Prupe.7G023300_v2.0.a1
MYB Family

PHR1-LIKE 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0005519
Physical Location & Seq
Reverse (-)
3653381 .. 3661538
8158 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G023300.7

Sequence Viewer

Length: 870 bp
ATGTATCATGCCAAGAAGTTTTCAACAGCAAGCTTAGTCCCTCACAAACCCCAGAGCTCTGAGGAGCTAGCAAACGTTGGGGTTGTCAGTGGTGGCTCTTCAGTGAAAAGCCCAACGCCTTCTGGGGGAAGTGGCAAGCAACGCCTGCGGTGGACTTCGGATCTCCATGACCGCTTCGTCGACGCCATTACGCAACTCGGTGGACCAGATAGGGCAACACCTAAAGGTGTTCTGAGAGTGATGGGTGTTCCGGGACTAACTATTTATCATGTGAAAAGCCATTTACAGAAGTATCGCCTTGCAAAGTACCTGCCAGAGTCTCCGGCTGATGGTTCTAAAGACGAGAAGAAGGGTTCTGGAGACAGCCTTTCTTGCTCAGATTCTTCTCCTGGAGTCCAAATTAATGAGGCATTGAGGATGCAGATGGAAGTTCAGAAGCGTCTTCATGAACAGCTTGAGGTTCAAAGGCAGTTGCAGATGAGAATAGAAGCTCAGGGTAAATACTTGCAGAAGATCATTGAGGAGCAGGAGAAACTTGGTGGCGTTCTCAAAGGATCTGATGCATTGCCATCAGCGGAAGATAAGCAGAAGCCATCTCAGTTGGAGACAGCGGGCGATGCATCTGCCACGCCCTCATCTCCGCGAAAGAAACAAAGGGTGGATGATGGGTTGCCAGATGGTTGCACCACATCTAATGTGCCTCCAAAAGCTGACCAAAAGAATGAATTTGTGGGTCAGTGGGATCGAGACTTGTATGGAAGTGATGGTGGATTTGGATTCAACTTGCAAAGAGAGTTTAAAGAGAGAGATGGTGATGCTGCACAGAAAGCGCCAATGGAGTTAGATCCCTTGTGTGGTTCAAAACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

290

Amino Acids

31.49

Weight (kDa)

8.28

Isoelectric Point (pI)

51.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 176
Acc36I ACCTGC 1 cut(s) 318
AccI GTMKAC 1 cut(s) 180
AccII CGCG 1 cut(s) 643
AciI CCGC 5 cut(s) 148, 172, 575, 611, 641
AclI AACGTT 1 cut(s) 75
AclWI GGATC 4 cut(s) 168, 562, 750, 839
AcsI RAATTY 1 cut(s) 725
AcuI CTGAAG 1 cut(s) 84
AcyI GRCGYC 1 cut(s) 183
AfaI GTAC 1 cut(s) 308
AfiI CCNNNNNNNGG 3 cut(s) 125, 329, 854
AgsI TTSAA 4 cut(s) 24, 464, 781, 861
AjnI CCWGG 1 cut(s) 388
AluBI AGCT 6 cut(s) 33, 57, 67, 454, 491, 710
AluI AGCT 6 cut(s) 33, 57, 67, 454, 491, 710
Alw21I GWGCWC 1 cut(s) 59
Alw26I GTCTC 4 cut(s) 324, 354, 599, 741
AlwI GGATC 4 cut(s) 168, 562, 750, 839
ApeKI GCWGC 1 cut(s) 818
ApoI RAATTY 1 cut(s) 725
AseI ATTAAT 1 cut(s) 402
AspLEI GCGC 1 cut(s) 832
AspS9I GGNCC 1 cut(s) 203
AsuC2I CCSGG 1 cut(s) 252
AsuHPI GGTGA 1 cut(s) 824
AsuNHI GCTAGC 1 cut(s) 67
AvaII GGWCC 1 cut(s) 203
BaeI ACNNNNGTAYC 2 cut(s) 275, 308
BanII GRGCYC 1 cut(s) 59
BbsI GAAGAC 1 cut(s) 434
Bbv12I GWGCWC 1 cut(s) 59
BbvI GCAGC 1 cut(s) 805
BccI CCATC 9 cut(s) 235, 323, 418, 577, 601, 659, 671, 758, 803
BcgI CGANNNNNNTGC 2 cut(s) 605, 639
BciT130I CCWGG 1 cut(s) 390
BcnI CCSGG 1 cut(s) 252
BcoDI GTCTC 4 cut(s) 324, 354, 599, 741
BfaI CTAG 1 cut(s) 68
BfoI RGCGCY 1 cut(s) 833
BfuAI ACCTGC 1 cut(s) 318
BisI GCNGC 1 cut(s) 819
BlsI GCNGC 1 cut(s) 820
Bme1390I CCNGG 2 cut(s) 252, 390
Bme18I GGWCC 1 cut(s) 203
BmgT120I GGNCC 1 cut(s) 203
BmrFI CCNGG 2 cut(s) 252, 390
BmsI GCATC 5 cut(s) 408, 550, 607, 629, 805
BmtI GCTAGC 1 cut(s) 71
BpiI GAAGAC 1 cut(s) 434
BpmI CTGGAG 2 cut(s) 378, 411
Bpu10I CCTNAGC 1 cut(s) 492
BpuEI CTTGAG 1 cut(s) 476
BpuMI CCSGG 1 cut(s) 252
BsaHI GRCGYC 1 cut(s) 183
Bsc4I CCNNNNNNNGG 3 cut(s) 125, 329, 854
Bse3DI GCAATG 1 cut(s) 563
BseBI CCWGG 1 cut(s) 390
BseGI GGATG 2 cut(s) 423, 667
BseLI CCNNNNNNNGG 3 cut(s) 125, 329, 854
BseMI GCAATG 1 cut(s) 563
BseMII CTCAG 5 cut(s) 51, 224, 390, 506, 611
BseRI GAGGAG 2 cut(s) 77, 536
BseXI GCAGC 1 cut(s) 805
BsgI GTGCAG 1 cut(s) 804
Bsh1236I CGCG 1 cut(s) 643
BsiHKAI GWGCWC 1 cut(s) 59
BsiSI CCGG 2 cut(s) 251, 323
BslFI GGGAC 2 cut(s) 23, 267
BslI CCNNNNNNNGG 3 cut(s) 125, 329, 854
BsmAI GTCTC 4 cut(s) 324, 354, 599, 741
BsmFI GGGAC 2 cut(s) 23, 267
Bsp1286I GDGCHC 1 cut(s) 59
Bsp143I GATC 5 cut(s) 160, 513, 554, 742, 844
BspACI CCGC 5 cut(s) 148, 172, 575, 611, 641
BspCNI CTCAG 5 cut(s) 52, 225, 389, 505, 610
BspFNI CGCG 1 cut(s) 643
BspHI TCATGA 1 cut(s) 445
BspMI ACCTGC 1 cut(s) 318
BspOI GCTAGC 1 cut(s) 71
BspPI GGATC 4 cut(s) 168, 562, 750, 839
BspQI GCTCTTC 1 cut(s) 103
BsrDI GCAATG 1 cut(s) 563
BssMI GATC 5 cut(s) 160, 513, 554, 742, 844
BssNI GRCGYC 1 cut(s) 183
Bst2UI CCWGG 1 cut(s) 390
Bst6I CTCTTC 1 cut(s) 103
BstACI GRCGYC 1 cut(s) 183
BstAPI GCANNNNNTGC 1 cut(s) 145
BstC8I GCNNGC 5 cut(s) 31, 69, 137, 146, 613
BstDEI CTNAG 6 cut(s) 34, 60, 233, 376, 492, 597
BstF5I GGATG 2 cut(s) 423, 667
BstFNI CGCG 1 cut(s) 643
BstH2I RGCGCY 1 cut(s) 833
BstHHI GCGC 1 cut(s) 832
BstKTI GATC 5 cut(s) 163, 516, 557, 745, 847
BstMAI GTCTC 4 cut(s) 324, 354, 599, 741
BstMBI GATC 5 cut(s) 160, 513, 554, 742, 844
BstMWI GCNNNNNNNGC 5 cut(s) 141, 145, 372, 617, 827
BstNI CCWGG 1 cut(s) 390
BstSCI CCNGG 2 cut(s) 250, 388
BstUI CGCG 1 cut(s) 643
BstV1I GCAGC 1 cut(s) 805
BstV2I GAAGAC 1 cut(s) 434
BstX2I RGATCY 3 cut(s) 160, 554, 844
BstYI RGATCY 3 cut(s) 160, 554, 844
BtgZI GCGATG 1 cut(s) 630
BtsCI GGATG 2 cut(s) 423, 667
BtsIMutI CAGTG 3 cut(s) 94, 108, 743
BveI ACCTGC 1 cut(s) 318
Cac8I GCNNGC 5 cut(s) 31, 69, 137, 146, 613
CciI TCATGA 1 cut(s) 445
CfoI GCGC 1 cut(s) 832
Cfr13I GGNCC 1 cut(s) 203
CseI GACGC 2 cut(s) 191, 428
Csp6I GTAC 1 cut(s) 307
CviAII CATG 4 cut(s) 8, 167, 269, 446
CviQI GTAC 1 cut(s) 307
DdeI CTNAG 6 cut(s) 34, 60, 233, 376, 492, 597
DpnI GATC 5 cut(s) 162, 515, 556, 744, 846
DpnII GATC 5 cut(s) 160, 513, 554, 742, 844
DraI TTTAAA 1 cut(s) 799
DrdI GACNNNNNNGTC 1 cut(s) 176
DseDI GACNNNNNNGTC 1 cut(s) 176
Eam1104I CTCTTC 1 cut(s) 103
EarI CTCTTC 1 cut(s) 103
Ecl136II GAGCTC 1 cut(s) 57
Eco24I GRGCYC 1 cut(s) 59
Eco47I GGWCC 1 cut(s) 203
Eco53kI GAGCTC 1 cut(s) 57
Eco57I CTGAAG 1 cut(s) 84
EcoICRI GAGCTC 1 cut(s) 57
EcoRII CCWGG 1 cut(s) 388
EcoT22I ATGCAT 2 cut(s) 565, 622
EcoT38I GRGCYC 1 cut(s) 59
FaeI CATG 4 cut(s) 11, 170, 272, 449
FaiI YATR 5 cut(s) 9, 168, 270, 447, 756
FaqI GGGAC 2 cut(s) 23, 267
FatI CATG 4 cut(s) 7, 166, 268, 445
FauI CCCGC 1 cut(s) 604
FblI GTMKAC 1 cut(s) 180
Fnu4HI GCNGC 1 cut(s) 819
FokI GGATG 2 cut(s) 430, 674
FriOI GRGCYC 1 cut(s) 59
Fsp4HI GCNGC 1 cut(s) 819
FspBI CTAG 1 cut(s) 68
GlaI GCGC 1 cut(s) 831
GluI GCNGC 1 cut(s) 819
GsuI CTGGAG 2 cut(s) 378, 411
HaeII RGCGCY 1 cut(s) 833
HapII CCGG 2 cut(s) 251, 323
HgaI GACGC 2 cut(s) 191, 428
HhaI GCGC 1 cut(s) 832
Hin1I GRCGYC 1 cut(s) 183
Hin1II CATG 4 cut(s) 11, 170, 272, 449
Hin6I GCGC 1 cut(s) 830
HinP1I GCGC 1 cut(s) 830
HincII GTYRAC 1 cut(s) 181
HindII GTYRAC 1 cut(s) 181
HindIII AAGCTT 1 cut(s) 31
HinfI GANTC 4 cut(s) 317, 380, 393, 777
HpaII CCGG 2 cut(s) 251, 323
HphI GGTGA 1 cut(s) 824
Hpy166II GTNNAC 3 cut(s) 153, 181, 203
Hpy188I TCNGA 6 cut(s) 61, 160, 234, 379, 435, 559
Hpy188III TCNNGA 3 cut(s) 357, 446, 746
Hpy8I GTNNAC 3 cut(s) 153, 181, 203
Hpy99I CGWCG 2 cut(s) 182, 185
HpyAV CCTTC 2 cut(s) 129, 343
HpyCH4IV ACGT 1 cut(s) 75
HpyCH4V TGCA 9 cut(s) 302, 421, 475, 508, 563, 620, 684, 787, 821
HpyF10VI GCNNNNNNNGC 5 cut(s) 141, 145, 372, 617, 827
HpyF3I CTNAG 6 cut(s) 34, 60, 233, 376, 492, 597
HpySE526I ACGT 1 cut(s) 75
Hsp92I GRCGYC 1 cut(s) 183
Hsp92II CATG 4 cut(s) 11, 170, 272, 449
HspAI GCGC 1 cut(s) 830
Kzo9I GATC 5 cut(s) 160, 513, 554, 742, 844
LguI GCTCTTC 1 cut(s) 103
LmnI GCTCC 2 cut(s) 64, 523
Lsp1109I GCAGC 1 cut(s) 805
LweI GCATC 5 cut(s) 408, 550, 607, 629, 805
MaeI CTAG 1 cut(s) 68
MaeII ACGT 1 cut(s) 75
MalI GATC 5 cut(s) 162, 515, 556, 744, 846
MboI GATC 5 cut(s) 160, 513, 554, 742, 844
MboII GAAGA 6 cut(s) 90, 358, 375, 434, 523, 590
MflI RGATCY 3 cut(s) 160, 554, 844
MhlI GDGCHC 1 cut(s) 59
MluCI AATT 2 cut(s) 399, 725
MlyI GAGTC 2 cut(s) 326, 402
MmeI TCCRAC 1 cut(s) 582
MnlI CCTC 8 cut(s) 51, 55, 400, 408, 451, 514, 643, 711
Mph1103I ATGCAT 2 cut(s) 565, 622
MseI TTAA 2 cut(s) 402, 798
MspA1I CMGCKG 2 cut(s) 575, 611
MspI CCGG 2 cut(s) 251, 323
MspR9I CCNGG 2 cut(s) 252, 390
MvaI CCWGG 1 cut(s) 390
MvnI CGCG 1 cut(s) 643
MwoI GCNNNNNNNGC 5 cut(s) 141, 145, 372, 617, 827
NciI CCSGG 1 cut(s) 252
NdeII GATC 5 cut(s) 160, 513, 554, 742, 844
NheI GCTAGC 1 cut(s) 67
NlaIII CATG 4 cut(s) 11, 170, 272, 449
NsiI ATGCAT 2 cut(s) 565, 622
PagI TCATGA 1 cut(s) 445
PciSI GCTCTTC 1 cut(s) 103
PfeI GAWTC 2 cut(s) 380, 777
PfoI TCCNGGA 2 cut(s) 250, 388
PkrI GCNGC 1 cut(s) 820
PleI GAGTC 2 cut(s) 325, 401
PpsI GAGTC 2 cut(s) 325, 401
PshBI ATTAAT 1 cut(s) 402
Psp124BI GAGCTC 1 cut(s) 59
Psp1406I AACGTT 1 cut(s) 75
Psp6I CCWGG 1 cut(s) 388
PspGI CCWGG 1 cut(s) 388
PspPI GGNCC 1 cut(s) 203
PsuI RGATCY 3 cut(s) 160, 554, 844
RsaI GTAC 1 cut(s) 308
RsaNI GTAC 1 cut(s) 307
SacI GAGCTC 1 cut(s) 59
SalI GTCGAC 1 cut(s) 179
SapI GCTCTTC 1 cut(s) 103
SaqAI TTAA 2 cut(s) 402, 798
SatI GCNGC 1 cut(s) 819
Sau3AI GATC 5 cut(s) 160, 513, 554, 742, 844
Sau96I GGNCC 1 cut(s) 203
SchI GAGTC 2 cut(s) 326, 402
ScrFI CCNGG 2 cut(s) 252, 390
SduI GDGCHC 1 cut(s) 59
SfaNI GCATC 5 cut(s) 408, 550, 607, 629, 805
SgrDI CGTCGACG 1 cut(s) 179
SinI GGWCC 1 cut(s) 203
SmlI CTYRAG 1 cut(s) 455
SmoI CTYRAG 1 cut(s) 455
Sse9I AATT 2 cut(s) 399, 725
SsiI CCGC 5 cut(s) 148, 172, 575, 611, 641
SspMI CTAG 1 cut(s) 68
SstI GAGCTC 1 cut(s) 59
StyD4I CCNGG 2 cut(s) 250, 388
TaiI ACGT 1 cut(s) 78
TaqI TCGA 2 cut(s) 180, 745
TasI AATT 2 cut(s) 399, 725
TfiI GAWTC 2 cut(s) 380, 777
Tru1I TTAA 2 cut(s) 402, 798
Tru9I TTAA 2 cut(s) 402, 798
TscAI CASTG 3 cut(s) 94, 108, 743
TseI GCWGC 1 cut(s) 818
TspDTI ATGAA 3 cut(s) 434, 462, 738
TspRI CASTG 3 cut(s) 94, 108, 743
VpaK11BI GGWCC 1 cut(s) 203
VspI ATTAAT 1 cut(s) 402
XapI RAATTY 1 cut(s) 725
XmiI GTMKAC 1 cut(s) 180
XspI CTAG 1 cut(s) 68
Zsp2I ATGCAT 2 cut(s) 565, 622
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.