Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0007066

Physical Location & Seq

Genomic Coordinates Forward (+)

21082514 .. 21083685

Gene Structure 1172 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g28751.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGATGAAGGATGGAGAACCTGCAACAACCATTGAACAGCTCAAAGCGGCGTTGAAGACTGAAAGTAAAGCTTTAAGTGCTTTATATTCAGAACTAGAGGAAGAGAGAAGTGCATCCGCCGTAGCTGCCAACCAGACTATGGCTATGATAACAAGGCTGCAAGAAGAGAAGGCAGCAATGCAGATGGAGGCATTGCAATATCAGAGAATGATGGAAGAACAATCTGAGTATGATCAAGAAGCCTTGCAACTTTTAAATGAGTTGATGAACAAATTGGAGAGGGAAAAGCAAGAGCTAGAGAAAGAACTGGAAATATATCAGAAGAAAGTCCTGGATTATGAGGCAAAAGAGAAGATAAGGGTCATGAGCAGAATCAAATATGGGAGAATCAGAAGTAGAAATTCTTCTGCTTCCTACAGCCAGTCTTGGAATAGTGACGCGCTATCCATTGATCTCAATTGTGAAGCAAGGGATGATGATAATTCTTTCCCTCAAGAATGCTTCCAAGAAGAGAGGTTTACAATTCTGGATCAGCTTAAAGCATTGGAAGATAGGCTACTAGTGTTGAGTGAAAATGAGAACTACTCTCAGGATCATAAATTAGTTGAGAATGACTCGAACTTCAGTACCAAAAACATTGAAGAAAATCATAATTTCAGCAGTCCAGAAGAACAACAAATATCAGATGAGAAAATAACATTGGCTTCCATGGCAAAGAGGCTTCTTCCACTTTTGGGTGTAGGAGCTGAGGATAATGAAACTGAACAAGGTTTAACATGTGAAAAACAAGTCAGAACTGAATCTATTGCAATGCATAACTCGGTGACAAATTCTGAATTGCATGATACTAGAATAGCCATTGAGGAGGAAGTGGATCATGTTTATGAGAGGCTACAAGCTCTTGAAGGAGACAGGGAGTGTCTCAAGCACTGTATGAGCTCCATAAACCAGGGGGACAAGGGGATGGATCTTCTTCACGAGAGCTTGCAACATCTCCGGGATTTAAGGGATGTTGAACTCTGCATAAGAAACATAAATGATCATGTGGATGAAGCTGCAAACAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0008092 GO:0017022

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Zein-binding

Protein Analysis

356

Amino Acids

40.93

Weight (kDa)

4.65

Isoelectric Point (pI)

63.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zein-binding	PF04576	13 - 103	9.4e-32	Zein-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007066)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16720
fragaria_vesca	FvH4_1g28750 FvH4_1g28751
malus_domestica	MD09G1263700.v1.1 MD17G1258500.v1.1 MD17G1259000.v1.1
prunus_persica	Prupe.3G161200_v2.0.a1 Prupe.3G161200_v2.0.a1 Prupe.3G161200_v2.0.a1 Prupe.3G161200_v2.0.a1
pyrus_communis	pycom09g17760 pycom17g26040
rosa_chinensis	RchiOBHm_Chr3g0493141
rosa_laevigata	RLG00000022726
rosa_multiflora	Rmu_sc0008162.1_g000002 Rmu_sc0013424.1_g000015
rosa_roxburghii	Rroxscaffold_6G00391780
rosa_rugosa	Rorug03G0259400
rosa_samantha	Rh3AG308300 Rh3BG344500 Rh3CG341600 Rh3DG343800
rosa_wichuraiana	Rw0G002840 Rw0G018330 Rw3G027120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	28
AccB7I	CCANNNNNTGG	1 cut(s)	139
AccII	CGCG	1 cut(s)	440
AciI	CCGC	2 cut(s)	47, 117
AclWI	GGATC	4 cut(s)	537, 600, 882, 975
AcsI	RAATTY	2 cut(s)	400, 829
AcuI	CTGAAG	1 cut(s)	607
AfaI	GTAC	1 cut(s)	628
AfiI	CCNNNNNNNGG	2 cut(s)	139, 734
AflIII	ACRYGT	1 cut(s)	776
AgsI	TTSAA	5 cut(s)	35, 55, 641, 905, 1016
AhlI	ACTAGT	1 cut(s)	559
AjnI	CCWGG	2 cut(s)	330, 948
AjuI	GAANNNNNNNTTGG	2 cut(s)	683, 715
Alw21I	GWGCWC	1 cut(s)	941
Alw26I	GTCTC	2 cut(s)	903, 926
AlwI	GGATC	4 cut(s)	537, 600, 882, 975
ApeKI	GCWGC	4 cut(s)	125, 157, 173, 1055
ApoI	RAATTY	2 cut(s)	400, 829
Asp700I	GAANNNNTTC	1 cut(s)	403
AspLEI	GCGC	1 cut(s)	442
AsuC2I	CCSGG	1 cut(s)	998
AsuHPI	GGTGA	1 cut(s)	835
BaeI	ACNNNNGTAYC	2 cut(s)	610, 643
BanII	GRGCYC	1 cut(s)	941
BarI	GAAGNNNNNNTAC	4 cut(s)	388, 420, 540, 572
BauI	CACGAG	1 cut(s)	977
BbsI	GAAGAC	1 cut(s)	62
Bbv12I	GWGCWC	1 cut(s)	941
BbvCI	CCTCAGC	1 cut(s)	747
BbvI	GCAGC	4 cut(s)	112, 144, 185, 1042
BccI	CCATC	4 cut(s)	5, 178, 205, 958
BceAI	ACGGC	1 cut(s)	104
BciT130I	CCWGG	2 cut(s)	332, 950
BclI	TGATCA	2 cut(s)	232, 1039
BcnI	CCSGG	1 cut(s)	998
BcoDI	GTCTC	2 cut(s)	903, 926
BcuI	ACTAGT	1 cut(s)	559
BfaI	CTAG	4 cut(s)	95, 296, 560, 849
BfmI	CTRYAG	1 cut(s)	415
BfuAI	ACCTGC	1 cut(s)	28
BisI	GCNGC	5 cut(s)	48, 126, 158, 174, 1056
BlsI	GCNGC	5 cut(s)	49, 127, 159, 175, 1057
Bme1390I	CCNGG	3 cut(s)	332, 950, 998
BmrFI	CCNGG	3 cut(s)	332, 950, 998
BmsI	GCATC	1 cut(s)	122
BpiI	GAAGAC	1 cut(s)	62
BplI	GAGNNNNNCTC	4 cut(s)	569, 601, 599, 631
Bpu10I	CCTNAGC	1 cut(s)	747
BpuEI	CTTGAG	2 cut(s)	477, 908
BpuMI	CCSGG	1 cut(s)	998
BsaJI	CCNNGG	2 cut(s)	708, 949
Bsc4I	CCNNNNNNNGG	2 cut(s)	139, 734
Bse1I	ACTGG	2 cut(s)	312, 421
Bse3DI	GCAATG	3 cut(s)	183, 191, 816
BseBI	CCWGG	2 cut(s)	332, 950
BseDI	CCNNGG	2 cut(s)	708, 949
BseGI	GGATG	6 cut(s)	16, 113, 478, 969, 1015, 1054
BseLI	CCNNNNNNNGG	2 cut(s)	139, 734
BseMI	GCAATG	3 cut(s)	183, 191, 816
BseMII	CTCAG	3 cut(s)	216, 602, 738
BseNI	ACTGG	2 cut(s)	312, 421
BseRI	GAGGAG	1 cut(s)	878
BseXI	GCAGC	4 cut(s)	112, 144, 185, 1042
Bsh1236I	CGCG	1 cut(s)	440
BsiHKAI	GWGCWC	1 cut(s)	941
BsiSI	CCGG	1 cut(s)	997
BslFI	GGGAC	1 cut(s)	968
BslI	CCNNNNNNNGG	2 cut(s)	139, 734
BsmAI	GTCTC	2 cut(s)	903, 926
BsmFI	GGGAC	1 cut(s)	968
BsmI	GAATGC	1 cut(s)	503
Bsp1286I	GDGCHC	1 cut(s)	941
Bsp143I	GATC	7 cut(s)	232, 451, 529, 592, 874, 967, 1039
Bsp19I	CCATGG	1 cut(s)	708
BspACI	CCGC	2 cut(s)	47, 117
BspCNI	CTCAG	3 cut(s)	217, 601, 739
BspFNI	CGCG	1 cut(s)	440
BspHI	TCATGA	1 cut(s)	363
BspMI	ACCTGC	1 cut(s)	28
BspPI	GGATC	4 cut(s)	537, 600, 882, 975
BsrDI	GCAATG	3 cut(s)	183, 191, 816
BsrI	ACTGG	2 cut(s)	312, 421
BssECI	CCNNGG	2 cut(s)	708, 949
BssMI	GATC	7 cut(s)	232, 451, 529, 592, 874, 967, 1039
BssSI	CACGAG	1 cut(s)	977
BssT1I	CCWWGG	1 cut(s)	708
Bst2BI	CACGAG	1 cut(s)	977
Bst2UI	CCWGG	2 cut(s)	332, 950
Bst4CI	ACNGT	1 cut(s)	932
Bst6I	CTCTTC	3 cut(s)	96, 159, 504
BstC8I	GCNNGC	1 cut(s)	986
BstDEI	CTNAG	3 cut(s)	225, 588, 747
BstDSI	CCRYGG	1 cut(s)	708
BstF5I	GGATG	6 cut(s)	16, 113, 478, 969, 1015, 1054
BstFNI	CGCG	1 cut(s)	440
BstHHI	GCGC	1 cut(s)	442
BstKTI	GATC	7 cut(s)	235, 454, 532, 595, 877, 970, 1042
BstMAI	GTCTC	2 cut(s)	903, 926
BstMBI	GATC	7 cut(s)	232, 451, 529, 592, 874, 967, 1039
BstMWI	GCNNNNNNNGC	3 cut(s)	77, 125, 710
BstNI	CCWGG	2 cut(s)	332, 950
BstNSI	RCATGY	1 cut(s)	780
BstSCI	CCNGG	3 cut(s)	330, 948, 996
BstSFI	CTRYAG	1 cut(s)	415
BstUI	CGCG	1 cut(s)	440
BstV1I	GCAGC	4 cut(s)	112, 144, 185, 1042
BstV2I	GAAGAC	1 cut(s)	62
BstX2I	RGATCY	1 cut(s)	967
BstYI	RGATCY	1 cut(s)	967
BtgI	CCRYGG	1 cut(s)	708
BtsCI	GGATG	6 cut(s)	16, 113, 478, 969, 1015, 1054
BtsIMutI	CAGTG	1 cut(s)	928
BveI	ACCTGC	1 cut(s)	28
Cac8I	GCNNGC	1 cut(s)	986
CciI	TCATGA	1 cut(s)	363
CfoI	GCGC	1 cut(s)	442
CseI	GACGC	1 cut(s)	446
Csp6I	GTAC	1 cut(s)	627
CviAII	CATG	6 cut(s)	364, 709, 777, 842, 878, 1043
CviQI	GTAC	1 cut(s)	627
DdeI	CTNAG	3 cut(s)	225, 588, 747
DpnI	GATC	7 cut(s)	234, 453, 531, 594, 876, 969, 1041
DpnII	GATC	7 cut(s)	232, 451, 529, 592, 874, 967, 1039
DraI	TTTAAA	1 cut(s)	255
Eam1104I	CTCTTC	3 cut(s)	96, 159, 504
EarI	CTCTTC	3 cut(s)	96, 159, 504
EciI	GGCGGA	1 cut(s)	106
Ecl136II	GAGCTC	1 cut(s)	939
Eco130I	CCWWGG	1 cut(s)	708
Eco24I	GRGCYC	1 cut(s)	941
Eco53kI	GAGCTC	1 cut(s)	939
Eco57I	CTGAAG	1 cut(s)	607
EcoICRI	GAGCTC	1 cut(s)	939
EcoRII	CCWGG	2 cut(s)	330, 948
EcoT14I	CCWWGG	1 cut(s)	708
EcoT22I	ATGCAT	1 cut(s)	816
EcoT38I	GRGCYC	1 cut(s)	941
ErhI	CCWWGG	1 cut(s)	708
FaeI	CATG	6 cut(s)	367, 712, 780, 845, 881, 1046
FalI	AAGNNNNNCTT	2 cut(s)	55, 87
FaqI	GGGAC	1 cut(s)	968
FatI	CATG	6 cut(s)	363, 708, 776, 841, 877, 1042
FbaI	TGATCA	2 cut(s)	232, 1039
Fnu4HI	GCNGC	5 cut(s)	48, 126, 158, 174, 1056
FokI	GGATG	6 cut(s)	23, 100, 485, 976, 1022, 1061
FriOI	GRGCYC	1 cut(s)	941
Fsp4HI	GCNGC	5 cut(s)	48, 126, 158, 174, 1056
FspBI	CTAG	4 cut(s)	95, 296, 560, 849
GlaI	GCGC	1 cut(s)	441
GluI	GCNGC	5 cut(s)	48, 126, 158, 174, 1056
HapII	CCGG	1 cut(s)	997
HgaI	GACGC	1 cut(s)	446
HhaI	GCGC	1 cut(s)	442
Hin1II	CATG	6 cut(s)	367, 712, 780, 845, 881, 1046
Hin6I	GCGC	1 cut(s)	440
HinP1I	GCGC	1 cut(s)	440
HindIII	AAGCTT	1 cut(s)	69
HinfI	GANTC	4 cut(s)	372, 387, 614, 800
HpaII	CCGG	1 cut(s)	997
HphI	GGTGA	1 cut(s)	835
Hpy166II	GTNNAC	1 cut(s)	519
Hpy188I	TCNGA	8 cut(s)	91, 204, 226, 321, 392, 685, 794, 835
Hpy188III	TCNNGA	8 cut(s)	236, 364, 494, 527, 590, 665, 902, 977
Hpy8I	GTNNAC	1 cut(s)	519
HpyAV	CCTTC	2 cut(s)	163, 899
HpyCH4III	ACNGT	1 cut(s)	932
HpyF10VI	GCNNNNNNNGC	3 cut(s)	77, 125, 710
HpyF3I	CTNAG	3 cut(s)	225, 588, 747
Hsp92II	CATG	6 cut(s)	367, 712, 780, 845, 881, 1046
HspAI	GCGC	1 cut(s)	440
Ksp22I	TGATCA	2 cut(s)	232, 1039
Kzo9I	GATC	7 cut(s)	232, 451, 529, 592, 874, 967, 1039
LmnI	GCTCC	2 cut(s)	743, 944
Lsp1109I	GCAGC	4 cut(s)	112, 144, 185, 1042
LweI	GCATC	1 cut(s)	122
MaeI	CTAG	4 cut(s)	95, 296, 560, 849
MaeIII	GTNAC	2 cut(s)	434, 823
MalI	GATC	7 cut(s)	234, 453, 531, 594, 876, 969, 1041
MboI	GATC	7 cut(s)	232, 451, 529, 592, 874, 967, 1039
MfeI	CAATTG	2 cut(s)	457, 1063
MflI	RGATCY	1 cut(s)	967
MhlI	GDGCHC	1 cut(s)	941
MlyI	GAGTC	1 cut(s)	608
Mph1103I	ATGCAT	1 cut(s)	816
MroXI	GAANNNNTTC	1 cut(s)	403
MseI	TTAA	5 cut(s)	74, 254, 537, 773, 1004
MslI	CAYNNNNRTG	2 cut(s)	882, 1047
MspI	CCGG	1 cut(s)	997
MspR9I	CCNGG	3 cut(s)	332, 950, 998
MunI	CAATTG	2 cut(s)	457, 1063
Mva1269I	GAATGC	1 cut(s)	503
MvaI	CCWGG	2 cut(s)	332, 950
MvnI	CGCG	1 cut(s)	440
MwoI	GCNNNNNNNGC	3 cut(s)	77, 125, 710
NciI	CCSGG	1 cut(s)	998
NcoI	CCATGG	1 cut(s)	708
NdeII	GATC	7 cut(s)	232, 451, 529, 592, 874, 967, 1039
NlaIII	CATG	6 cut(s)	367, 712, 780, 845, 881, 1046
NmuCI	GTSAC	2 cut(s)	434, 823
NsiI	ATGCAT	1 cut(s)	816
NspI	RCATGY	1 cut(s)	780
PagI	TCATGA	1 cut(s)	363
PciI	ACATGT	1 cut(s)	776
PctI	GAATGC	1 cut(s)	503
PdmI	GAANNNNTTC	1 cut(s)	403
PfeI	GAWTC	3 cut(s)	372, 387, 800
PflMI	CCANNNNNTGG	1 cut(s)	139
PfoI	TCCNGGA	2 cut(s)	330, 996
PkrI	GCNGC	5 cut(s)	49, 127, 159, 175, 1057
PleI	GAGTC	1 cut(s)	608
PpsI	GAGTC	1 cut(s)	608
PscI	ACATGT	1 cut(s)	776
Psp124BI	GAGCTC	1 cut(s)	941
Psp6I	CCWGG	2 cut(s)	330, 948
PspGI	CCWGG	2 cut(s)	330, 948
PsuI	RGATCY	1 cut(s)	967
RsaI	GTAC	1 cut(s)	628
RsaNI	GTAC	1 cut(s)	627
RseI	CAYNNNNRTG	2 cut(s)	882, 1047
SacI	GAGCTC	1 cut(s)	941
SaqAI	TTAA	5 cut(s)	74, 254, 537, 773, 1004
SatI	GCNGC	5 cut(s)	48, 126, 158, 174, 1056
Sau3AI	GATC	7 cut(s)	232, 451, 529, 592, 874, 967, 1039
SchI	GAGTC	1 cut(s)	608
ScrFI	CCNGG	3 cut(s)	332, 950, 998
SduI	GDGCHC	1 cut(s)	941
SfaNI	GCATC	1 cut(s)	122
SfcI	CTRYAG	1 cut(s)	415
SmiMI	CAYNNNNRTG	2 cut(s)	882, 1047
SmlI	CTYRAG	2 cut(s)	492, 923
SmoI	CTYRAG	2 cut(s)	492, 923
SpeI	ACTAGT	1 cut(s)	559
SsiI	CCGC	2 cut(s)	47, 117
SspMI	CTAG	4 cut(s)	95, 296, 560, 849
SstI	GAGCTC	1 cut(s)	941
StyD4I	CCNGG	3 cut(s)	330, 948, 996
StyI	CCWWGG	1 cut(s)	708
TaaI	ACNGT	1 cut(s)	932
TaqI	TCGA	1 cut(s)	617
TauI	GCSGC	1 cut(s)	50
TfiI	GAWTC	3 cut(s)	372, 387, 800
Tru1I	TTAA	5 cut(s)	74, 254, 537, 773, 1004
Tru9I	TTAA	5 cut(s)	74, 254, 537, 773, 1004
TscAI	CASTG	1 cut(s)	935
TseFI	GTSAC	2 cut(s)	434, 823
TseI	GCWGC	4 cut(s)	125, 157, 173, 1055
Tsp45I	GTSAC	2 cut(s)	434, 823
TspDTI	ATGAA	4 cut(s)	20, 281, 771, 1065
TspRI	CASTG	1 cut(s)	935
Van91I	CCANNNNNTGG	1 cut(s)	139
XapI	RAATTY	2 cut(s)	400, 829
XceI	RCATGY	1 cut(s)	780
XcmI	CCANNNNNNNNNTGG	1 cut(s)	136
XmnI	GAANNNNTTC	1 cut(s)	403
XspI	CTAG	4 cut(s)	95, 296, 560, 849
Zsp2I	ATGCAT	1 cut(s)	816

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.