Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013424.1

Orthogroup ID

OG0007066

Physical Location & Seq

Genomic Coordinates Reverse (-)

48271 .. 50409

Gene Structure 2139 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013424.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1905 bp

atggtctgtgatcttggttgcagcctgattcctactgatttgattgatttttcaactacaatagacgaaggactcataaacagcttaaaagatcaggaacatcatgatcatgaacaaggaagttttgattccaagtcaaagattaaattggaagatcaactctcacgggaagcagcattactcatggtaactaagagtgtagcaaatacaagtaatggaggacttaagagcttggagatggccaaggaatttactgatgcttcatctattgaacaagtggaaaagcgaaatctagagttggttggcaagctatgtgatgatttggtcactgctccagaagctcaaacttcgttcgttgacactgaacaactaacagataccaaagaacctaacgatccaccagaatgtgaagaagagagaattttggccatcatttcaagaaatctgtcaaacacaaaagggtcacaccatgcagccgatcagcctcaagctcacaaggattcttcactgccattccttgaaatatccaatgtgccagctcacagtgatgtcggtacagggcttacaggaaaatcaatgttgcaagacaaaacaagtagaactaaaaatgctcaagaagtcaaccatttttgcatgtgttcagagcctagtgaacctgaggaagagaggttggtatgcggacaaaattgtataaacactatccattacttgtacaaaaagccgaatggaaatggagaatgtggggcagatgatgggagtgtggcaaatgtgacgaatggtggagaacctgtaacaaccattgaagagctcaaagcagcattgaaggctgaaagtaaagctttaagcgctttatattcagaactagaagaagagagaagtgcatctgcagtagctgccaaccagactatggctatgataacaaggcttcaagaagagaaggcagcaatgcagatggaggcattgcaatatcagagaatgatggaagaacaatctgagtatgatcaggaagccttgcaacttttgaatgagttgatgaacaaaatggagagggaaaaacaagagctagagaaagaattggaaatatatcagaagaaagtcctggattatgaggaaaaagagaagataagggtcatgagcagaatcaaatatggaagtatgagaagtagaaattcttctgcttcctgcagccaatcttgggatagtgatgcgctatccattgatctcaattgtgaagcaagggatgaagatagttctttccctcaagaatgcaataacaacaccaataatccagatgaggcagaagctctaagcttggaagaaatggctatggattgtgttaagcagatgagcattcttgatgactcattggcaggcttccaggaagagaggttgtcagttctggatcagcttaaagcattggaagataggctagtagtgttgagtgaaaatgagaactgctctcaggatgctaatttagtcgagaattgctcaaactacagtaccaaaaacattgaagaaaatcatgatttcagcagtccagaagaaaaacaaatatcagatgagaaaataacattggcttccatggcaaagaggcttcttccacttttgggtgtagcagctgaggataatgaaactgaagcaggtttaacaaatgaaaaacaagtcagaactgaatctattgcaatgcataactcggtgaccaattctgaattgcatgataccagaatagccattgaggaggaggtggatcatgtttatgagaggctacaagctcttgaaaaaagtaatttggagaaggggatggatcttcttcaagagagcttgcaacatctccgggatttgagggatgttgaactccgcataagaaacattaatgttcctgtggatgaagctgcaggtaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0008092 GO:0017022

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zein-binding

Protein Analysis

634

Amino Acids

70.84

Weight (kDa)

4.52

Isoelectric Point (pI)

54.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007066)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16720
fragaria_vesca	FvH4_1g28750 FvH4_1g28751
malus_domestica	MD09G1263700.v1.1 MD17G1258500.v1.1 MD17G1259000.v1.1
prunus_persica	Prupe.3G161200_v2.0.a1 Prupe.3G161200_v2.0.a1 Prupe.3G161200_v2.0.a1 Prupe.3G161200_v2.0.a1
pyrus_communis	pycom09g17760 pycom17g26040
rosa_chinensis	RchiOBHm_Chr3g0493141
rosa_laevigata	RLG00000022726
rosa_multiflora	Rmu_sc0008162.1_g000002 Rmu_sc0013424.1_g000015
rosa_roxburghii	Rroxscaffold_6G00391780
rosa_rugosa	Rorug03G0259400
rosa_samantha	Rh3AG308300 Rh3BG344500 Rh3CG341600 Rh3DG343800
rosa_wichuraiana	Rw0G002840 Rw0G018330 Rw3G027120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	1631, 1886
AccB7I	CCANNNNNTGG	1 cut(s)	907
AciI	CCGC	2 cut(s)	678, 1858
AclWI	GGATC	4 cut(s)	389, 1410, 1755, 1812
AcoI	YGGCCR	2 cut(s)	240, 426
AcsI	RAATTY	3 cut(s)	248, 420, 1168
AcuI	CTGAAG	1 cut(s)	1656
AfaI	GTAC	3 cut(s)	556, 713, 1501
AfeI	AGCGCT	1 cut(s)	847
AfiI	CCNNNNNNNGG	3 cut(s)	907, 1195, 1607
AflII	CTTAAG	1 cut(s)	224
AjnI	CCWGG	2 cut(s)	1098, 1377
AjuI	GAANNNNNNNTTGG	2 cut(s)	1556, 1588
Alw21I	GWGCWC	1 cut(s)	810
AlwI	GGATC	4 cut(s)	389, 1410, 1755, 1812
AlwNI	CAGNNNCTG	1 cut(s)	893
Aor51HI	AGCGCT	1 cut(s)	847
AoxI	GGCC	2 cut(s)	240, 426
ApeKI	GCWGC	9 cut(s)	21, 173, 473, 815, 893, 941, 1185, 1616, 1892
ApoI	RAATTY	3 cut(s)	248, 420, 1168
AseI	ATTAAT	1 cut(s)	1872
Asp700I	GAANNNNTTC	1 cut(s)	1171
AspLEI	GCGC	2 cut(s)	848, 1210
AsuC2I	CCSGG	1 cut(s)	1835
AsuHPI	GGTGA	1 cut(s)	1708
AxyI	CCTNAGG	1 cut(s)	657
BaeI	ACNNNNGTAYC	2 cut(s)	1483, 1516
BalI	TGGCCA	2 cut(s)	242, 428
BanII	GRGCYC	1 cut(s)	810
BarI	GAAGNNNNNNTAC	4 cut(s)	162, 194, 1156, 1188
Bbv12I	GWGCWC	1 cut(s)	810
BbvCI	CCTCAGC	1 cut(s)	1620
BbvI	GCAGC	9 cut(s)	33, 185, 485, 827, 880, 953, 1197, 1628, 1879
BccI	CCATC	6 cut(s)	232, 437, 746, 946, 973, 1795
BciT130I	CCWGG	2 cut(s)	1100, 1379
BclI	TGATCA	2 cut(s)	106, 1000
BcnI	CCSGG	1 cut(s)	1835
BfaI	CTAG	5 cut(s)	293, 648, 863, 1064, 1430
BfmI	CTRYAG	4 cut(s)	885, 1183, 1495, 1893
BfoI	RGCGCY	1 cut(s)	849
BfrI	CTTAAG	1 cut(s)	224
BfuAI	ACCTGC	2 cut(s)	1631, 1886
BisI	GCNGC	9 cut(s)	22, 174, 474, 816, 894, 942, 1186, 1617, 1893
BlsI	GCNGC	9 cut(s)	23, 175, 475, 817, 895, 943, 1187, 1618, 1894
Bme1390I	CCNGG	3 cut(s)	1100, 1379, 1835
BmrFI	CCNGG	3 cut(s)	1100, 1379, 1835
BmsI	GCATC	4 cut(s)	247, 890, 1195, 1456
BplI	GAGNNNNNCTC	4 cut(s)	1442, 1474, 1472, 1504
BpmI	CTGGAG	1 cut(s)	318
Bpu10I	CCTNAGC	1 cut(s)	1620
BpuEI	CTTGAG	3 cut(s)	471, 597, 1245
BpuMI	CCSGG	1 cut(s)	1835
BsaJI	CCNNGG	2 cut(s)	243, 1581
BsaXI	ACNNNNNCTCC	2 cut(s)	774, 804
Bsc4I	CCNNNNNNNGG	3 cut(s)	907, 1195, 1607
Bse21I	CCTNAGG	1 cut(s)	657
Bse3DI	GCAATG	3 cut(s)	951, 959, 1689
BseBI	CCWGG	2 cut(s)	1100, 1379
BseDI	CCNNGG	2 cut(s)	243, 1581
BseGI	GGATG	5 cut(s)	1246, 1471, 1806, 1852, 1891
BseLI	CCNNNNNNNGG	3 cut(s)	907, 1195, 1607
BseMI	GCAATG	3 cut(s)	951, 959, 1689
BseMII	CTCAG	4 cut(s)	648, 984, 1475, 1611
BseRI	GAGGAG	2 cut(s)	1751, 1754
BseXI	GCAGC	9 cut(s)	33, 185, 485, 827, 880, 953, 1197, 1628, 1879
BshFI	GGCC	2 cut(s)	242, 428
BsiHKAI	GWGCWC	1 cut(s)	810
BsiSI	CCGG	1 cut(s)	1834
BslI	CCNNNNNNNGG	3 cut(s)	907, 1195, 1607
BsmI	GAATGC	2 cut(s)	1271, 1350
BsnI	GGCC	2 cut(s)	242, 428
Bsp1286I	GDGCHC	1 cut(s)	810
Bsp1407I	TGTACA	1 cut(s)	711
Bsp19I	CCATGG	1 cut(s)	1581
BspACI	CCGC	2 cut(s)	678, 1858
BspANI	GGCC	2 cut(s)	242, 428
BspCNI	CTCAG	4 cut(s)	649, 985, 1474, 1612
BspHI	TCATGA	4 cut(s)	103, 109, 1131, 1522
BspMAI	CTGCAG	3 cut(s)	889, 1187, 1897
BspMI	ACCTGC	2 cut(s)	1631, 1886
BspPI	GGATC	4 cut(s)	389, 1410, 1755, 1812
BspQI	GCTCTTC	1 cut(s)	798
BspTI	CTTAAG	1 cut(s)	224
BsrDI	GCAATG	3 cut(s)	951, 959, 1689
BsrGI	TGTACA	1 cut(s)	711
BssECI	CCNNGG	2 cut(s)	243, 1581
BssT1I	CCWWGG	2 cut(s)	243, 1581
Bst2UI	CCWGG	2 cut(s)	1100, 1379
Bst4CI	ACNGT	2 cut(s)	545, 1499
Bst6I	CTCTTC	6 cut(s)	408, 657, 798, 864, 927, 1377
BstAFI	CTTAAG	1 cut(s)	224
BstAPI	GCANNNNNTGC	1 cut(s)	893
BstAUI	TGTACA	1 cut(s)	711
BstC8I	GCNNGC	4 cut(s)	308, 537, 1372, 1823
BstDEI	CTNAG	6 cut(s)	192, 657, 993, 1307, 1461, 1620
BstDSI	CCRYGG	1 cut(s)	1581
BstEII	GGTNACC	1 cut(s)	1696
BstF5I	GGATG	5 cut(s)	1246, 1471, 1806, 1852, 1891
BstH2I	RGCGCY	1 cut(s)	849
BstHHI	GCGC	2 cut(s)	848, 1210
BstMWI	GCNNNNNNNGC	5 cut(s)	338, 824, 845, 893, 1583
BstNI	CCWGG	2 cut(s)	1100, 1379
BstNSI	RCATGY	1 cut(s)	637
BstPI	GGTNACC	1 cut(s)	1696
BstSCI	CCNGG	3 cut(s)	1098, 1377, 1833
BstSFI	CTRYAG	4 cut(s)	885, 1183, 1495, 1893
BstV1I	GCAGC	9 cut(s)	33, 185, 485, 827, 880, 953, 1197, 1628, 1879
BstX2I	RGATCY	1 cut(s)	1804
BstYI	RGATCY	1 cut(s)	1804
Bsu36I	CCTNAGG	1 cut(s)	657
BsuRI	GGCC	2 cut(s)	242, 428
BtgI	CCRYGG	1 cut(s)	1581
BtsCI	GGATG	5 cut(s)	1246, 1471, 1806, 1852, 1891
BtsI	GCAGTG	2 cut(s)	327, 506
BtsIMutI	CAGTG	4 cut(s)	327, 360, 506, 550
BveI	ACCTGC	2 cut(s)	1631, 1886
Cac8I	GCNNGC	4 cut(s)	308, 537, 1372, 1823
CaiI	CAGNNNCTG	1 cut(s)	893
CciI	TCATGA	4 cut(s)	103, 109, 1131, 1522
CfoI	GCGC	2 cut(s)	848, 1210
Csp6I	GTAC	3 cut(s)	555, 712, 1500
CviQI	GTAC	3 cut(s)	555, 712, 1500
DdeI	CTNAG	6 cut(s)	192, 657, 993, 1307, 1461, 1620
EaeI	YGGCCR	2 cut(s)	240, 426
Eam1104I	CTCTTC	6 cut(s)	408, 657, 798, 864, 927, 1377
EarI	CTCTTC	6 cut(s)	408, 657, 798, 864, 927, 1377
Ecl136II	GAGCTC	1 cut(s)	808
Eco130I	CCWWGG	2 cut(s)	243, 1581
Eco24I	GRGCYC	1 cut(s)	810
Eco47III	AGCGCT	1 cut(s)	847
Eco53kI	GAGCTC	1 cut(s)	808
Eco57I	CTGAAG	1 cut(s)	1656
Eco81I	CCTNAGG	1 cut(s)	657
Eco91I	GGTNACC	1 cut(s)	1696
EcoICRI	GAGCTC	1 cut(s)	808
EcoO65I	GGTNACC	1 cut(s)	1696
EcoRII	CCWGG	2 cut(s)	1098, 1377
EcoT14I	CCWWGG	2 cut(s)	243, 1581
EcoT22I	ATGCAT	1 cut(s)	1689
EcoT38I	GRGCYC	1 cut(s)	810
ErhI	CCWWGG	2 cut(s)	243, 1581
FalI	AAGNNNNNCTT	2 cut(s)	823, 855
FbaI	TGATCA	2 cut(s)	106, 1000
Fnu4HI	GCNGC	9 cut(s)	22, 174, 474, 816, 894, 942, 1186, 1617, 1893
FokI	GGATG	5 cut(s)	1253, 1478, 1813, 1859, 1898
FriOI	GRGCYC	1 cut(s)	810
Fsp4HI	GCNGC	9 cut(s)	22, 174, 474, 816, 894, 942, 1186, 1617, 1893
FspBI	CTAG	5 cut(s)	293, 648, 863, 1064, 1430
GlaI	GCGC	2 cut(s)	847, 1209
GluI	GCNGC	9 cut(s)	22, 174, 474, 816, 894, 942, 1186, 1617, 1893
GsuI	CTGGAG	1 cut(s)	318
HaeII	RGCGCY	1 cut(s)	849
HaeIII	GGCC	2 cut(s)	242, 428
HapII	CCGG	1 cut(s)	1834
HhaI	GCGC	2 cut(s)	848, 1210
Hin6I	GCGC	2 cut(s)	846, 1208
HinP1I	GCGC	2 cut(s)	846, 1208
HincII	GTYRAC	2 cut(s)	358, 622
HindII	GTYRAC	2 cut(s)	358, 622
HindIII	AAGCTT	2 cut(s)	837, 1309
HinfI	GANTC	7 cut(s)	28, 72, 128, 500, 1140, 1361, 1673
HpaII	CCGG	1 cut(s)	1834
HphI	GGTGA	1 cut(s)	1708
Hpy166II	GTNNAC	3 cut(s)	358, 622, 653
Hpy188I	TCNGA	8 cut(s)	643, 859, 972, 994, 1089, 1558, 1667, 1708
Hpy8I	GTNNAC	3 cut(s)	358, 622, 653
HpyAV	CCTTC	4 cut(s)	62, 817, 931, 1789
HpyCH4III	ACNGT	2 cut(s)	545, 1499
HpyF10VI	GCNNNNNNNGC	5 cut(s)	338, 824, 845, 893, 1583
HpyF3I	CTNAG	6 cut(s)	192, 657, 993, 1307, 1461, 1620
HspAI	GCGC	2 cut(s)	846, 1208
Ksp22I	TGATCA	2 cut(s)	106, 1000
LguI	GCTCTTC	1 cut(s)	798
LmnI	GCTCC	1 cut(s)	337
Lsp1109I	GCAGC	9 cut(s)	33, 185, 485, 827, 880, 953, 1197, 1628, 1879
LweI	GCATC	4 cut(s)	247, 890, 1195, 1456
MaeI	CTAG	5 cut(s)	293, 648, 863, 1064, 1430
MaeIII	GTNAC	6 cut(s)	187, 325, 462, 769, 790, 1696
MfeI	CAATTG	1 cut(s)	1225
MflI	RGATCY	1 cut(s)	1804
MhlI	GDGCHC	1 cut(s)	810
MlsI	TGGCCA	2 cut(s)	242, 428
MluNI	TGGCCA	2 cut(s)	242, 428
MlyI	GAGTC	2 cut(s)	66, 1355
Mox20I	TGGCCA	2 cut(s)	242, 428
Mph1103I	ATGCAT	1 cut(s)	1689
MroXI	GAANNNNTTC	1 cut(s)	1171
MscI	TGGCCA	2 cut(s)	242, 428
MseI	TTAA	8 cut(s)	86, 144, 225, 842, 1338, 1410, 1646, 1872
MslI	CAYNNNNRTG	4 cut(s)	108, 403, 546, 1755
Msp20I	TGGCCA	2 cut(s)	242, 428
MspA1I	CMGCKG	1 cut(s)	1619
MspCI	CTTAAG	1 cut(s)	224
MspI	CCGG	1 cut(s)	1834
MspR9I	CCNGG	3 cut(s)	1100, 1379, 1835
MunI	CAATTG	1 cut(s)	1225
Mva1269I	GAATGC	2 cut(s)	1271, 1350
MvaI	CCWGG	2 cut(s)	1100, 1379
MwoI	GCNNNNNNNGC	5 cut(s)	338, 824, 845, 893, 1583
NciI	CCSGG	1 cut(s)	1835
NcoI	CCATGG	1 cut(s)	1581
NmuCI	GTSAC	4 cut(s)	325, 462, 769, 1696
NsiI	ATGCAT	1 cut(s)	1689
NspI	RCATGY	1 cut(s)	637
PagI	TCATGA	4 cut(s)	103, 109, 1131, 1522
PciSI	GCTCTTC	1 cut(s)	798
PctI	GAATGC	2 cut(s)	1271, 1350
PdmI	GAANNNNTTC	1 cut(s)	1171
PfeI	GAWTC	5 cut(s)	28, 128, 500, 1140, 1673
PflMI	CCANNNNNTGG	1 cut(s)	907
PfoI	TCCNGGA	3 cut(s)	1098, 1377, 1833
PkrI	GCNGC	9 cut(s)	23, 175, 475, 817, 895, 943, 1187, 1618, 1894
PleI	GAGTC	2 cut(s)	66, 1355
PpsI	GAGTC	2 cut(s)	66, 1355
PshBI	ATTAAT	1 cut(s)	1872
Psp124BI	GAGCTC	1 cut(s)	810
Psp6I	CCWGG	2 cut(s)	1098, 1377
PspEI	GGTNACC	1 cut(s)	1696
PspGI	CCWGG	2 cut(s)	1098, 1377
PstI	CTGCAG	3 cut(s)	889, 1187, 1897
PstNI	CAGNNNCTG	1 cut(s)	893
PsuI	RGATCY	1 cut(s)	1804
PvuII	CAGCTG	1 cut(s)	1619
RsaI	GTAC	3 cut(s)	556, 713, 1501
RsaNI	GTAC	3 cut(s)	555, 712, 1500
RseI	CAYNNNNRTG	4 cut(s)	108, 403, 546, 1755
SacI	GAGCTC	1 cut(s)	810
SapI	GCTCTTC	1 cut(s)	798
SaqAI	TTAA	8 cut(s)	86, 144, 225, 842, 1338, 1410, 1646, 1872
SatI	GCNGC	9 cut(s)	22, 174, 474, 816, 894, 942, 1186, 1617, 1893
SchI	GAGTC	2 cut(s)	66, 1355
ScrFI	CCNGG	3 cut(s)	1100, 1379, 1835
SduI	GDGCHC	1 cut(s)	810
SfaNI	GCATC	4 cut(s)	247, 890, 1195, 1456
SfcI	CTRYAG	4 cut(s)	885, 1183, 1495, 1893
SmiMI	CAYNNNNRTG	4 cut(s)	108, 403, 546, 1755
SmlI	CTYRAG	4 cut(s)	224, 486, 612, 1260
SmoI	CTYRAG	4 cut(s)	224, 486, 612, 1260
SsiI	CCGC	2 cut(s)	678, 1858
SspMI	CTAG	5 cut(s)	293, 648, 863, 1064, 1430
SstI	GAGCTC	1 cut(s)	810
StyD4I	CCNGG	3 cut(s)	1098, 1377, 1833
StyI	CCWWGG	2 cut(s)	243, 1581
TaaI	ACNGT	2 cut(s)	545, 1499
TaqI	TCGA	1 cut(s)	1479
TatI	WGTACW	1 cut(s)	711
TfiI	GAWTC	5 cut(s)	28, 128, 500, 1140, 1673
Tru1I	TTAA	8 cut(s)	86, 144, 225, 842, 1338, 1410, 1646, 1872
Tru9I	TTAA	8 cut(s)	86, 144, 225, 842, 1338, 1410, 1646, 1872
TscAI	CASTG	4 cut(s)	334, 367, 513, 550
TseFI	GTSAC	4 cut(s)	325, 462, 769, 1696
TseI	GCWGC	9 cut(s)	21, 173, 473, 815, 893, 941, 1185, 1616, 1892
Tsp45I	GTSAC	4 cut(s)	325, 462, 769, 1696
TspDTI	ATGAA	7 cut(s)	126, 252, 1049, 1257, 1644, 1668, 1902
TspRI	CASTG	4 cut(s)	334, 367, 513, 550
Van91I	CCANNNNNTGG	1 cut(s)	907
Vha464I	CTTAAG	1 cut(s)	224
VspI	ATTAAT	1 cut(s)	1872
XapI	RAATTY	3 cut(s)	248, 420, 1168
XbaI	TCTAGA	1 cut(s)	292
XceI	RCATGY	1 cut(s)	637
XcmI	CCANNNNNNNNNTGG	1 cut(s)	904
XmnI	GAANNNNTTC	1 cut(s)	1171
XspI	CTAG	5 cut(s)	293, 648, 863, 1064, 1430
Zsp2I	ATGCAT	1 cut(s)	1689

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.