Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0014648

Physical Location & Seq

Genomic Coordinates Reverse (-)

40057000 .. 40069476

Gene Structure 12477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG330000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGTGGTTGCTTATAAAACCCAAAAAGCAGGGACCAAATCCCTCCTCCTGTTTTCTCTTTTTTCCCAACATTCAAAACCTGTTTCGGTGAAGCAAACCAAGCAAGCCCATGCTCGTATCATCGTCTCCGGCCTCACCGCCAACACCCAACTCATGGCTCACCTCCTCTGCTCCCTTGCTCTCTCCTCATCAACCCCATTTCACTATTCTCTCTCTCTTTACCACTCTATCACACACCCCACTGTTTTCGCCTCCAATAACATGATCCGCTGCTTCTCCAAAAGCCACTCACCCCGACACTCCCTGCTTCTCTACTCTTCAATGCTGCGAAGAAGCTGCTATTCCCAACCCAACAACCACACTTTCACTTTCTTGTTGCAAGCTTGCAGCGAGGCCTCCGCGCTCTGCGAAGGAGCTCAGGTCCATGTTCAAGCACTCAAACATGGTTTCGCTGACTTCGTACAGCTCTCTTTCTTCCTCCTTTGGTTTCAAATTGAGCTCCCGATCTTCGTCATCTACGGCTTCGATGCCATCAATGTCACAGAGCATGCGCCGGCGGCTCTCGGCGAGGCTGGATTGGCGACGGTGGTGGTTGAGTCCTACGCGCACATCTTCTTTACGAACTGGGTGGCCACCGGCAAGGTGTACCCTCAACTGGAGTCATTGACTTCACCGGCTCCAACGTCTTCCACATGGTCGGAGGATGCACCGCCGCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

239

Amino Acids

26.36

Weight (kDa)

8.6

Isoelectric Point (pI)

44.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	80 - 130	5e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014648)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g28310
rosa_chinensis	RchiOBHm_Chr3g0496791
rosa_laevigata	RLG00000008047 RLG00000022502 RLG00000027947
rosa_multiflora	Rmu_sc0004684.1_g000029 Rmu_sc0013168.1_g000001 Rmu_sc0013725.1_g000002
rosa_roxburghii	Rroxscaffold_2G00136000 Rroxscaffold_6G00388700
rosa_rugosa	Rorug03G0287300
rosa_samantha	Rh3AG331500 Rh3BG343000 Rh3BG368000 Rh3CG364400 Rh3DG367600 Rh7DG330000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	15
AccB7I	CCANNNNNTGG	1 cut(s)	154
AccII	CGCG	2 cut(s)	401, 605
AciI	CCGC	6 cut(s)	138, 268, 399, 557, 710, 713
AclWI	GGATC	1 cut(s)	259
AcoI	YGGCCR	1 cut(s)	630
AfaI	GTAC	2 cut(s)	462, 647
AfiI	CCNNNNNNNGG	2 cut(s)	154, 655
AgsI	TTSAA	4 cut(s)	75, 321, 431, 491
AluBI	AGCT	5 cut(s)	336, 383, 416, 466, 499
AluI	AGCT	5 cut(s)	336, 383, 416, 466, 499
Alw21I	GWGCWC	2 cut(s)	418, 501
Alw26I	GTCTC	1 cut(s)	130
AlwI	GGATC	1 cut(s)	259
AoxI	GGCC	3 cut(s)	130, 393, 630
ApeKI	GCWGC	4 cut(s)	270, 325, 336, 387
AspLEI	GCGC	3 cut(s)	403, 553, 607
AspS9I	GGNCC	2 cut(s)	33, 421
AsuHPI	GGTGA	5 cut(s)	100, 127, 152, 282, 663
AvaII	GGWCC	2 cut(s)	33, 421
BalI	TGGCCA	1 cut(s)	632
BanII	GRGCYC	2 cut(s)	418, 501
BbsI	GAAGAC	1 cut(s)	678
Bbv12I	GWGCWC	2 cut(s)	418, 501
BbvI	GCAGC	4 cut(s)	257, 312, 323, 399
BccI	CCATC	1 cut(s)	539
BceAI	ACGGC	1 cut(s)	535
BcgI	CGANNNNNNTGC	2 cut(s)	318, 352
BcoDI	GTCTC	1 cut(s)	130
BisI	GCNGC	6 cut(s)	271, 326, 337, 388, 558, 713
BlsI	GCNGC	6 cut(s)	272, 327, 338, 389, 559, 714
Bme18I	GGWCC	2 cut(s)	33, 421
BmgT120I	GGNCC	2 cut(s)	33, 421
BmiI	GGNNCC	2 cut(s)	34, 678
BmrI	ACTGGG	1 cut(s)	634
BmsI	GCATC	2 cut(s)	517, 694
BmuI	ACTGGG	1 cut(s)	634
BpiI	GAAGAC	1 cut(s)	678
BpmI	CTGGAG	1 cut(s)	677
Bpu10I	CCTNAGC	1 cut(s)	417
BsaXI	ACNNNNNCTCC	2 cut(s)	405, 435
Bsc4I	CCNNNNNNNGG	2 cut(s)	154, 655
Bse118I	RCCGGY	3 cut(s)	553, 635, 673
Bse1I	ACTGG	2 cut(s)	629, 660
BseGI	GGATG	1 cut(s)	709
BseLI	CCNNNNNNNGG	2 cut(s)	154, 655
BseMII	CTCAG	1 cut(s)	431
BseNI	ACTGG	2 cut(s)	629, 660
BseRI	GAGGAG	3 cut(s)	35, 155, 175
BseXI	GCAGC	4 cut(s)	257, 312, 323, 399
Bsh1236I	CGCG	2 cut(s)	401, 605
BshFI	GGCC	3 cut(s)	132, 395, 632
BsiHKAI	GWGCWC	2 cut(s)	418, 501
BsiSI	CCGG	4 cut(s)	129, 554, 636, 674
BslFI	GGGAC	1 cut(s)	46
BslI	CCNNNNNNNGG	2 cut(s)	154, 655
BsmAI	GTCTC	1 cut(s)	130
BsmBI	CGTCTC	1 cut(s)	130
BsmFI	GGGAC	1 cut(s)	46
BsnI	GGCC	3 cut(s)	132, 395, 632
Bsp1286I	GDGCHC	2 cut(s)	418, 501
Bsp143I	GATC	2 cut(s)	264, 504
BspACI	CCGC	6 cut(s)	138, 268, 399, 557, 710, 713
BspANI	GGCC	3 cut(s)	132, 395, 632
BspCNI	CTCAG	1 cut(s)	430
BspFNI	CGCG	2 cut(s)	401, 605
BspLI	GGNNCC	2 cut(s)	34, 678
BspPI	GGATC	1 cut(s)	259
BsrFI	RCCGGY	3 cut(s)	553, 635, 673
BsrI	ACTGG	2 cut(s)	629, 660
BssAI	RCCGGY	3 cut(s)	553, 635, 673
BssMI	GATC	2 cut(s)	264, 504
Bst4CI	ACNGT	2 cut(s)	244, 586
Bst6I	CTCTTC	1 cut(s)	322
BstC8I	GCNNGC	5 cut(s)	105, 381, 385, 549, 555
BstDEI	CTNAG	1 cut(s)	417
BstF5I	GGATG	1 cut(s)	709
BstFNI	CGCG	2 cut(s)	401, 605
BstHHI	GCGC	3 cut(s)	403, 553, 607
BstKTI	GATC	2 cut(s)	267, 507
BstMAI	GTCTC	1 cut(s)	130
BstMBI	GATC	2 cut(s)	264, 504
BstMWI	GCNNNNNNNGC	3 cut(s)	100, 557, 578
BstNSI	RCATGY	1 cut(s)	551
BstUI	CGCG	2 cut(s)	401, 605
BstV1I	GCAGC	4 cut(s)	257, 312, 323, 399
BstV2I	GAAGAC	1 cut(s)	678
BsuRI	GGCC	3 cut(s)	132, 395, 632
BtsCI	GGATG	1 cut(s)	709
BtsIMutI	CAGTG	1 cut(s)	240
Cac8I	GCNNGC	5 cut(s)	105, 381, 385, 549, 555
CfoI	GCGC	3 cut(s)	403, 553, 607
Cfr10I	RCCGGY	3 cut(s)	553, 635, 673
Cfr13I	GGNCC	2 cut(s)	33, 421
Csp6I	GTAC	2 cut(s)	461, 646
CviAII	CATG	7 cut(s)	110, 154, 262, 425, 443, 548, 693
CviQI	GTAC	2 cut(s)	461, 646
DdeI	CTNAG	1 cut(s)	417
DpnI	GATC	2 cut(s)	266, 506
DpnII	GATC	2 cut(s)	264, 504
EaeI	YGGCCR	1 cut(s)	630
Eam1104I	CTCTTC	1 cut(s)	322
EarI	CTCTTC	1 cut(s)	322
Ecl136II	GAGCTC	2 cut(s)	416, 499
Eco147I	AGGCCT	1 cut(s)	395
Eco24I	GRGCYC	2 cut(s)	418, 501
Eco47I	GGWCC	2 cut(s)	33, 421
Eco53kI	GAGCTC	2 cut(s)	416, 499
EcoICRI	GAGCTC	2 cut(s)	416, 499
EcoT38I	GRGCYC	2 cut(s)	418, 501
Esp3I	CGTCTC	1 cut(s)	130
FaeI	CATG	7 cut(s)	113, 157, 265, 428, 446, 551, 696
FaiI	YATR	8 cut(s)	15, 111, 155, 263, 426, 444, 549, 694
FaqI	GGGAC	1 cut(s)	46
FatI	CATG	7 cut(s)	109, 153, 261, 424, 442, 547, 692
Fnu4HI	GCNGC	6 cut(s)	271, 326, 337, 388, 558, 713
FokI	GGATG	1 cut(s)	716
FriOI	GRGCYC	2 cut(s)	418, 501
Fsp4HI	GCNGC	6 cut(s)	271, 326, 337, 388, 558, 713
GlaI	GCGC	3 cut(s)	402, 552, 606
GluI	GCNGC	6 cut(s)	271, 326, 337, 388, 558, 713
GsuI	CTGGAG	1 cut(s)	677
HaeIII	GGCC	3 cut(s)	132, 395, 632
HapII	CCGG	4 cut(s)	129, 554, 636, 674
HhaI	GCGC	3 cut(s)	403, 553, 607
Hin1II	CATG	7 cut(s)	113, 157, 265, 428, 446, 551, 696
Hin6I	GCGC	3 cut(s)	401, 551, 605
HinP1I	GCGC	3 cut(s)	401, 551, 605
HindIII	AAGCTT	1 cut(s)	381
HinfI	GANTC	2 cut(s)	596, 659
HpaII	CCGG	4 cut(s)	129, 554, 636, 674
HphI	GGTGA	5 cut(s)	100, 127, 152, 282, 663
Hpy166II	GTNNAC	1 cut(s)	646
Hpy188I	TCNGA	1 cut(s)	700
Hpy188III	TCNNGA	1 cut(s)	502
Hpy8I	GTNNAC	1 cut(s)	646
Hpy99I	CGWCG	1 cut(s)	586
HpyAV	CCTTC	1 cut(s)	404
HpyCH4III	ACNGT	2 cut(s)	244, 586
HpyCH4IV	ACGT	1 cut(s)	683
HpyCH4V	TGCA	3 cut(s)	379, 387, 707
HpyF10VI	GCNNNNNNNGC	3 cut(s)	100, 557, 578
HpyF3I	CTNAG	1 cut(s)	417
HpySE526I	ACGT	1 cut(s)	683
Hsp92II	CATG	7 cut(s)	113, 157, 265, 428, 446, 551, 696
HspAI	GCGC	3 cut(s)	401, 551, 605
KroI	GCCGGC	1 cut(s)	553
KroNI	GCCGGC	1 cut(s)	555
Kzo9I	GATC	2 cut(s)	264, 504
LmnI	GCTCC	4 cut(s)	176, 413, 504, 682
Lsp1109I	GCAGC	4 cut(s)	257, 312, 323, 399
LweI	GCATC	2 cut(s)	517, 694
MaeII	ACGT	1 cut(s)	683
MaeIII	GTNAC	1 cut(s)	538
MalI	GATC	2 cut(s)	266, 506
MboI	GATC	2 cut(s)	264, 504
MboII	GAAGA	6 cut(s)	309, 342, 466, 499, 604, 678
MhlI	GDGCHC	2 cut(s)	418, 501
MlsI	TGGCCA	1 cut(s)	632
MluCI	AATT	1 cut(s)	492
MluNI	TGGCCA	1 cut(s)	632
MlyI	GAGTC	2 cut(s)	605, 668
MmeI	TCCRAC	2 cut(s)	678, 704
Mox20I	TGGCCA	1 cut(s)	632
MreI	CGCCGGCG	1 cut(s)	553
MroNI	GCCGGC	1 cut(s)	553
MscI	TGGCCA	1 cut(s)	632
Msp20I	TGGCCA	1 cut(s)	632
MspA1I	CMGCKG	1 cut(s)	270
MspI	CCGG	4 cut(s)	129, 554, 636, 674
MvnI	CGCG	2 cut(s)	401, 605
MwoI	GCNNNNNNNGC	3 cut(s)	100, 557, 578
NaeI	GCCGGC	1 cut(s)	555
NdeII	GATC	2 cut(s)	264, 504
NgoMIV	GCCGGC	1 cut(s)	553
NlaIII	CATG	7 cut(s)	113, 157, 265, 428, 446, 551, 696
NlaIV	GGNNCC	2 cut(s)	34, 678
NmeAIII	GCCGAG	1 cut(s)	543
NmuCI	GTSAC	1 cut(s)	538
NspI	RCATGY	1 cut(s)	551
PaeI	GCATGC	1 cut(s)	551
PceI	AGGCCT	1 cut(s)	395
PcsI	WCGNNNNNNNCGW	1 cut(s)	456
PdiI	GCCGGC	1 cut(s)	555
PflMI	CCANNNNNTGG	1 cut(s)	154
PkrI	GCNGC	6 cut(s)	272, 327, 338, 389, 559, 714
PleI	GAGTC	2 cut(s)	604, 667
PpsI	GAGTC	2 cut(s)	604, 667
PsiI	TTATAA	1 cut(s)	15
Psp124BI	GAGCTC	2 cut(s)	418, 501
PspN4I	GGNNCC	2 cut(s)	34, 678
PspPI	GGNCC	2 cut(s)	33, 421
RsaI	GTAC	2 cut(s)	462, 647
RsaNI	GTAC	2 cut(s)	461, 646
SacI	GAGCTC	2 cut(s)	418, 501
SatI	GCNGC	6 cut(s)	271, 326, 337, 388, 558, 713
Sau3AI	GATC	2 cut(s)	264, 504
Sau96I	GGNCC	2 cut(s)	33, 421
SchI	GAGTC	2 cut(s)	605, 668
SduI	GDGCHC	2 cut(s)	418, 501
SfaNI	GCATC	2 cut(s)	517, 694
SgrAI	CRCCGGYG	1 cut(s)	553
SinI	GGWCC	2 cut(s)	33, 421
SphI	GCATGC	1 cut(s)	551
Sse9I	AATT	1 cut(s)	492
SseBI	AGGCCT	1 cut(s)	395
SsiI	CCGC	6 cut(s)	138, 268, 399, 557, 710, 713
SstI	GAGCTC	2 cut(s)	418, 501
StuI	AGGCCT	1 cut(s)	395
TaaI	ACNGT	2 cut(s)	244, 586
TaiI	ACGT	1 cut(s)	686
TaqI	TCGA	1 cut(s)	525
TasI	AATT	1 cut(s)	492
TauI	GCSGC	2 cut(s)	560, 715
TscAI	CASTG	1 cut(s)	247
TseFI	GTSAC	1 cut(s)	538
TseI	GCWGC	4 cut(s)	270, 325, 336, 387
Tsp45I	GTSAC	1 cut(s)	538
TspRI	CASTG	1 cut(s)	247
Van91I	CCANNNNNTGG	1 cut(s)	154
VpaK11BI	GGWCC	2 cut(s)	33, 421
XceI	RCATGY	1 cut(s)	551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.