)	143, 191, 655, 1052
Tru1I	TTAA	1 cut(s)	764
Tru9I	TTAA	1 cut(s)	764
TseFI	GTSAC	1 cut(s)	218
TseI	GCWGC	3 cut(s)	416, 746, 1095
Tsp45I	GTSAC	1 cut(s)	218
TspDTI	ATGAA	3 cut(s)	17, 579, 716
TspGWI	ACGGA	1 cut(s)	363
Tth111I	GACNNNGTC	1 cut(s)	203
VpaK11BI	GGWCC	1 cut(s)	350
XagI	CCTNNNNNAGG	1 cut(s)	587
XapI	RAATTY	4 cut(s)	24, 557, 723, 1057
XbaI	TCTAGA	1 cut(s)	35
XceI	RCATGY	1 cut(s)	87
XcmI	CCANNNNNNNNNTGG	1 cut(s)	157
XhoI	CTCGAG	1 cut(s)	1004
XmiI	GTMKAC	1 cut(s)	339
XmnI	GAANNNNTTC	1 cut(s)	707
XspI	CTAG	3 cut(s)	36, 791, 1141
ZrmI	AGTACT	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.