Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0007066

Physical Location & Seq

Genomic Coordinates Forward (+)

38025403 .. 38027473

Gene Structure 2071 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G027120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1596 bp

ATGGAGGCCAATAAGTTTGCAACCATGTTGAAGAGGAAAAGTCCCAGGTTCGTTCTAGTTCTAGTCTATGCAGTCCTCGAATGGGTGTTGTTAATACTCCTCCTGCTCAACTCTTTTTTCAGTTACTTGATCACAAAGTTTGCCAACTATTTTGGCCTCAAACCACCTTGTCCCTGGTGTTCTTCTAGAGTTGAGCACATGTTGGAACCACAAAAGTCTTACTCAGATCTTGTATGTGAGATCCATGCCAATGAGATATCTAAACTGGGTTACTGTCTCAATCATAAAAGACTGGCTGAATCACATAGTATGTGTGGGAACTGCTTTTCTTCTCAACCAAATTGCAGAGAAAATTCTACTCAAAGTGGGATGGATTTGATTTCATTGTTGAGTGACAAATATCAGAAGAAACCTTCCATCTGTTCTTGCTGCAGTAAGAGCTTCAACACCAAACTCTCTCCTCTTTCATTGGAGTATGCTCAGAAAGGAGATTCAAATATAGAAGCAGTGCATGATGACAACAATGAAGGCACAACCAAACCTGATAGCGTGTCAGTCCACAGCGAAAATGGCTATGAGATGGAGACAACTTCTAGCTTAAGAGACACTACTGCAGAAGAAAACTGTCGAAATGAAAGTAAGAAACTTGTCCATCAATCTTCCAATGCTACTACCATTGAGTACTGTTGCCTTCAAGAAGATCACTCTCTTGAAACTACCCCCCTTCCTTCTGAGAGTGGTATGGTCTGTGATCTTGGTTGCAGCCTGATTCCTACTGATTTGATTGATTTTTCAACTACAATAGACGAAGGACTCATAAACAGCTTAAAAGATCAGGAACATCATGATCATGAACAAGGAAGTTTTGATTCCAAGTCAAAGATTAAATTGGCAGATCAACTCTCACGGGAAGCAGCATTACTCATGGTAACTAAGAGTGGAGCAAATACAAGTAATGGAGGACTTAAGAGCTTGGAGATGGCCAAGGGATTTACTGATGCTTCATCTATTGAACAAGTGGAAAAGCGAAATCTAGAGTTGGTTGGCAAGCTATGTGATGATTTGGTCACTGCTCCAGAAGCTCAAACTTCGTTCGTTGACACTGAACAACTAACAGATACCAAAGAACCTAACGATCCCCAGAGAATTTTGGCCATCATTTCAAGAAATCTGTCAAACACAAAAGGGTCACACCATGCAGCCGATCAGCCTCAAGCTCACAAGGATTCTTCACTGCCATTCCTTGAAATATCCAATGTGCCAGCTCACAGTGATGTCGAACCTGAAACAACCATTGAAGAGCTTAAAGCAGCATTGAAGGCTGAAAGTAAAGCTTTAAGTGCTTTATATTCAGAACTAGAAGAAGAGAGAAGTGCATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCTGGTCAGGCCATGCCAAGCTATTTGGGTGGGCAGGACCAACCCTTTATATTTATATATGTATTTTTTTATTCAAAAATGTACAAAAAAAAAATTGAGAGATCTCTTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0008092 GO:0017022

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zein-binding

Protein Analysis

531

Amino Acids

55.39

Weight (kDa)

5.21

Isoelectric Point (pI)

47.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007066)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16720
fragaria_vesca	FvH4_1g28750 FvH4_1g28751
malus_domestica	MD09G1263700.v1.1 MD17G1258500.v1.1 MD17G1259000.v1.1
prunus_persica	Prupe.3G161200_v2.0.a1 Prupe.3G161200_v2.0.a1 Prupe.3G161200_v2.0.a1 Prupe.3G161200_v2.0.a1
pyrus_communis	pycom09g17760 pycom17g26040
rosa_chinensis	RchiOBHm_Chr3g0493141
rosa_laevigata	RLG00000022726
rosa_multiflora	Rmu_sc0008162.1_g000002 Rmu_sc0013424.1_g000015
rosa_roxburghii	Rroxscaffold_6G00391780
rosa_rugosa	Rorug03G0259400
rosa_samantha	Rh3AG308300 Rh3BG344500 Rh3CG341600 Rh3DG343800
rosa_wichuraiana	Rw0G002840 Rw0G018330 Rw3G027120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	235, 1130
AcoI	YGGCCR	2 cut(s)	981, 1152
AcsI	RAATTY	2 cut(s)	352, 1146
AfaI	GTAC	2 cut(s)	683, 1565
AfiI	CCNNNNNNNGG	1 cut(s)	82
AflII	CTTAAG	2 cut(s)	598, 965
AflIII	ACRYGT	1 cut(s)	198
AjnI	CCWGG	2 cut(s)	44, 173
Alw21I	GWGCWC	1 cut(s)	198
Alw26I	GTCTC	3 cut(s)	281, 578, 597
AlwI	GGATC	2 cut(s)	235, 1130
AoxI	GGCC	5 cut(s)	6, 154, 981, 1152, 1491
ApeKI	GCWGC	5 cut(s)	429, 762, 914, 1199, 1310
ApoI	RAATTY	2 cut(s)	352, 1146
AspS9I	GGNCC	1 cut(s)	1519
AvaII	GGWCC	1 cut(s)	1519
BalI	TGGCCA	2 cut(s)	983, 1154
BarI	GAAGNNNNNNTAC	2 cut(s)	903, 935
Bbv12I	GWGCWC	1 cut(s)	198
BbvI	GCAGC	5 cut(s)	416, 774, 926, 1211, 1322
BccI	CCATC	6 cut(s)	364, 425, 574, 660, 973, 1163
BciT130I	CCWGG	2 cut(s)	46, 175
BclI	TGATCA	2 cut(s)	129, 847
BcoDI	GTCTC	3 cut(s)	281, 578, 597
BfaI	CTAG	6 cut(s)	56, 62, 186, 594, 1034, 1358
BfmI	CTRYAG	2 cut(s)	430, 612
BfrI	CTTAAG	2 cut(s)	598, 965
BglII	AGATCT	2 cut(s)	226, 1583
BisI	GCNGC	5 cut(s)	430, 763, 915, 1200, 1311
BlsI	GCNGC	5 cut(s)	431, 764, 916, 1201, 1312
BmcAI	AGTACT	1 cut(s)	683
Bme1390I	CCNGG	2 cut(s)	46, 175
Bme18I	GGWCC	1 cut(s)	1519
BmgT120I	GGNCC	1 cut(s)	1519
BmiI	GGNNCC	1 cut(s)	207
BmrFI	CCNGG	2 cut(s)	46, 175
BmrI	ACTGGG	1 cut(s)	275
BmsI	GCATC	2 cut(s)	988, 1385
BmuI	ACTGGG	1 cut(s)	275
BpmI	CTGGAG	1 cut(s)	1059
BpuEI	CTTGAG	1 cut(s)	1197
BsaJI	CCNNGG	3 cut(s)	44, 173, 984
Bsc4I	CCNNNNNNNGG	1 cut(s)	82
Bse1I	ACTGG	2 cut(s)	270, 297
BseBI	CCWGG	2 cut(s)	46, 175
BseDI	CCNNGG	3 cut(s)	44, 173, 984
BseGI	GGATG	1 cut(s)	375
BseLI	CCNNNNNNNGG	1 cut(s)	82
BseMII	CTCAG	3 cut(s)	237, 494, 723
BseNI	ACTGG	2 cut(s)	270, 297
BseRI	GAGGAG	2 cut(s)	89, 450
BseXI	GCAGC	5 cut(s)	416, 774, 926, 1211, 1322
BshFI	GGCC	5 cut(s)	8, 156, 983, 1154, 1493
BsiHKAI	GWGCWC	1 cut(s)	198
BslFI	GGGAC	2 cut(s)	27, 156
BslI	CCNNNNNNNGG	1 cut(s)	82
BsmAI	GTCTC	3 cut(s)	281, 578, 597
BsmFI	GGGAC	2 cut(s)	27, 156
BsnI	GGCC	5 cut(s)	8, 156, 983, 1154, 1493
Bsp1286I	GDGCHC	1 cut(s)	198
Bsp1407I	TGTACA	1 cut(s)	1563
BspANI	GGCC	5 cut(s)	8, 156, 983, 1154, 1493
BspCNI	CTCAG	3 cut(s)	236, 493, 724
BspHI	TCATGA	2 cut(s)	844, 850
BspLI	GGNNCC	1 cut(s)	207
BspMAI	CTGCAG	2 cut(s)	434, 616
BspPI	GGATC	2 cut(s)	235, 1130
BspQI	GCTCTTC	1 cut(s)	1293
BspTI	CTTAAG	2 cut(s)	598, 965
BsrGI	TGTACA	1 cut(s)	1563
BsrI	ACTGG	2 cut(s)	270, 297
BssECI	CCNNGG	3 cut(s)	44, 173, 984
BssT1I	CCWWGG	1 cut(s)	984
Bst2UI	CCWGG	2 cut(s)	46, 175
Bst4CI	ACNGT	4 cut(s)	275, 626, 686, 1271
Bst6I	CTCTTC	3 cut(s)	26, 1293, 1359
BstAFI	CTTAAG	2 cut(s)	598, 965
BstAUI	TGTACA	1 cut(s)	1563
BstC8I	GCNNGC	2 cut(s)	1049, 1263
BstDEI	CTNAG	4 cut(s)	223, 480, 732, 933
BstF5I	GGATG	1 cut(s)	375
BstMAI	GTCTC	3 cut(s)	281, 578, 597
BstMWI	GCNNNNNNNGC	5 cut(s)	438, 570, 1079, 1319, 1340
BstNI	CCWGG	2 cut(s)	46, 175
BstNSI	RCATGY	1 cut(s)	202
BstSCI	CCNGG	2 cut(s)	44, 173
BstSFI	CTRYAG	2 cut(s)	430, 612
BstV1I	GCAGC	5 cut(s)	416, 774, 926, 1211, 1322
BstX2I	RGATCY	3 cut(s)	226, 240, 1583
BstYI	RGATCY	3 cut(s)	226, 240, 1583
BsuRI	GGCC	5 cut(s)	8, 156, 983, 1154, 1493
BtsCI	GGATG	1 cut(s)	375
BtsI	GCAGTG	3 cut(s)	513, 1068, 1232
BtsIMutI	CAGTG	5 cut(s)	513, 1068, 1101, 1232, 1276
Cac8I	GCNNGC	2 cut(s)	1049, 1263
CciI	TCATGA	2 cut(s)	844, 850
Cfr13I	GGNCC	1 cut(s)	1519
Csp6I	GTAC	2 cut(s)	682, 1564
CviAII	CATG	9 cut(s)	25, 199, 245, 512, 845, 851, 925, 1196, 1495
CviQI	GTAC	2 cut(s)	682, 1564
DdeI	CTNAG	4 cut(s)	223, 480, 732, 933
EaeI	YGGCCR	2 cut(s)	981, 1152
Eam1104I	CTCTTC	3 cut(s)	26, 1293, 1359
EarI	CTCTTC	3 cut(s)	26, 1293, 1359
Eco130I	CCWWGG	1 cut(s)	984
Eco32I	GATATC	1 cut(s)	258
Eco47I	GGWCC	1 cut(s)	1519
EcoRII	CCWGG	2 cut(s)	44, 173
EcoRV	GATATC	1 cut(s)	258
EcoT14I	CCWWGG	1 cut(s)	984
ErhI	CCWWGG	1 cut(s)	984
FaeI	CATG	9 cut(s)	28, 202, 248, 515, 848, 854, 928, 1199, 1498
FalI	AAGNNNNNCTT	2 cut(s)	1318, 1350
FaqI	GGGAC	2 cut(s)	27, 156
FatI	CATG	9 cut(s)	24, 198, 244, 511, 844, 850, 924, 1195, 1494
FbaI	TGATCA	2 cut(s)	129, 847
Fnu4HI	GCNGC	5 cut(s)	430, 763, 915, 1200, 1311
FokI	GGATG	1 cut(s)	382
Fsp4HI	GCNGC	5 cut(s)	430, 763, 915, 1200, 1311
FspBI	CTAG	6 cut(s)	56, 62, 186, 594, 1034, 1358
GluI	GCNGC	5 cut(s)	430, 763, 915, 1200, 1311
GsuI	CTGGAG	1 cut(s)	1059
HaeIII	GGCC	5 cut(s)	8, 156, 983, 1154, 1493
Hin1II	CATG	9 cut(s)	28, 202, 248, 515, 848, 854, 928, 1199, 1498
HincII	GTYRAC	1 cut(s)	1099
HindII	GTYRAC	1 cut(s)	1099
HindIII	AAGCTT	1 cut(s)	1332
HinfI	GANTC	6 cut(s)	299, 491, 769, 813, 869, 1226
Hpy166II	GTNNAC	2 cut(s)	559, 1099
Hpy188I	TCNGA	5 cut(s)	226, 405, 483, 733, 1354
Hpy188III	TCNNGA	9 cut(s)	186, 695, 710, 836, 845, 851, 1034, 1076, 1164
Hpy8I	GTNNAC	2 cut(s)	559, 1099
HpyAV	CCTTC	7 cut(s)	423, 521, 701, 734, 738, 803, 1312
HpyCH4III	ACNGT	4 cut(s)	275, 626, 686, 1271
HpyCH4V	TGCA	9 cut(s)	20, 71, 345, 432, 511, 614, 762, 1199, 1376
HpyF10VI	GCNNNNNNNGC	5 cut(s)	438, 570, 1079, 1319, 1340
HpyF3I	CTNAG	4 cut(s)	223, 480, 732, 933
Hsp92II	CATG	9 cut(s)	28, 202, 248, 515, 848, 854, 928, 1199, 1498
Ksp22I	TGATCA	2 cut(s)	129, 847
LguI	GCTCTTC	1 cut(s)	1293
LmnI	GCTCC	2 cut(s)	941, 1078
Lsp1109I	GCAGC	5 cut(s)	416, 774, 926, 1211, 1322
LweI	GCATC	2 cut(s)	988, 1385
MaeI	CTAG	6 cut(s)	56, 62, 186, 594, 1034, 1358
MaeIII	GTNAC	6 cut(s)	122, 269, 392, 928, 1066, 1188
MflI	RGATCY	3 cut(s)	226, 240, 1583
MhlI	GDGCHC	1 cut(s)	198
MlsI	TGGCCA	2 cut(s)	983, 1154
MluCI	AATT	5 cut(s)	340, 352, 887, 1146, 1575
MluNI	TGGCCA	2 cut(s)	983, 1154
MlyI	GAGTC	1 cut(s)	807
MmeI	TCCRAC	1 cut(s)	183
MnlI	CCTC	7 cut(s)	27, 86, 110, 167, 471, 953, 1221
Mox20I	TGGCCA	2 cut(s)	983, 1154
MscI	TGGCCA	2 cut(s)	983, 1154
MseI	TTAA	7 cut(s)	92, 599, 827, 885, 966, 1305, 1337
MslI	CAYNNNNRTG	3 cut(s)	249, 849, 1272
Msp20I	TGGCCA	2 cut(s)	983, 1154
MspCI	CTTAAG	2 cut(s)	598, 965
MspR9I	CCNGG	2 cut(s)	46, 175
MvaI	CCWGG	2 cut(s)	46, 175
MwoI	GCNNNNNNNGC	5 cut(s)	438, 570, 1079, 1319, 1340
NlaIII	CATG	9 cut(s)	28, 202, 248, 515, 848, 854, 928, 1199, 1498
NlaIV	GGNNCC	1 cut(s)	207
NmuCI	GTSAC	3 cut(s)	392, 1066, 1188
NspI	RCATGY	1 cut(s)	202
PagI	TCATGA	2 cut(s)	844, 850
PciI	ACATGT	1 cut(s)	198
PciSI	GCTCTTC	1 cut(s)	1293
PfeI	GAWTC	5 cut(s)	299, 491, 769, 869, 1226
PkrI	GCNGC	5 cut(s)	431, 764, 916, 1201, 1312
PleI	GAGTC	1 cut(s)	807
PpsI	GAGTC	1 cut(s)	807
PscI	ACATGT	1 cut(s)	198
Psp6I	CCWGG	2 cut(s)	44, 173
PspGI	CCWGG	2 cut(s)	44, 173
PspN4I	GGNNCC	1 cut(s)	207
PspPI	GGNCC	1 cut(s)	1519
PstI	CTGCAG	2 cut(s)	434, 616
PsuI	RGATCY	3 cut(s)	226, 240, 1583
RsaI	GTAC	2 cut(s)	683, 1565
RsaNI	GTAC	2 cut(s)	682, 1564
RseI	CAYNNNNRTG	3 cut(s)	249, 849, 1272
SapI	GCTCTTC	1 cut(s)	1293
SaqAI	TTAA	7 cut(s)	92, 599, 827, 885, 966, 1305, 1337
SatI	GCNGC	5 cut(s)	430, 763, 915, 1200, 1311
Sau96I	GGNCC	1 cut(s)	1519
ScaI	AGTACT	1 cut(s)	683
SchI	GAGTC	1 cut(s)	807
ScrFI	CCNGG	2 cut(s)	46, 175
SduI	GDGCHC	1 cut(s)	198
SfaNI	GCATC	2 cut(s)	988, 1385
SfcI	CTRYAG	2 cut(s)	430, 612
SinI	GGWCC	1 cut(s)	1519
SmiMI	CAYNNNNRTG	3 cut(s)	249, 849, 1272
SmlI	CTYRAG	3 cut(s)	598, 965, 1212
SmoI	CTYRAG	3 cut(s)	598, 965, 1212
Sse9I	AATT	5 cut(s)	340, 352, 887, 1146, 1575
SspMI	CTAG	6 cut(s)	56, 62, 186, 594, 1034, 1358
StyD4I	CCNGG	2 cut(s)	44, 173
StyI	CCWWGG	1 cut(s)	984
TaaI	ACNGT	4 cut(s)	275, 626, 686, 1271
TaqI	TCGA	3 cut(s)	78, 628, 1278
TasI	AATT	5 cut(s)	340, 352, 887, 1146, 1575
TatI	WGTACW	2 cut(s)	681, 1563
TfiI	GAWTC	5 cut(s)	299, 491, 769, 869, 1226
Tru1I	TTAA	7 cut(s)	92, 599, 827, 885, 966, 1305, 1337
Tru9I	TTAA	7 cut(s)	92, 599, 827, 885, 966, 1305, 1337
TscAI	CASTG	5 cut(s)	513, 1075, 1108, 1239, 1276
TseFI	GTSAC	3 cut(s)	392, 1066, 1188
TseI	GCWGC	5 cut(s)	429, 762, 914, 1199, 1310
Tsp45I	GTSAC	3 cut(s)	392, 1066, 1188
TspDTI	ATGAA	6 cut(s)	372, 456, 540, 648, 867, 993
TspRI	CASTG	5 cut(s)	513, 1075, 1108, 1239, 1276
Vha464I	CTTAAG	2 cut(s)	598, 965
VpaK11BI	GGWCC	1 cut(s)	1519
XapI	RAATTY	2 cut(s)	352, 1146
XbaI	TCTAGA	2 cut(s)	185, 1033
XceI	RCATGY	1 cut(s)	202
XcmI	CCANNNNNNNNNTGG	2 cut(s)	171, 566
XspI	CTAG	6 cut(s)	56, 62, 186, 594, 1034, 1358
ZrmI	AGTACT	1 cut(s)	683

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.