Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0014648

Physical Location & Seq

Genomic Coordinates Reverse (-)

17087289 .. 17088424

Gene Structure 1136 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027947

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGAGATCGGTTGCATGCTCCATCGTGTTCTCCAAGACTGACGCCGATCAGTACACGCTTCTCTTCACCAACTGTCTCCAGCCACCATCTGTAACTGGAAAGAAGGGAAAGAAGACATGGCTCTCTTTCTTCCTCCTTTGGTTTCAAATTGAGTTCCCGATCTTCGTTGTCTACGGCTTCGACGCCATCAACGTCACAGAGCATGCGTCGGCGGCTCTCGGCTCAGCGGGATTGGCGGCTGTGGTGGCTGAGTCCTACGCACACATCTTCTTCACGAACTCGGTGGCCACCGGCAAGGTGTACCCTCGACTGGAGTCATCGACTTTGCCGGCACCGACGTCTTCCACATGGTCGGAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003861 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006551 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009081 GO:0009082 GO:0009098 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016053 GO:0016143 GO:0016144 GO:0016829 GO:0016835 GO:0016836 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046394 GO:0048229 GO:0048856 GO:0050896 GO:0071704 GO:0071840 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00290 ko00660 ko00966 ko01100 ko01110 ko01210 ko01230 map00290 map00660 map00966 map01100 map01110 map01210 map01230

Pfam Domains

Protein Families

Aconitase_C

Protein Analysis

121

Amino Acids

13.1

Weight (kDa)

6.05

Isoelectric Point (pI)

39.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014648)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g28310
rosa_chinensis	RchiOBHm_Chr3g0496791
rosa_laevigata	RLG00000008047 RLG00000022502 RLG00000027947
rosa_multiflora	Rmu_sc0004684.1_g000029 Rmu_sc0013168.1_g000001 Rmu_sc0013725.1_g000002
rosa_roxburghii	Rroxscaffold_2G00136000 Rroxscaffold_6G00388700
rosa_rugosa	Rorug03G0287300
rosa_samantha	Rh3AG331500 Rh3BG343000 Rh3BG368000 Rh3CG364400 Rh3DG367600 Rh7DG330000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	341
AccB1I	GGYRCC	1 cut(s)	331
AccI	GTMKAC	1 cut(s)	171
AciI	CCGC	3 cut(s)	212, 227, 236
AcoI	YGGCCR	1 cut(s)	285
AcyI	GRCGYC	3 cut(s)	42, 183, 338
AfaI	GTAC	2 cut(s)	53, 302
AfiI	CCNNNNNNNGG	1 cut(s)	310
AgsI	TTSAA	1 cut(s)	146
Alw26I	GTCTC	1 cut(s)	80
AoxI	GGCC	1 cut(s)	285
AsuHPI	GGTGA	1 cut(s)	58
BalI	TGGCCA	1 cut(s)	287
BanI	GGYRCC	1 cut(s)	331
BbsI	GAAGAC	2 cut(s)	119, 333
BccI	CCATC	3 cut(s)	29, 94, 194
BceAI	ACGGC	1 cut(s)	190
BcoDI	GTCTC	1 cut(s)	80
BisI	GCNGC	2 cut(s)	213, 237
BlpI	GCTNAGC	1 cut(s)	223
BlsI	GCNGC	2 cut(s)	214, 238
BmiI	GGNNCC	1 cut(s)	333
BoxI	GACNNNNGTC	1 cut(s)	313
BpiI	GAAGAC	2 cut(s)	119, 333
BpmI	CTGGAG	2 cut(s)	62, 332
Bpu1102I	GCTNAGC	1 cut(s)	223
BsaHI	GRCGYC	3 cut(s)	42, 183, 338
Bsc4I	CCNNNNNNNGG	1 cut(s)	310
Bse118I	RCCGGY	2 cut(s)	290, 328
Bse1I	ACTGG	2 cut(s)	100, 315
BseLI	CCNNNNNNNGG	1 cut(s)	310
BseMII	CTCAG	2 cut(s)	237, 240
BseNI	ACTGG	2 cut(s)	100, 315
BshFI	GGCC	1 cut(s)	287
BshNI	GGYRCC	1 cut(s)	331
BsiSI	CCGG	2 cut(s)	291, 329
BslI	CCNNNNNNNGG	1 cut(s)	310
BsmAI	GTCTC	1 cut(s)	80
BsnI	GGCC	1 cut(s)	287
Bsp143I	GATC	3 cut(s)	5, 46, 159
Bsp1720I	GCTNAGC	1 cut(s)	223
BspACI	CCGC	3 cut(s)	212, 227, 236
BspANI	GGCC	1 cut(s)	287
BspCNI	CTCAG	2 cut(s)	236, 241
BspLI	GGNNCC	1 cut(s)	333
BspT107I	GGYRCC	1 cut(s)	331
BsrFI	RCCGGY	2 cut(s)	290, 328
BsrI	ACTGG	2 cut(s)	100, 315
BssAI	RCCGGY	2 cut(s)	290, 328
BssMI	GATC	3 cut(s)	5, 46, 159
BssNI	GRCGYC	3 cut(s)	42, 183, 338
Bst4CI	ACNGT	1 cut(s)	74
Bst6I	CTCTTC	1 cut(s)	68
BstACI	GRCGYC	3 cut(s)	42, 183, 338
BstC8I	GCNNGC	3 cut(s)	16, 204, 330
BstDEI	CTNAG	2 cut(s)	223, 249
BstKTI	GATC	3 cut(s)	8, 49, 162
BstMAI	GTCTC	1 cut(s)	80
BstMBI	GATC	3 cut(s)	5, 46, 159
BstMWI	GCNNNNNNNGC	3 cut(s)	212, 233, 245
BstNSI	RCATGY	2 cut(s)	18, 206
BstPAI	GACNNNNGTC	1 cut(s)	313
BstV2I	GAAGAC	2 cut(s)	119, 333
BsuRI	GGCC	1 cut(s)	287
Cac8I	GCNNGC	3 cut(s)	16, 204, 330
Cfr10I	RCCGGY	2 cut(s)	290, 328
CseI	GACGC	3 cut(s)	50, 191, 195
Csp6I	GTAC	2 cut(s)	52, 301
CviAII	CATG	4 cut(s)	15, 117, 203, 348
CviJI	RGCY	8 cut(s)	82, 121, 177, 215, 222, 239, 248, 287
CviKI_1	RGCY	8 cut(s)	82, 121, 177, 215, 222, 239, 248, 287
CviQI	GTAC	2 cut(s)	52, 301
DdeI	CTNAG	2 cut(s)	223, 249
DpnI	GATC	3 cut(s)	7, 48, 161
DpnII	GATC	3 cut(s)	5, 46, 159
EaeI	YGGCCR	1 cut(s)	285
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
FaeI	CATG	4 cut(s)	18, 120, 206, 351
FaiI	YATR	4 cut(s)	16, 118, 204, 349
FatI	CATG	4 cut(s)	14, 116, 202, 347
FauI	CCCGC	1 cut(s)	220
FblI	GTMKAC	1 cut(s)	171
Fnu4HI	GCNGC	2 cut(s)	213, 237
Fsp4HI	GCNGC	2 cut(s)	213, 237
GluI	GCNGC	2 cut(s)	213, 237
GsuI	CTGGAG	2 cut(s)	62, 332
HaeIII	GGCC	1 cut(s)	287
HapII	CCGG	2 cut(s)	291, 329
HgaI	GACGC	3 cut(s)	50, 191, 195
Hin1I	GRCGYC	3 cut(s)	42, 183, 338
Hin1II	CATG	4 cut(s)	18, 120, 206, 351
HinfI	GANTC	2 cut(s)	251, 314
HpaII	CCGG	2 cut(s)	291, 329
HphI	GGTGA	1 cut(s)	58
Hpy166II	GTNNAC	3 cut(s)	54, 172, 301
Hpy188I	TCNGA	1 cut(s)	355
Hpy188III	TCNNGA	2 cut(s)	157, 274
Hpy8I	GTNNAC	3 cut(s)	54, 172, 301
Hpy99I	CGWCG	3 cut(s)	185, 211, 340
HpyAV	CCTTC	1 cut(s)	97
HpyCH4III	ACNGT	1 cut(s)	74
HpyCH4IV	ACGT	2 cut(s)	192, 338
HpyCH4V	TGCA	1 cut(s)	14
HpyF10VI	GCNNNNNNNGC	3 cut(s)	212, 233, 245
HpyF3I	CTNAG	2 cut(s)	223, 249
HpySE526I	ACGT	2 cut(s)	192, 338
Hsp92I	GRCGYC	3 cut(s)	42, 183, 338
Hsp92II	CATG	4 cut(s)	18, 120, 206, 351
KroI	GCCGGC	1 cut(s)	328
KroNI	GCCGGC	1 cut(s)	330
Kzo9I	GATC	3 cut(s)	5, 46, 159
LmnI	GCTCC	1 cut(s)	23
LpnPI	CCDG	5 cut(s)	81, 92, 296, 304, 342
MaeII	ACGT	2 cut(s)	192, 338
MaeIII	GTNAC	2 cut(s)	91, 193
MalI	GATC	3 cut(s)	7, 48, 161
MboI	GATC	3 cut(s)	5, 46, 159
MboII	GAAGA	7 cut(s)	55, 121, 124, 154, 259, 262, 333
MlsI	TGGCCA	1 cut(s)	287
MluCI	AATT	1 cut(s)	147
MluNI	TGGCCA	1 cut(s)	287
MlyI	GAGTC	2 cut(s)	260, 323
MmeI	TCCRAC	1 cut(s)	333
MnlI	CCTC	3 cut(s)	143, 315, 349
Mox20I	TGGCCA	1 cut(s)	287
MroNI	GCCGGC	1 cut(s)	328
MscI	TGGCCA	1 cut(s)	287
Msp20I	TGGCCA	1 cut(s)	287
MspA1I	CMGCKG	1 cut(s)	227
MspI	CCGG	2 cut(s)	291, 329
MwoI	GCNNNNNNNGC	3 cut(s)	212, 233, 245
NaeI	GCCGGC	1 cut(s)	330
NdeII	GATC	3 cut(s)	5, 46, 159
NgoMIV	GCCGGC	1 cut(s)	328
NlaIII	CATG	4 cut(s)	18, 120, 206, 351
NlaIV	GGNNCC	1 cut(s)	333
NmeAIII	GCCGAG	1 cut(s)	198
NmuCI	GTSAC	1 cut(s)	193
NspI	RCATGY	2 cut(s)	18, 206
PaeI	GCATGC	2 cut(s)	18, 206
PcsI	WCGNNNNNNNCGW	1 cut(s)	189
PdiI	GCCGGC	1 cut(s)	330
PkrI	GCNGC	2 cut(s)	214, 238
PleI	GAGTC	2 cut(s)	259, 322
PpsI	GAGTC	2 cut(s)	259, 322
PshAI	GACNNNNGTC	1 cut(s)	313
PspN4I	GGNNCC	1 cut(s)	333
RsaI	GTAC	2 cut(s)	53, 302
RsaNI	GTAC	2 cut(s)	52, 301
SatI	GCNGC	2 cut(s)	213, 237
Sau3AI	GATC	3 cut(s)	5, 46, 159
SchI	GAGTC	2 cut(s)	260, 323
SetI	ASST	3 cut(s)	195, 300, 341
SphI	GCATGC	2 cut(s)	18, 206
Sse9I	AATT	1 cut(s)	147
SsiI	CCGC	3 cut(s)	212, 227, 236
TaaI	ACNGT	1 cut(s)	74
TaiI	ACGT	2 cut(s)	195, 341
TaqI	TCGA	3 cut(s)	180, 307, 320
TasI	AATT	1 cut(s)	147
TatI	WGTACW	1 cut(s)	51
TauI	GCSGC	2 cut(s)	215, 239
TseFI	GTSAC	1 cut(s)	193
Tsp45I	GTSAC	1 cut(s)	193
XceI	RCATGY	2 cut(s)	18, 206
XmiI	GTMKAC	1 cut(s)	171
ZraI	GACGTC	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.