Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0005519

Physical Location & Seq

Genomic Coordinates Reverse (-)

22350405 .. 22356952

Gene Structure 6548 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g29370.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGTGGCCTCTGGCCTGCTGTTTGACTCCATTTGAAACGAACGGCCCGTTTACCACTTTGCAGGCCTCCAAAAACAATCCACCAATCAAACCAATCCAACGAAGTACTAGATTCTCAGTCTCTCTTGTTTGTTTAATCTCAATTCTTCGAGGTACGGCTCTCAATCTCTCTCTCTCAATTTCTTCTTCCGATTTCAATTTCTTCTTGTTGTTGAATTCAGACATGTATCACGCAAAGAAATTCTCGACGGCGAGCTTAGTCCCGCATAAACCTCAGAGTTCTGAACAGCTTGTTGCAAGTGATTCATCAGTGAAAAACCCAACCCCCTCTGCTTCTAATTCTGCTTCTGCTTCTGCCGGTAATGGAAAACAACGACTGCGCTGGACCTCCGATCTCCATGACCGCTTCGTCGATGCCATCACACAACTCGGTGGACCAGATAGGGCCACACCTAAAGGTGTCTTGAGAGTGATGGGTGTTCCTGGACTAACTATTTATCATGTGAAGAGCCATTTACAGAAGTATCGTCTTGCAAAGTACCTGCCAGAGTCTCCAGCTGATGGTTCTAAAGATGAGAAGAAAGGTTCTGGAGACAGCCTCTCTTGCTCAGATTCTTCTCCTGGAGTGCAAATTAATGAGGCATTGAGGATGCAGATGGAAGTTCAGAAGCGACTTCATGAACAACTTGAGGTTCAAAGACAACTACAAATGAGAATAGAGGCTCAGGGAAAGTACTTGCAGAAGATCATTGAGGAGCAGCAGAAATTGGGTGGCGTTCTCAAAGGATCTGATGCATTACCATCAGCAGAGGATAAGCAAAAGTCATCCCAGTTGGAGACACACGGTGATGCTTCTACCAAGTTGCCATCTCCCCGAAAGAAACACCGGATGGATGATGGGTTGTTGAGTGATTGTACCACATCCCATCTGCCTCCAAACACTGACCAAAAGGATGAATTTACTGGTCAGTGGGATCAAGACGTGTACCCTAGTGTTGGTGGATTTGGTTTCAACTTGCGAACAGAGTTGAAAGAGGCAGAAGGTGGTGTTGCTAAACAGAAAGGGCCTCTGGAGTTACGTCCGTTGTGTGACTCTGAACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

368

Amino Acids

40.29

Weight (kDa)

8.61

Isoelectric Point (pI)

50.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	102 - 153	1.4e-07	Myb-like DNA-binding domain
Myb_CC_LHEQLE	PF14379	186 - 232	2.1e-24	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005519)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29370 FvH4_1g29370 FvH4_1g29370 FvH4_1g29370
malus_domestica	MD12G1111000.v1.1 MD14G1091900.v1.1
prunus_persica	Prupe.7G023300_v2.0.a1 Prupe.7G023300_v2.0.a1 Prupe.7G023300_v2.0.a1 Prupe.7G023300_v2.0.a1 Prupe.7G023300_v2.0.a1 Prupe.7G023300_v2.0.a1 Prupe.7G023300_v2.0.a1 Prupe.7G023300_v2.0.a1
pyrus_communis	pycom12g09310 pycom14g08990
rosa_chinensis	RchiOBHm_Chr3g0495021
rosa_laevigata	RLG00000022655
rosa_multiflora	Rmu_ssc0000058.1_g000002 Rmu_ssc0000058.1_g000009
rosa_roxburghii	Rroxscaffold_6G00390840
rosa_rugosa	Rorug03G0269100 Rorug03G0269200
rosa_samantha	Rh3AG318300 Rh3BG353300 Rh3BG353400 Rh3CG350200 Rh3DG352700
rosa_wichuraiana	Rw3G027750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	407
Acc36I	ACCTGC	1 cut(s)	549
AccB7I	CCANNNNNTGG	1 cut(s)	560
AciI	CCGC	2 cut(s)	263, 403
AclWI	GGATC	2 cut(s)	793, 981
AcsI	RAATTY	3 cut(s)	214, 239, 956
AdeI	CACNNNGTG	1 cut(s)	845
AfaI	GTAC	6 cut(s)	106, 154, 539, 734, 916, 986
AfiI	CCNNNNNNNGG	2 cut(s)	560, 995
AflIII	ACRYGT	2 cut(s)	222, 981
AgsI	TTSAA	6 cut(s)	35, 196, 214, 695, 1012, 1030
AjiI	CACGTC	1 cut(s)	982
AjnI	CCWGG	2 cut(s)	481, 619
AluBI	AGCT	3 cut(s)	255, 289, 557
AluI	AGCT	3 cut(s)	255, 289, 557
Alw26I	GTCTC	4 cut(s)	124, 555, 585, 830
AlwI	GGATC	2 cut(s)	793, 981
AoxI	GGCC	6 cut(s)	5, 12, 43, 63, 444, 1064
ApeKI	GCWGC	1 cut(s)	757
ApoI	RAATTY	3 cut(s)	214, 239, 956
AseI	ATTAAT	1 cut(s)	633
AspLEI	GCGC	1 cut(s)	381
AspS9I	GGNCC	5 cut(s)	44, 384, 434, 444, 1064
AsuHPI	GGTGA	1 cut(s)	857
AvaII	GGWCC	2 cut(s)	384, 434
BaeI	ACNNNNGTAYC	2 cut(s)	506, 539
BbvI	GCAGC	1 cut(s)	769
BccI	CCATC	9 cut(s)	425, 466, 554, 649, 808, 874, 883, 890, 933
BceAI	ACGGC	3 cut(s)	58, 171, 264
BciT130I	CCWGG	2 cut(s)	483, 621
BcoDI	GTCTC	4 cut(s)	124, 555, 585, 830
BfaI	CTAG	2 cut(s)	108, 990
BfuAI	ACCTGC	1 cut(s)	549
BisI	GCNGC	1 cut(s)	758
BlsI	GCNGC	1 cut(s)	759
BmcAI	AGTACT	2 cut(s)	106, 734
Bme1390I	CCNGG	2 cut(s)	483, 621
Bme18I	GGWCC	2 cut(s)	384, 434
BmgBI	CACGTC	1 cut(s)	982
BmgT120I	GGNCC	5 cut(s)	44, 384, 434, 444, 1064
BmrFI	CCNGG	2 cut(s)	483, 621
BmrI	ACTGGG	1 cut(s)	823
BmsI	GCATC	4 cut(s)	403, 639, 781, 838
BmuI	ACTGGG	1 cut(s)	823
BplI	GAGNNNNNCTC	2 cut(s)	582, 614
BpmI	CTGGAG	4 cut(s)	537, 609, 642, 1091
Bpu10I	CCTNAGC	1 cut(s)	723
BpuEI	CTTGAG	2 cut(s)	484, 707
BsaWI	WCCGGW	1 cut(s)	885
Bsc4I	CCNNNNNNNGG	2 cut(s)	560, 995
Bse118I	RCCGGY	1 cut(s)	356
Bse1I	ACTGG	2 cut(s)	829, 967
BseBI	CCWGG	2 cut(s)	483, 621
BseGI	GGATG	6 cut(s)	654, 824, 894, 898, 920, 958
BseLI	CCNNNNNNNGG	2 cut(s)	560, 995
BseMII	CTCAG	4 cut(s)	129, 287, 621, 737
BseNI	ACTGG	2 cut(s)	829, 967
BseRI	GAGGAG	1 cut(s)	767
BseXI	GCAGC	1 cut(s)	769
BshFI	GGCC	6 cut(s)	7, 14, 45, 65, 446, 1066
BsiSI	CCGG	2 cut(s)	357, 886
BslFI	GGGAC	1 cut(s)	245
BslI	CCNNNNNNNGG	2 cut(s)	560, 995
BsmAI	GTCTC	4 cut(s)	124, 555, 585, 830
BsmFI	GGGAC	1 cut(s)	245
BsnI	GGCC	6 cut(s)	7, 14, 45, 65, 446, 1066
Bsp143I	GATC	4 cut(s)	391, 744, 785, 973
BspACI	CCGC	2 cut(s)	263, 403
BspANI	GGCC	6 cut(s)	7, 14, 45, 65, 446, 1066
BspCNI	CTCAG	4 cut(s)	128, 286, 620, 736
BspHI	TCATGA	1 cut(s)	676
BspMI	ACCTGC	1 cut(s)	549
BspPI	GGATC	2 cut(s)	793, 981
BspQI	GCTCTTC	1 cut(s)	500
BsrFI	RCCGGY	1 cut(s)	356
BsrI	ACTGG	2 cut(s)	829, 967
BssAI	RCCGGY	1 cut(s)	356
BssMI	GATC	4 cut(s)	391, 744, 785, 973
Bst2UI	CCWGG	2 cut(s)	483, 621
Bst4CI	ACNGT	1 cut(s)	845
Bst6I	CTCTTC	1 cut(s)	500
BstC8I	GCNNGC	3 cut(s)	16, 63, 253
BstDEI	CTNAG	5 cut(s)	115, 256, 273, 607, 723
BstF5I	GGATG	6 cut(s)	654, 824, 894, 898, 920, 958
BstHHI	GCGC	1 cut(s)	381
BstKTI	GATC	4 cut(s)	394, 747, 788, 976
BstMAI	GTCTC	4 cut(s)	124, 555, 585, 830
BstMBI	GATC	4 cut(s)	391, 744, 785, 973
BstMWI	GCNNNNNNNGC	1 cut(s)	603
BstNI	CCWGG	2 cut(s)	483, 621
BstNSI	RCATGY	1 cut(s)	226
BstSCI	CCNGG	2 cut(s)	481, 619
BstV1I	GCAGC	1 cut(s)	769
BstX2I	RGATCY	1 cut(s)	785
BstYI	RGATCY	1 cut(s)	785
BsuRI	GGCC	6 cut(s)	7, 14, 45, 65, 446, 1066
BtrI	CACGTC	1 cut(s)	982
BtsCI	GGATG	6 cut(s)	654, 824, 894, 898, 920, 958
BtsIMutI	CAGTG	3 cut(s)	315, 939, 974
BveI	ACCTGC	1 cut(s)	549
Cac8I	GCNNGC	3 cut(s)	16, 63, 253
CciI	TCATGA	1 cut(s)	676
CfoI	GCGC	1 cut(s)	381
Cfr10I	RCCGGY	1 cut(s)	356
Cfr13I	GGNCC	5 cut(s)	44, 384, 434, 444, 1064
Csp6I	GTAC	6 cut(s)	105, 153, 538, 733, 915, 985
CviAII	CATG	4 cut(s)	223, 398, 500, 677
CviQI	GTAC	6 cut(s)	105, 153, 538, 733, 915, 985
DdeI	CTNAG	5 cut(s)	115, 256, 273, 607, 723
DpnI	GATC	4 cut(s)	393, 746, 787, 975
DpnII	GATC	4 cut(s)	391, 744, 785, 973
DraIII	CACNNNGTG	1 cut(s)	845
DrdI	GACNNNNNNGTC	1 cut(s)	407
DseDI	GACNNNNNNGTC	1 cut(s)	407
Eam1104I	CTCTTC	1 cut(s)	500
EarI	CTCTTC	1 cut(s)	500
Eco147I	AGGCCT	1 cut(s)	65
Eco47I	GGWCC	2 cut(s)	384, 434
EcoO109I	RGGNCCY	1 cut(s)	1064
EcoRI	GAATTC	1 cut(s)	214
EcoRII	CCWGG	2 cut(s)	481, 619
EcoT22I	ATGCAT	1 cut(s)	796
FaeI	CATG	4 cut(s)	226, 401, 503, 680
FaiI	YATR	5 cut(s)	224, 267, 399, 501, 678
FaqI	GGGAC	1 cut(s)	245
FatI	CATG	4 cut(s)	222, 397, 499, 676
FauI	CCCGC	1 cut(s)	270
Fnu4HI	GCNGC	1 cut(s)	758
FokI	GGATG	6 cut(s)	661, 811, 901, 905, 907, 965
Fsp4HI	GCNGC	1 cut(s)	758
FspBI	CTAG	2 cut(s)	108, 990
GlaI	GCGC	1 cut(s)	380
GluI	GCNGC	1 cut(s)	758
GsuI	CTGGAG	4 cut(s)	537, 609, 642, 1091
HaeIII	GGCC	6 cut(s)	7, 14, 45, 65, 446, 1066
HapII	CCGG	2 cut(s)	357, 886
HhaI	GCGC	1 cut(s)	381
Hin1II	CATG	4 cut(s)	226, 401, 503, 680
Hin6I	GCGC	1 cut(s)	379
HinP1I	GCGC	1 cut(s)	379
HinfI	GANTC	6 cut(s)	25, 111, 302, 548, 611, 1091
HpaII	CCGG	2 cut(s)	357, 886
HphI	GGTGA	1 cut(s)	857
Hpy166II	GTNNAC	3 cut(s)	51, 434, 985
Hpy188I	TCNGA	9 cut(s)	190, 220, 276, 283, 391, 610, 666, 790, 1096
Hpy188III	TCNNGA	6 cut(s)	244, 463, 588, 677, 977, 1070
Hpy8I	GTNNAC	3 cut(s)	51, 434, 985
Hpy99I	CGWCG	2 cut(s)	250, 413
HpyAV	CCTTC	1 cut(s)	1034
HpyCH4III	ACNGT	1 cut(s)	845
HpyCH4IV	ACGT	2 cut(s)	981, 1078
HpyCH4V	TGCA	7 cut(s)	61, 296, 533, 628, 652, 739, 794
HpyF10VI	GCNNNNNNNGC	1 cut(s)	603
HpyF3I	CTNAG	5 cut(s)	115, 256, 273, 607, 723
HpySE526I	ACGT	2 cut(s)	981, 1078
Hsp92II	CATG	4 cut(s)	226, 401, 503, 680
HspAI	GCGC	1 cut(s)	379
Kzo9I	GATC	4 cut(s)	391, 744, 785, 973
LguI	GCTCTTC	1 cut(s)	500
LmnI	GCTCC	1 cut(s)	754
Lsp1109I	GCAGC	1 cut(s)	769
LweI	GCATC	4 cut(s)	403, 639, 781, 838
MaeI	CTAG	2 cut(s)	108, 990
MaeII	ACGT	2 cut(s)	981, 1078
MaeIII	GTNAC	2 cut(s)	1074, 1088
MalI	GATC	4 cut(s)	393, 746, 787, 975
MboI	GATC	4 cut(s)	391, 744, 785, 973
MboII	GAAGA	8 cut(s)	137, 174, 177, 193, 517, 589, 606, 754
MflI	RGATCY	1 cut(s)	785
MluCI	AATT	9 cut(s)	141, 177, 196, 214, 239, 337, 630, 764, 956
MlyI	GAGTC	3 cut(s)	19, 557, 1085
MmeI	TCCRAC	2 cut(s)	121, 813
Mph1103I	ATGCAT	1 cut(s)	796
MseI	TTAA	2 cut(s)	134, 633
MslI	CAYNNNNRTG	1 cut(s)	846
MspA1I	CMGCKG	1 cut(s)	557
MspI	CCGG	2 cut(s)	357, 886
MspR9I	CCNGG	2 cut(s)	483, 621
MvaI	CCWGG	2 cut(s)	483, 621
MwoI	GCNNNNNNNGC	1 cut(s)	603
NdeII	GATC	4 cut(s)	391, 744, 785, 973
NlaIII	CATG	4 cut(s)	226, 401, 503, 680
NmuCI	GTSAC	1 cut(s)	1088
NsiI	ATGCAT	1 cut(s)	796
NspI	RCATGY	1 cut(s)	226
PagI	TCATGA	1 cut(s)	676
PceI	AGGCCT	1 cut(s)	65
PciI	ACATGT	1 cut(s)	222
PciSI	GCTCTTC	1 cut(s)	500
PcsI	WCGNNNNNNNCGW	1 cut(s)	44
PfeI	GAWTC	3 cut(s)	111, 302, 611
PflMI	CCANNNNNTGG	1 cut(s)	560
PfoI	TCCNGGA	2 cut(s)	481, 619
PkrI	GCNGC	1 cut(s)	759
PleI	GAGTC	3 cut(s)	19, 556, 1085
PpsI	GAGTC	3 cut(s)	19, 556, 1085
PscI	ACATGT	1 cut(s)	222
PshBI	ATTAAT	1 cut(s)	633
Psp6I	CCWGG	2 cut(s)	481, 619
PspGI	CCWGG	2 cut(s)	481, 619
PspPI	GGNCC	5 cut(s)	44, 384, 434, 444, 1064
PsuI	RGATCY	1 cut(s)	785
PvuII	CAGCTG	1 cut(s)	557
RsaI	GTAC	6 cut(s)	106, 154, 539, 734, 916, 986
RsaNI	GTAC	6 cut(s)	105, 153, 538, 733, 915, 985
RseI	CAYNNNNRTG	1 cut(s)	846
SapI	GCTCTTC	1 cut(s)	500
SaqAI	TTAA	2 cut(s)	134, 633
SatI	GCNGC	1 cut(s)	758
Sau3AI	GATC	4 cut(s)	391, 744, 785, 973
Sau96I	GGNCC	5 cut(s)	44, 384, 434, 444, 1064
ScaI	AGTACT	2 cut(s)	106, 734
SchI	GAGTC	3 cut(s)	19, 557, 1085
ScrFI	CCNGG	2 cut(s)	483, 621
SfaNI	GCATC	4 cut(s)	403, 639, 781, 838
SinI	GGWCC	2 cut(s)	384, 434
SmiMI	CAYNNNNRTG	1 cut(s)	846
SmlI	CTYRAG	2 cut(s)	463, 686
SmoI	CTYRAG	2 cut(s)	463, 686
Sse9I	AATT	9 cut(s)	141, 177, 196, 214, 239, 337, 630, 764, 956
SseBI	AGGCCT	1 cut(s)	65
SsiI	CCGC	2 cut(s)	263, 403
SspMI	CTAG	2 cut(s)	108, 990
StuI	AGGCCT	1 cut(s)	65
StyD4I	CCNGG	2 cut(s)	481, 619
TaaI	ACNGT	1 cut(s)	845
TaiI	ACGT	2 cut(s)	984, 1081
TaqI	TCGA	3 cut(s)	148, 245, 411
TasI	AATT	9 cut(s)	141, 177, 196, 214, 239, 337, 630, 764, 956
TatI	WGTACW	2 cut(s)	104, 732
TfiI	GAWTC	3 cut(s)	111, 302, 611
Tru1I	TTAA	2 cut(s)	134, 633
Tru9I	TTAA	2 cut(s)	134, 633
TscAI	CASTG	3 cut(s)	315, 946, 974
TseFI	GTSAC	1 cut(s)	1088
TseI	GCWGC	1 cut(s)	757
Tsp45I	GTSAC	1 cut(s)	1088
TspDTI	ATGAA	4 cut(s)	294, 665, 693, 969
TspGWI	ACGGA	1 cut(s)	1071
TspRI	CASTG	3 cut(s)	315, 946, 974
Van91I	CCANNNNNTGG	1 cut(s)	560
VpaK11BI	GGWCC	2 cut(s)	384, 434
VspI	ATTAAT	1 cut(s)	633
XapI	RAATTY	3 cut(s)	214, 239, 956
XceI	RCATGY	1 cut(s)	226
XspI	CTAG	2 cut(s)	108, 990
ZrmI	AGTACT	2 cut(s)	106, 734
Zsp2I	ATGCAT	1 cut(s)	796

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.