Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0014648

Physical Location & Seq

Genomic Coordinates Reverse (-)

24940258 .. 24941277

Gene Structure 1020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008047

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGAAGACGAAATCCAAGGCGTTAAAGATTTACGGCGATTTGAAGAAGGTGAAGCAGCCAATTTCACTGGAGCTCCAGATCTTCGTCGTTGATGGACAGCTCTCTTTCTTCCTCCTTTTATTTCGAATTGAGCTCTCGATCTTCGTCATCTATGGCTTCAACGCCGTTAACGTCACAACGCACGCGCCAGTGGCTCTTAGAGCTGCTGGAGTGGCGGCGGTGGTGGTGGAGTCCTACGCGCGCATCTTCTTCACAAACTCGGTGGCCACCGGTGAGGTATACCCTCTAGAATCGGAGATGAGGATTTGCGAGGAGTGCAGGACTGGTGATGTGGTGAGCATTGAGCTTAGCGAGAGCCGTTTGATCAATCACATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003861 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006551 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009081 GO:0009082 GO:0009098 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016053 GO:0016143 GO:0016144 GO:0016829 GO:0016835 GO:0016836 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046394 GO:0048229 GO:0048856 GO:0050896 GO:0071704 GO:0071840 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00290 ko00660 ko00966 ko01100 ko01110 ko01210 ko01230 map00290 map00660 map00966 map01100 map01110 map01210 map01230

Pfam Domains

Protein Families

Aconitase_C

Protein Analysis

126

Amino Acids

13.95

Weight (kDa)

6.73

Isoelectric Point (pI)

35.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aconitase_C	PF00694	61 - 91	1.6e-06	Aconitase C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014648)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g28310
rosa_chinensis	RchiOBHm_Chr3g0496791
rosa_laevigata	RLG00000008047 RLG00000022502 RLG00000027947
rosa_multiflora	Rmu_sc0004684.1_g000029 Rmu_sc0013168.1_g000001 Rmu_sc0013725.1_g000002
rosa_roxburghii	Rroxscaffold_2G00136000 Rroxscaffold_6G00388700
rosa_rugosa	Rorug03G0287300
rosa_samantha	Rh3AG331500 Rh3BG343000 Rh3BG368000 Rh3CG364400 Rh3DG367600 Rh7DG330000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	279
AccII	CGCG	3 cut(s)	185, 239, 241
AciI	CCGC	2 cut(s)	215, 218
AcoI	YGGCCR	1 cut(s)	264
AflIII	ACRYGT	1 cut(s)	372
AgeI	ACCGGT	1 cut(s)	269
AgsI	TTSAA	2 cut(s)	43, 160
AluBI	AGCT	5 cut(s)	73, 100, 133, 203, 346
AluI	AGCT	5 cut(s)	73, 100, 133, 203, 346
Alw21I	GWGCWC	2 cut(s)	75, 135
AoxI	GGCC	1 cut(s)	264
ApeKI	GCWGC	2 cut(s)	55, 203
AsiGI	ACCGGT	1 cut(s)	269
AspLEI	GCGC	3 cut(s)	187, 241, 243
AsuHPI	GGTGA	4 cut(s)	61, 284, 338, 346
AsuII	TTCGAA	1 cut(s)	124
BalI	TGGCCA	1 cut(s)	266
BanII	GRGCYC	2 cut(s)	75, 135
BbsI	GAAGAC	1 cut(s)	11
Bbv12I	GWGCWC	2 cut(s)	75, 135
BbvI	GCAGC	2 cut(s)	67, 190
BccI	CCATC	1 cut(s)	86
BceAI	ACGGC	3 cut(s)	49, 149, 342
BclI	TGATCA	1 cut(s)	363
BfaI	CTAG	1 cut(s)	287
BglII	AGATCT	1 cut(s)	78
BisI	GCNGC	3 cut(s)	56, 204, 216
BlpI	GCTNAGC	1 cut(s)	347
BlsI	GCNGC	3 cut(s)	57, 205, 217
BmsI	GCATC	1 cut(s)	252
BpiI	GAAGAC	1 cut(s)	11
BpmI	CTGGAG	3 cut(s)	59, 89, 228
Bpu1102I	GCTNAGC	1 cut(s)	347
Bpu14I	TTCGAA	1 cut(s)	124
BsaJI	CCNNGG	1 cut(s)	15
BsaWI	WCCGGW	1 cut(s)	269
BsaXI	ACNNNNNCTCC	2 cut(s)	57, 87
Bse118I	RCCGGY	1 cut(s)	269
Bse1I	ACTGG	3 cut(s)	72, 188, 328
BseDI	CCNNGG	1 cut(s)	15
BseNI	ACTGG	3 cut(s)	72, 188, 328
BsePI	GCGCGC	1 cut(s)	239
BseRI	GAGGAG	1 cut(s)	326
BseXI	GCAGC	2 cut(s)	67, 190
BsgI	GTGCAG	1 cut(s)	337
Bsh1236I	CGCG	3 cut(s)	185, 239, 241
BshFI	GGCC	1 cut(s)	266
BshTI	ACCGGT	1 cut(s)	269
BsiHKAI	GWGCWC	2 cut(s)	75, 135
BsiSI	CCGG	1 cut(s)	270
BsnI	GGCC	1 cut(s)	266
Bsp119I	TTCGAA	1 cut(s)	124
Bsp1286I	GDGCHC	2 cut(s)	75, 135
Bsp143I	GATC	3 cut(s)	78, 138, 363
Bsp1720I	GCTNAGC	1 cut(s)	347
BspACI	CCGC	2 cut(s)	215, 218
BspANI	GGCC	1 cut(s)	266
BspFNI	CGCG	3 cut(s)	185, 239, 241
BspT104I	TTCGAA	1 cut(s)	124
BsrFI	RCCGGY	1 cut(s)	269
BsrI	ACTGG	3 cut(s)	72, 188, 328
BssAI	RCCGGY	1 cut(s)	269
BssECI	CCNNGG	1 cut(s)	15
BssHII	GCGCGC	1 cut(s)	239
BssMI	GATC	3 cut(s)	78, 138, 363
BssNAI	GTATAC	1 cut(s)	280
BssT1I	CCWWGG	1 cut(s)	15
Bst1107I	GTATAC	1 cut(s)	280
BstBI	TTCGAA	1 cut(s)	124
BstC8I	GCNNGC	2 cut(s)	183, 241
BstDEI	CTNAG	2 cut(s)	197, 347
BstFNI	CGCG	3 cut(s)	185, 239, 241
BstHHI	GCGC	3 cut(s)	187, 241, 243
BstKTI	GATC	3 cut(s)	81, 141, 366
BstMBI	GATC	3 cut(s)	78, 138, 363
BstMWI	GCNNNNNNNGC	4 cut(s)	191, 200, 212, 315
BstNSI	RCATGY	1 cut(s)	376
BstUI	CGCG	3 cut(s)	185, 239, 241
BstV1I	GCAGC	2 cut(s)	67, 190
BstV2I	GAAGAC	1 cut(s)	11
BstX2I	RGATCY	1 cut(s)	78
BstYI	RGATCY	1 cut(s)	78
BstZ17I	GTATAC	1 cut(s)	280
BsuRI	GGCC	1 cut(s)	266
BtsIMutI	CAGTG	2 cut(s)	65, 195
Cac8I	GCNNGC	2 cut(s)	183, 241
CfoI	GCGC	3 cut(s)	187, 241, 243
Cfr10I	RCCGGY	1 cut(s)	269
CspAI	ACCGGT	1 cut(s)	269
CspCI	CAANNNNNGTGG	2 cut(s)	243, 278
CviAII	CATG	1 cut(s)	373
DdeI	CTNAG	2 cut(s)	197, 347
DpnI	GATC	3 cut(s)	80, 140, 365
DpnII	GATC	3 cut(s)	78, 138, 363
EaeI	YGGCCR	1 cut(s)	264
Ecl136II	GAGCTC	2 cut(s)	73, 133
Eco130I	CCWWGG	1 cut(s)	15
Eco24I	GRGCYC	2 cut(s)	75, 135
Eco53kI	GAGCTC	2 cut(s)	73, 133
EcoICRI	GAGCTC	2 cut(s)	73, 133
EcoT14I	CCWWGG	1 cut(s)	15
EcoT38I	GRGCYC	2 cut(s)	75, 135
ErhI	CCWWGG	1 cut(s)	15
FaeI	CATG	1 cut(s)	376
FaiI	YATR	3 cut(s)	153, 280, 374
FatI	CATG	1 cut(s)	372
FbaI	TGATCA	1 cut(s)	363
FblI	GTMKAC	1 cut(s)	279
Fnu4HI	GCNGC	3 cut(s)	56, 204, 216
FriOI	GRGCYC	2 cut(s)	75, 135
Fsp4HI	GCNGC	3 cut(s)	56, 204, 216
FspBI	CTAG	1 cut(s)	287
GlaI	GCGC	3 cut(s)	186, 240, 242
GluI	GCNGC	3 cut(s)	56, 204, 216
GsuI	CTGGAG	3 cut(s)	59, 89, 228
HaeIII	GGCC	1 cut(s)	266
HapII	CCGG	1 cut(s)	270
HhaI	GCGC	3 cut(s)	187, 241, 243
Hin1II	CATG	1 cut(s)	376
Hin6I	GCGC	3 cut(s)	185, 239, 241
HinP1I	GCGC	3 cut(s)	185, 239, 241
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HinfI	GANTC	2 cut(s)	230, 290
HpaI	GTTAAC	1 cut(s)	169
HpaII	CCGG	1 cut(s)	270
HphI	GGTGA	4 cut(s)	61, 284, 338, 346
Hpy166II	GTNNAC	2 cut(s)	169, 280
Hpy188I	TCNGA	1 cut(s)	295
Hpy188III	TCNNGA	3 cut(s)	76, 136, 287
Hpy8I	GTNNAC	2 cut(s)	169, 280
Hpy99I	CGWCG	1 cut(s)	89
HpyAV	CCTTC	1 cut(s)	40
HpyCH4IV	ACGT	1 cut(s)	171
HpyCH4V	TGCA	1 cut(s)	318
HpyF10VI	GCNNNNNNNGC	4 cut(s)	191, 200, 212, 315
HpyF3I	CTNAG	2 cut(s)	197, 347
HpySE526I	ACGT	1 cut(s)	171
Hsp92II	CATG	1 cut(s)	376
HspAI	GCGC	3 cut(s)	185, 239, 241
Ksp22I	TGATCA	1 cut(s)	363
KspAI	GTTAAC	1 cut(s)	169
Kzo9I	GATC	3 cut(s)	78, 138, 363
LmnI	GCTCC	2 cut(s)	70, 78
LpnPI	CCDG	7 cut(s)	53, 89, 192, 201, 283, 304, 309
Lsp1109I	GCAGC	2 cut(s)	67, 190
LweI	GCATC	1 cut(s)	252
MaeI	CTAG	1 cut(s)	287
MaeII	ACGT	1 cut(s)	171
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	3 cut(s)	80, 140, 365
MboI	GATC	3 cut(s)	78, 138, 363
MboII	GAAGA	7 cut(s)	16, 55, 73, 100, 133, 238, 241
MflI	RGATCY	1 cut(s)	78
MhlI	GDGCHC	2 cut(s)	75, 135
MlsI	TGGCCA	1 cut(s)	266
MluCI	AATT	2 cut(s)	60, 126
MluNI	TGGCCA	1 cut(s)	266
MlyI	GAGTC	1 cut(s)	239
MnlI	CCTC	5 cut(s)	122, 268, 294, 294, 304
Mox20I	TGGCCA	1 cut(s)	266
MscI	TGGCCA	1 cut(s)	266
MseI	TTAA	2 cut(s)	23, 168
Msp20I	TGGCCA	1 cut(s)	266
MspI	CCGG	1 cut(s)	270
MvnI	CGCG	3 cut(s)	185, 239, 241
MwoI	GCNNNNNNNGC	4 cut(s)	191, 200, 212, 315
NdeII	GATC	3 cut(s)	78, 138, 363
NlaIII	CATG	1 cut(s)	376
NmuCI	GTSAC	1 cut(s)	172
NspI	RCATGY	1 cut(s)	376
NspV	TTCGAA	1 cut(s)	124
PauI	GCGCGC	1 cut(s)	239
PciI	ACATGT	1 cut(s)	372
PcsI	WCGNNNNNNNCGW	1 cut(s)	168
PfeI	GAWTC	1 cut(s)	290
PinAI	ACCGGT	1 cut(s)	269
PkrI	GCNGC	3 cut(s)	57, 205, 217
PleI	GAGTC	1 cut(s)	238
PpsI	GAGTC	1 cut(s)	238
PscI	ACATGT	1 cut(s)	372
Psp124BI	GAGCTC	2 cut(s)	75, 135
PsuI	RGATCY	1 cut(s)	78
PteI	GCGCGC	1 cut(s)	239
SacI	GAGCTC	2 cut(s)	75, 135
SaqAI	TTAA	2 cut(s)	23, 168
SatI	GCNGC	3 cut(s)	56, 204, 216
Sau3AI	GATC	3 cut(s)	78, 138, 363
SchI	GAGTC	1 cut(s)	239
SduI	GDGCHC	2 cut(s)	75, 135
SetI	ASST	8 cut(s)	51, 75, 102, 135, 174, 205, 279, 348
SfaNI	GCATC	1 cut(s)	252
SfuI	TTCGAA	1 cut(s)	124
SgrAI	CRCCGGYG	1 cut(s)	269
Sse9I	AATT	2 cut(s)	60, 126
SsiI	CCGC	2 cut(s)	215, 218
SspMI	CTAG	1 cut(s)	287
SstI	GAGCTC	2 cut(s)	75, 135
StyI	CCWWGG	1 cut(s)	15
TaiI	ACGT	1 cut(s)	174
TaqI	TCGA	2 cut(s)	124, 137
TasI	AATT	2 cut(s)	60, 126
TauI	GCSGC	1 cut(s)	218
TfiI	GAWTC	1 cut(s)	290
Tru1I	TTAA	2 cut(s)	23, 168
Tru9I	TTAA	2 cut(s)	23, 168
TscAI	CASTG	2 cut(s)	72, 195
TseFI	GTSAC	1 cut(s)	172
TseI	GCWGC	2 cut(s)	55, 203
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	72, 195
XbaI	TCTAGA	1 cut(s)	286
XceI	RCATGY	1 cut(s)	376
XmiI	GTMKAC	1 cut(s)	279
XspI	CTAG	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.