Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0007066

Physical Location & Seq

Genomic Coordinates Forward (+)

21080850 .. 21082456

Gene Structure 1607 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g28750.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1368 bp

ATGGAGGCAAGCAAGATTGCAACCATGTTGAAGTGGAGAAGTCCCAGGTTCATTCTAGTCCTAGTCTATGCTGTCCTGGAATGGGTGCTGTTAATACTCCTCCTCCTCAACTCTTTATTCAGTTACTTGATCACAAAGTTTGCCAGCTACTTTGGCCTCAAACCACCTTGTCCCTGGTGTTCTTCTAGAGTTGAACACATGCTGGAACCACAAAAGTCTTACTCAGATCTTGTATGTGAGATCCATGCCAATGAGATATCTAAACTGGGTTACTGTCTCAATCATAAAAGACTTGCTGAATCACATAGCATGTGTAGAAACTGCTTTTCTTCTCAACCAAATTGCAGAGAAAATTCTACTCAAAGTATGATGGATTTGATTACATTGTTGAGTGACAAAGATCACAAGAGACGGCCTTGCATTTGTTCTTGCTGCAGTAAGAGCTTTGACACCATACTCTCTCCTCTCTCATTGGAATATGCTGAGACAGGAAATTCAAACGTAGAAGCAGTGTATGGTGACAACAATGAACGCACAAGCAATCCGGATAGCATGTCAGTCCACATCAAAAATGGCTATGAGATGGAGACAACTTCTAGCTTAAGAGACACTACTGCAGAAGAGCACTGCCAAAACGAAAGTAAGAAACTTGTCCATCAATCTTCTAATGCTACTACCATTGAATACTGTTGCTTTCAAGAAGATCACTCTCTTGAAACCAACCCCCTTCCTTCTGAGAGTTGTATGGTCTGTCATCCTGGTTGCAGCCTGATTCCTACTGATTTGATTGATTTTTCAACTACGTTAGACAAAGGACTCATATACAGCTTAGAAGATCAGGAACATCTTGATGATAAACAAGGAAGTTTAAATTCCGAGTCAAAGATTGAATTGGAACATCAACTCTCAGGGGAAGAAGCTTTAGTACTCAGGGTTAAGTGTGGAGCAAATACAAGTAATGGAGAACTCAAGAGCTTGGAGATGGCCAAGGGATTTACTGATGCTTCATCTGTTGCACATGTTGAAAAGAGAAATCTAGAGTTGGTTGGCAAGCTAAGTGAAGATATGGTCACTGCTCCAGAAGGGCAAACTTCGTTCGTTGACACTGAACAACTAACAGATACCAATGAACCTAAAGATCCACAAGAATGTGAAGAAGAGAGAATTTTGGCTGTCATTCCAATATATCTATCAAACACAGAAGTGTCACACTATGCAGCTGATCGGCCTCAAGGTCACGAGGATTCTTCACTACCGTTCAGTAAAAACTTTTATGTGCCATCTCACAGTGATGTCGGACCTACAGGAAAATCAATGTTGCGAGACAAAACAAGTATAACCAAAATTGCTCAAGAAGACGGAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0008092 GO:0017022

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zein-binding

Protein Analysis

456

Amino Acids

50.9

Weight (kDa)

4.98

Isoelectric Point (pI)

45.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007066)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16720
fragaria_vesca	FvH4_1g28750 FvH4_1g28751
malus_domestica	MD09G1263700.v1.1 MD17G1258500.v1.1 MD17G1259000.v1.1
prunus_persica	Prupe.3G161200_v2.0.a1 Prupe.3G161200_v2.0.a1 Prupe.3G161200_v2.0.a1 Prupe.3G161200_v2.0.a1
pyrus_communis	pycom09g17760 pycom17g26040
rosa_chinensis	RchiOBHm_Chr3g0493141
rosa_laevigata	RLG00000022726
rosa_multiflora	Rmu_sc0008162.1_g000002 Rmu_sc0013424.1_g000015
rosa_roxburghii	Rroxscaffold_6G00391780
rosa_rugosa	Rorug03G0259400
rosa_samantha	Rh3AG308300 Rh3BG344500 Rh3CG341600 Rh3DG343800
rosa_wichuraiana	Rw0G002840 Rw0G018330 Rw3G027120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	544
AclWI	GGATC	2 cut(s)	235, 1133
AcoI	YGGCCR	1 cut(s)	984
AcsI	RAATTY	4 cut(s)	352, 493, 871, 1164
AfaI	GTAC	1 cut(s)	927
AfiI	CCNNNNNNNGG	1 cut(s)	82
AflII	CTTAAG	1 cut(s)	601
AflIII	ACRYGT	1 cut(s)	1018
AgsI	TTSAA	9 cut(s)	31, 194, 498, 683, 698, 716, 798, 890, 1025
AjnI	CCWGG	4 cut(s)	44, 75, 173, 757
AleI	CACNNNNGTG	1 cut(s)	1202
AluBI	AGCT	8 cut(s)	147, 444, 600, 828, 920, 975, 1054, 1220
AluI	AGCT	8 cut(s)	147, 444, 600, 828, 920, 975, 1054, 1220
Alw21I	GWGCWC	1 cut(s)	627
Alw26I	GTCTC	6 cut(s)	281, 403, 479, 581, 600, 1317
AlwI	GGATC	2 cut(s)	235, 1133
Aor13HI	TCCGGA	1 cut(s)	544
AoxI	GGCC	4 cut(s)	154, 413, 984, 1226
ApeKI	GCWGC	3 cut(s)	432, 765, 1217
ApoI	RAATTY	4 cut(s)	352, 493, 871, 1164
AspS9I	GGNCC	1 cut(s)	1298
AsuHPI	GGTGA	1 cut(s)	530
AvaII	GGWCC	1 cut(s)	1298
BalI	TGGCCA	1 cut(s)	986
BarI	GAAGNNNNNNTAC	2 cut(s)	909, 941
BauI	CACGAG	1 cut(s)	1238
BbsI	GAAGAC	1 cut(s)	1362
Bbv12I	GWGCWC	1 cut(s)	627
BbvI	GCAGC	3 cut(s)	419, 777, 1229
BccI	CCATC	5 cut(s)	364, 577, 663, 976, 1288
BceAI	ACGGC	1 cut(s)	428
BciT130I	CCWGG	4 cut(s)	46, 77, 175, 759
BclI	TGATCA	1 cut(s)	129
BcoDI	GTCTC	6 cut(s)	281, 403, 479, 581, 600, 1317
BfaI	CTAG	6 cut(s)	56, 62, 186, 597, 1037, 1366
BfmI	CTRYAG	3 cut(s)	433, 615, 1302
BfrI	CTTAAG	1 cut(s)	601
BglII	AGATCT	1 cut(s)	226
BisI	GCNGC	3 cut(s)	433, 766, 1218
BlsI	GCNGC	3 cut(s)	434, 767, 1219
BmcAI	AGTACT	1 cut(s)	927
Bme1390I	CCNGG	4 cut(s)	46, 77, 175, 759
Bme18I	GGWCC	1 cut(s)	1298
BmgT120I	GGNCC	1 cut(s)	1298
BmiI	GGNNCC	1 cut(s)	207
BmrFI	CCNGG	4 cut(s)	46, 77, 175, 759
BmrI	ACTGGG	1 cut(s)	275
BmsI	GCATC	1 cut(s)	991
BmuI	ACTGGG	1 cut(s)	275
BpiI	GAAGAC	1 cut(s)	1362
BpmI	CTGGAG	1 cut(s)	1062
BpuEI	CTTGAG	3 cut(s)	953, 1215, 1335
BsaJI	CCNNGG	3 cut(s)	44, 173, 987
BsaWI	WCCGGW	1 cut(s)	544
BsaXI	ACNNNNNCTCC	2 cut(s)	87, 117
Bsc4I	CCNNNNNNNGG	1 cut(s)	82
Bse1I	ACTGG	1 cut(s)	270
BseAI	TCCGGA	1 cut(s)	544
BseBI	CCWGG	4 cut(s)	46, 77, 175, 759
BseDI	CCNNGG	3 cut(s)	44, 173, 987
BseGI	GGATG	1 cut(s)	754
BseLI	CCNNNNNNNGG	1 cut(s)	82
BseMII	CTCAG	5 cut(s)	237, 474, 726, 921, 943
BseNI	ACTGG	1 cut(s)	270
BseRI	GAGGAG	4 cut(s)	89, 92, 95, 453
BseXI	GCAGC	3 cut(s)	419, 777, 1229
BshFI	GGCC	4 cut(s)	156, 415, 986, 1228
BsiHKAI	GWGCWC	1 cut(s)	627
BsiSI	CCGG	1 cut(s)	545
BslFI	GGGAC	2 cut(s)	27, 156
BslI	CCNNNNNNNGG	1 cut(s)	82
BsmAI	GTCTC	6 cut(s)	281, 403, 479, 581, 600, 1317
BsmBI	CGTCTC	1 cut(s)	403
BsmFI	GGGAC	2 cut(s)	27, 156
BsnI	GGCC	4 cut(s)	156, 415, 986, 1228
Bsp1286I	GDGCHC	1 cut(s)	627
Bsp13I	TCCGGA	1 cut(s)	544
Bsp143I	GATC	8 cut(s)	129, 226, 240, 400, 703, 835, 1138, 1222
BspANI	GGCC	4 cut(s)	156, 415, 986, 1228
BspCNI	CTCAG	5 cut(s)	236, 475, 727, 920, 942
BspEI	TCCGGA	1 cut(s)	544
BspLI	GGNNCC	1 cut(s)	207
BspMAI	CTGCAG	2 cut(s)	437, 619
BspPI	GGATC	2 cut(s)	235, 1133
BspQI	GCTCTTC	1 cut(s)	615
BspTI	CTTAAG	1 cut(s)	601
BsrI	ACTGG	1 cut(s)	270
BssECI	CCNNGG	3 cut(s)	44, 173, 987
BssMI	GATC	8 cut(s)	129, 226, 240, 400, 703, 835, 1138, 1222
BssSI	CACGAG	1 cut(s)	1238
BssT1I	CCWWGG	1 cut(s)	987
Bst2BI	CACGAG	1 cut(s)	1238
Bst2UI	CCWGG	4 cut(s)	46, 77, 175, 759
Bst4CI	ACNGT	4 cut(s)	275, 689, 1257, 1289
Bst6I	CTCTTC	2 cut(s)	615, 1152
BstAFI	CTTAAG	1 cut(s)	601
BstC8I	GCNNGC	3 cut(s)	10, 145, 1052
BstDEI	CTNAG	7 cut(s)	223, 483, 735, 829, 907, 929, 1055
BstF5I	GGATG	1 cut(s)	754
BstKTI	GATC	8 cut(s)	132, 229, 243, 403, 706, 838, 1141, 1225
BstMAI	GTCTC	6 cut(s)	281, 403, 479, 581, 600, 1317
BstMBI	GATC	8 cut(s)	129, 226, 240, 400, 703, 835, 1138, 1222
BstMWI	GCNNNNNNNGC	2 cut(s)	153, 441
BstNI	CCWGG	4 cut(s)	46, 77, 175, 759
BstNSI	RCATGY	4 cut(s)	202, 313, 556, 1022
BstSCI	CCNGG	4 cut(s)	44, 75, 173, 757
BstSFI	CTRYAG	3 cut(s)	433, 615, 1302
BstV1I	GCAGC	3 cut(s)	419, 777, 1229
BstV2I	GAAGAC	1 cut(s)	1362
BstX2I	RGATCY	3 cut(s)	226, 240, 1138
BstYI	RGATCY	3 cut(s)	226, 240, 1138
BsuRI	GGCC	4 cut(s)	156, 415, 986, 1228
BtsCI	GGATG	1 cut(s)	754
BtsI	GCAGTG	3 cut(s)	516, 625, 1071
BtsIMutI	CAGTG	5 cut(s)	516, 625, 1071, 1104, 1294
Cac8I	GCNNGC	3 cut(s)	10, 145, 1052
Cfr13I	GGNCC	1 cut(s)	1298
Csp6I	GTAC	1 cut(s)	926
CviAII	CATG	6 cut(s)	25, 199, 245, 310, 553, 1019
CviQI	GTAC	1 cut(s)	926
DdeI	CTNAG	7 cut(s)	223, 483, 735, 829, 907, 929, 1055
DpnI	GATC	8 cut(s)	131, 228, 242, 402, 705, 837, 1140, 1224
DpnII	GATC	8 cut(s)	129, 226, 240, 400, 703, 835, 1138, 1222
DraI	TTTAAA	1 cut(s)	870
EaeI	YGGCCR	1 cut(s)	984
Eam1104I	CTCTTC	2 cut(s)	615, 1152
EarI	CTCTTC	2 cut(s)	615, 1152
Eco130I	CCWWGG	1 cut(s)	987
Eco32I	GATATC	1 cut(s)	258
Eco47I	GGWCC	1 cut(s)	1298
EcoRII	CCWGG	4 cut(s)	44, 75, 173, 757
EcoRV	GATATC	1 cut(s)	258
EcoT14I	CCWWGG	1 cut(s)	987
ErhI	CCWWGG	1 cut(s)	987
Esp3I	CGTCTC	1 cut(s)	403
FaeI	CATG	6 cut(s)	28, 202, 248, 313, 556, 1022
FaqI	GGGAC	2 cut(s)	27, 156
FatI	CATG	6 cut(s)	24, 198, 244, 309, 552, 1018
FbaI	TGATCA	1 cut(s)	129
Fnu4HI	GCNGC	3 cut(s)	433, 766, 1218
FokI	GGATG	1 cut(s)	741
Fsp4HI	GCNGC	3 cut(s)	433, 766, 1218
FspBI	CTAG	6 cut(s)	56, 62, 186, 597, 1037, 1366
GluI	GCNGC	3 cut(s)	433, 766, 1218
GsuI	CTGGAG	1 cut(s)	1062
HaeIII	GGCC	4 cut(s)	156, 415, 986, 1228
HapII	CCGG	1 cut(s)	545
Hin1II	CATG	6 cut(s)	28, 202, 248, 313, 556, 1022
HincII	GTYRAC	1 cut(s)	1102
HindII	GTYRAC	1 cut(s)	1102
HindIII	AAGCTT	1 cut(s)	918
HinfI	GANTC	5 cut(s)	299, 772, 816, 878, 1244
HpaII	CCGG	1 cut(s)	545
HphI	GGTGA	1 cut(s)	530
Hpy166II	GTNNAC	2 cut(s)	562, 1102
Hpy188I	TCNGA	4 cut(s)	226, 736, 877, 1298
Hpy8I	GTNNAC	2 cut(s)	562, 1102
HpyAV	CCTTC	3 cut(s)	737, 741, 1076
HpyCH4III	ACNGT	4 cut(s)	275, 689, 1257, 1289
HpyCH4IV	ACGT	2 cut(s)	501, 803
HpyCH4V	TGCA	8 cut(s)	20, 345, 420, 435, 617, 765, 1016, 1217
HpyF10VI	GCNNNNNNNGC	2 cut(s)	153, 441
HpyF3I	CTNAG	7 cut(s)	223, 483, 735, 829, 907, 929, 1055
HpySE526I	ACGT	2 cut(s)	501, 803
Hsp92II	CATG	6 cut(s)	28, 202, 248, 313, 556, 1022
Kpn2I	TCCGGA	1 cut(s)	544
Ksp22I	TGATCA	1 cut(s)	129
Kzo9I	GATC	8 cut(s)	129, 226, 240, 400, 703, 835, 1138, 1222
LguI	GCTCTTC	1 cut(s)	615
LmnI	GCTCC	2 cut(s)	944, 1081
Lsp1109I	GCAGC	3 cut(s)	419, 777, 1229
LweI	GCATC	1 cut(s)	991
MaeI	CTAG	6 cut(s)	56, 62, 186, 597, 1037, 1366
MaeII	ACGT	2 cut(s)	501, 803
MaeIII	GTNAC	7 cut(s)	122, 269, 392, 518, 1069, 1206, 1235
MalI	GATC	8 cut(s)	131, 228, 242, 402, 705, 837, 1140, 1224
MboI	GATC	8 cut(s)	129, 226, 240, 400, 703, 835, 1138, 1222
MflI	RGATCY	3 cut(s)	226, 240, 1138
MhlI	GDGCHC	1 cut(s)	627
MlsI	TGGCCA	1 cut(s)	986
MluCI	AATT	7 cut(s)	340, 352, 493, 871, 890, 1164, 1344
MluNI	TGGCCA	1 cut(s)	986
MlyI	GAGTC	2 cut(s)	810, 887
MmeI	TCCRAC	1 cut(s)	1276
MnlI	CCTC	7 cut(s)	110, 113, 116, 167, 474, 1234, 1239
Mox20I	TGGCCA	1 cut(s)	986
MroI	TCCGGA	1 cut(s)	544
MscI	TGGCCA	1 cut(s)	986
MseI	TTAA	4 cut(s)	92, 602, 869, 936
MslI	CAYNNNNRTG	5 cut(s)	249, 849, 1147, 1202, 1290
Msp20I	TGGCCA	1 cut(s)	986
MspA1I	CMGCKG	1 cut(s)	1220
MspCI	CTTAAG	1 cut(s)	601
MspI	CCGG	1 cut(s)	545
MspR9I	CCNGG	4 cut(s)	46, 77, 175, 759
MvaI	CCWGG	4 cut(s)	46, 77, 175, 759
MwoI	GCNNNNNNNGC	2 cut(s)	153, 441
NdeII	GATC	8 cut(s)	129, 226, 240, 400, 703, 835, 1138, 1222
NlaIII	CATG	6 cut(s)	28, 202, 248, 313, 556, 1022
NlaIV	GGNNCC	1 cut(s)	207
NmuCI	GTSAC	5 cut(s)	392, 518, 1069, 1206, 1235
NspI	RCATGY	4 cut(s)	202, 313, 556, 1022
OliI	CACNNNNGTG	1 cut(s)	1202
PciI	ACATGT	1 cut(s)	1018
PciSI	GCTCTTC	1 cut(s)	615
PfeI	GAWTC	3 cut(s)	299, 772, 1244
PfoI	TCCNGGA	1 cut(s)	75
PkrI	GCNGC	3 cut(s)	434, 767, 1219
PleI	GAGTC	2 cut(s)	810, 886
PpsI	GAGTC	2 cut(s)	810, 886
PscI	ACATGT	1 cut(s)	1018
Psp6I	CCWGG	4 cut(s)	44, 75, 173, 757
PspGI	CCWGG	4 cut(s)	44, 75, 173, 757
PspN4I	GGNNCC	1 cut(s)	207
PspPI	GGNCC	1 cut(s)	1298
PstI	CTGCAG	2 cut(s)	437, 619
PsuI	RGATCY	3 cut(s)	226, 240, 1138
PvuII	CAGCTG	1 cut(s)	1220
RsaI	GTAC	1 cut(s)	927
RsaNI	GTAC	1 cut(s)	926
RseI	CAYNNNNRTG	5 cut(s)	249, 849, 1147, 1202, 1290
SapI	GCTCTTC	1 cut(s)	615
SaqAI	TTAA	4 cut(s)	92, 602, 869, 936
SatI	GCNGC	3 cut(s)	433, 766, 1218
Sau3AI	GATC	8 cut(s)	129, 226, 240, 400, 703, 835, 1138, 1222
Sau96I	GGNCC	1 cut(s)	1298
ScaI	AGTACT	1 cut(s)	927
SchI	GAGTC	2 cut(s)	810, 887
ScrFI	CCNGG	4 cut(s)	46, 77, 175, 759
SduI	GDGCHC	1 cut(s)	627
SfaNI	GCATC	1 cut(s)	991
SfcI	CTRYAG	3 cut(s)	433, 615, 1302
SinI	GGWCC	1 cut(s)	1298
SmiMI	CAYNNNNRTG	5 cut(s)	249, 849, 1147, 1202, 1290
SmlI	CTYRAG	4 cut(s)	601, 968, 1230, 1350
SmoI	CTYRAG	4 cut(s)	601, 968, 1230, 1350
Sse9I	AATT	7 cut(s)	340, 352, 493, 871, 890, 1164, 1344
SspMI	CTAG	6 cut(s)	56, 62, 186, 597, 1037, 1366
StyD4I	CCNGG	4 cut(s)	44, 75, 173, 757
StyI	CCWWGG	1 cut(s)	987
TaaI	ACNGT	4 cut(s)	275, 689, 1257, 1289
TaiI	ACGT	2 cut(s)	504, 806
TasI	AATT	7 cut(s)	340, 352, 493, 871, 890, 1164, 1344
TatI	WGTACW	1 cut(s)	925
TfiI	GAWTC	3 cut(s)	299, 772, 1244
Tru1I	TTAA	4 cut(s)	92, 602, 869, 936
Tru9I	TTAA	4 cut(s)	92, 602, 869, 936
TscAI	CASTG	5 cut(s)	516, 632, 1078, 1111, 1294
TseFI	GTSAC	5 cut(s)	392, 518, 1069, 1206, 1235
TseI	GCWGC	3 cut(s)	432, 765, 1217
Tsp45I	GTSAC	5 cut(s)	392, 518, 1069, 1206, 1235
TspDTI	ATGAA	4 cut(s)	40, 543, 996, 1143
TspRI	CASTG	5 cut(s)	516, 632, 1078, 1111, 1294
Vha464I	CTTAAG	1 cut(s)	601
VpaK11BI	GGWCC	1 cut(s)	1298
XapI	RAATTY	4 cut(s)	352, 493, 871, 1164
XbaI	TCTAGA	2 cut(s)	185, 1036
XceI	RCATGY	4 cut(s)	202, 313, 556, 1022
XcmI	CCANNNNNNNNNTGG	2 cut(s)	171, 569
XspI	CTAG	6 cut(s)	56, 62, 186, 597, 1037, 1366
ZrmI	AGTACT	1 cut(s)	927

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.