Rh3CG350200
MYB Family

PHR1-LIKE 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0005519
Physical Location & Seq
Reverse (-)
42019073 .. 42029996
10924 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG350200.1

Sequence Viewer

Length: 633 bp
ATGGGTGTTCCTGGACTAACTATTTATCATGTGAAGAGCCATTTACAGAAGTATCGACTTGCAAAGTACCTGCCAGAGTCTCCAGCTGATGGTTCTAAAGACGAGAAGAAAGGTTCTGGAGACAGCCTCTCTTGCTCAGATTCTTCTCCTGGAGTGCAAATTAACGAGGCGTTAAGGATGCAGATGGAAGTTCAGAAGCGTCTTCATGAACAACTTGAGGTTCAAAGACAACTACAAATGAGAATAGAGGCTCAGGGAAAGTACTTGCAGAAGATCATTGAGGAGCAACAGAAACTTGGTGGCGTCCTCAAAGGGTCTGATGCATTACCATCATCTGAGGATAAGCAAAAGCTATCCCAGTTGGAGACACCTGGTGATGCATCTACCGGGTTGTCATCTCCCCGAAAGAAACACAGGATGGATGATGGGTTACCGAGTGATTGCACCACGTCTGATCTGCCTCCAAAAGGTGACCAAAAGAATGAATTTGTTGGTCAGTGGGATCGGGACATGTACCCTAGTGATGGTGGATTTGGTTTCAACTTGCAAACAGAGTTGAAAGAGGCAGAAGGTGGTGGTGCTACACAGAAAGGGCCTCTGGAGCTACGTCCCTTGTGTGATTCAGAACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

210

Amino Acids

23.16

Weight (kDa)

5.49

Isoelectric Point (pI)

59.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_CC_LHEQLE PF14379 52 - 98 9.8e-25 MYB-CC type transfactor, LHEQLE motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 78
AccB7I CCANNNNNTGG 1 cut(s) 89
AclWI GGATC 1 cut(s) 510
AcsI RAATTY 1 cut(s) 485
AcyI GRCGYC 1 cut(s) 303
AdeI CACNNNGTG 1 cut(s) 374
AfaI GTAC 3 cut(s) 68, 263, 515
AfiI CCNNNNNNNGG 3 cut(s) 89, 467, 524
AflIII ACRYGT 1 cut(s) 510
AgsI TTSAA 3 cut(s) 224, 541, 559
AjiI CACGTC 1 cut(s) 450
AjnI CCWGG 3 cut(s) 10, 148, 370
AluBI AGCT 3 cut(s) 86, 352, 604
AluI AGCT 3 cut(s) 86, 352, 604
Alw26I GTCTC 3 cut(s) 84, 114, 359
AlwI GGATC 1 cut(s) 510
AoxI GGCC 1 cut(s) 593
ApoI RAATTY 1 cut(s) 485
AspS9I GGNCC 1 cut(s) 593
AsuC2I CCSGG 1 cut(s) 388
AsuHPI GGTGA 2 cut(s) 386, 482
BaeI ACNNNNGTAYC 2 cut(s) 35, 68
BbsI GAAGAC 1 cut(s) 194
BccI CCATC 6 cut(s) 83, 178, 337, 412, 419, 518
BciT130I CCWGG 3 cut(s) 12, 150, 372
BcnI CCSGG 1 cut(s) 388
BcoDI GTCTC 3 cut(s) 84, 114, 359
BfaI CTAG 1 cut(s) 519
BfuAI ACCTGC 1 cut(s) 78
BmcAI AGTACT 1 cut(s) 263
Bme1390I CCNGG 4 cut(s) 12, 150, 372, 388
BmgBI CACGTC 1 cut(s) 450
BmgT120I GGNCC 1 cut(s) 593
BmrFI CCNGG 4 cut(s) 12, 150, 372, 388
BmrI ACTGGG 1 cut(s) 352
BmsI GCATC 4 cut(s) 168, 310, 367, 389
BmuI ACTGGG 1 cut(s) 352
BpiI GAAGAC 1 cut(s) 194
BplI GAGNNNNNCTC 2 cut(s) 111, 143
BpmI CTGGAG 4 cut(s) 66, 138, 171, 620
Bpu10I CCTNAGC 1 cut(s) 252
BpuEI CTTGAG 1 cut(s) 236
BpuMI CCSGG 1 cut(s) 388
BsaHI GRCGYC 1 cut(s) 303
Bsc4I CCNNNNNNNGG 3 cut(s) 89, 467, 524
Bse1I ACTGG 1 cut(s) 358
BseBI CCWGG 3 cut(s) 12, 150, 372
BseGI GGATG 3 cut(s) 183, 423, 427
BseLI CCNNNNNNNGG 3 cut(s) 89, 467, 524
BseMII CTCAG 3 cut(s) 150, 266, 327
BseNI ACTGG 1 cut(s) 358
BseRI GAGGAG 1 cut(s) 296
BshFI GGCC 1 cut(s) 595
BsiSI CCGG 1 cut(s) 387
BslFI GGGAC 2 cut(s) 521, 594
BslI CCNNNNNNNGG 3 cut(s) 89, 467, 524
BsmAI GTCTC 3 cut(s) 84, 114, 359
BsmFI GGGAC 2 cut(s) 521, 594
BsnI GGCC 1 cut(s) 595
Bsp143I GATC 3 cut(s) 273, 454, 502
BspANI GGCC 1 cut(s) 595
BspCNI CTCAG 3 cut(s) 149, 265, 328
BspHI TCATGA 1 cut(s) 205
BspMI ACCTGC 1 cut(s) 78
BspPI GGATC 1 cut(s) 510
BspQI GCTCTTC 1 cut(s) 29
BsrI ACTGG 1 cut(s) 358
BssMI GATC 3 cut(s) 273, 454, 502
BssNI GRCGYC 1 cut(s) 303
Bst2UI CCWGG 3 cut(s) 12, 150, 372
Bst6I CTCTTC 1 cut(s) 29
BstACI GRCGYC 1 cut(s) 303
BstDEI CTNAG 3 cut(s) 136, 252, 336
BstEII GGTNACC 2 cut(s) 429, 470
BstENI CCTNNNNNAGG 1 cut(s) 465
BstF5I GGATG 3 cut(s) 183, 423, 427
BstKTI GATC 3 cut(s) 276, 457, 505
BstMAI GTCTC 3 cut(s) 84, 114, 359
BstMBI GATC 3 cut(s) 273, 454, 502
BstMWI GCNNNNNNNGC 2 cut(s) 132, 601
BstNI CCWGG 3 cut(s) 12, 150, 372
BstNSI RCATGY 1 cut(s) 514
BstPI GGTNACC 2 cut(s) 429, 470
BstSCI CCNGG 4 cut(s) 10, 148, 370, 386
BstV2I GAAGAC 1 cut(s) 194
BsuRI GGCC 1 cut(s) 595
BtrI CACGTC 1 cut(s) 450
BtsCI GGATG 3 cut(s) 183, 423, 427
BtsIMutI CAGTG 1 cut(s) 503
BveI ACCTGC 1 cut(s) 78
CciI TCATGA 1 cut(s) 205
Cfr13I GGNCC 1 cut(s) 593
CseI GACGC 2 cut(s) 188, 292
CsiI ACCWGGT 1 cut(s) 370
Csp6I GTAC 3 cut(s) 67, 262, 514
CviAII CATG 3 cut(s) 29, 206, 511
CviJI RGCY 7 cut(s) 39, 86, 126, 251, 352, 595, 604
CviKI_1 RGCY 7 cut(s) 39, 86, 126, 251, 352, 595, 604
CviQI GTAC 3 cut(s) 67, 262, 514
DdeI CTNAG 3 cut(s) 136, 252, 336
DpnI GATC 3 cut(s) 275, 456, 504
DpnII GATC 3 cut(s) 273, 454, 502
DraIII CACNNNGTG 1 cut(s) 374
Eam1104I CTCTTC 1 cut(s) 29
EarI CTCTTC 1 cut(s) 29
Eco91I GGTNACC 2 cut(s) 429, 470
EcoNI CCTNNNNNAGG 1 cut(s) 465
EcoO109I RGGNCCY 1 cut(s) 593
EcoO65I GGTNACC 2 cut(s) 429, 470
EcoRII CCWGG 3 cut(s) 10, 148, 370
EcoT22I ATGCAT 2 cut(s) 325, 382
FaeI CATG 3 cut(s) 32, 209, 514
FaiI YATR 3 cut(s) 30, 207, 512
FaqI GGGAC 2 cut(s) 521, 594
FatI CATG 3 cut(s) 28, 205, 510
FokI GGATG 3 cut(s) 190, 430, 434
FspBI CTAG 1 cut(s) 519
GsuI CTGGAG 4 cut(s) 66, 138, 171, 620
HaeIII GGCC 1 cut(s) 595
HapII CCGG 1 cut(s) 387
HgaI GACGC 2 cut(s) 188, 292
Hin1I GRCGYC 1 cut(s) 303
Hin1II CATG 3 cut(s) 32, 209, 514
HinfI GANTC 3 cut(s) 77, 140, 620
HpaII CCGG 1 cut(s) 387
HphI GGTGA 2 cut(s) 386, 482
Hpy188I TCNGA 6 cut(s) 139, 195, 319, 337, 454, 625
Hpy188III TCNNGA 4 cut(s) 117, 206, 506, 599
HpyAV CCTTC 1 cut(s) 563
HpyCH4IV ACGT 2 cut(s) 449, 607
HpyCH4V TGCA 8 cut(s) 62, 157, 181, 268, 323, 380, 444, 547
HpyF10VI GCNNNNNNNGC 2 cut(s) 132, 601
HpyF3I CTNAG 3 cut(s) 136, 252, 336
HpySE526I ACGT 2 cut(s) 449, 607
Hsp92I GRCGYC 1 cut(s) 303
Hsp92II CATG 3 cut(s) 32, 209, 514
Kzo9I GATC 3 cut(s) 273, 454, 502
LguI GCTCTTC 1 cut(s) 29
LmnI GCTCC 2 cut(s) 283, 601
LweI GCATC 4 cut(s) 168, 310, 367, 389
MabI ACCWGGT 1 cut(s) 370
MaeI CTAG 1 cut(s) 519
MaeII ACGT 2 cut(s) 449, 607
MaeIII GTNAC 2 cut(s) 429, 470
MalI GATC 3 cut(s) 275, 456, 504
MboI GATC 3 cut(s) 273, 454, 502
MboII GAAGA 5 cut(s) 46, 118, 135, 194, 283
MluCI AATT 2 cut(s) 159, 485
MlyI GAGTC 1 cut(s) 86
MmeI TCCRAC 1 cut(s) 342
Mph1103I ATGCAT 2 cut(s) 325, 382
MseI TTAA 2 cut(s) 162, 173
MspA1I CMGCKG 1 cut(s) 86
MspI CCGG 1 cut(s) 387
MspR9I CCNGG 4 cut(s) 12, 150, 372, 388
MvaI CCWGG 3 cut(s) 12, 150, 372
MwoI GCNNNNNNNGC 2 cut(s) 132, 601
NciI CCSGG 1 cut(s) 388
NdeII GATC 3 cut(s) 273, 454, 502
NlaIII CATG 3 cut(s) 32, 209, 514
NmuCI GTSAC 1 cut(s) 470
NsiI ATGCAT 2 cut(s) 325, 382
NspI RCATGY 1 cut(s) 514
PagI TCATGA 1 cut(s) 205
PciI ACATGT 1 cut(s) 510
PciSI GCTCTTC 1 cut(s) 29
PfeI GAWTC 2 cut(s) 140, 620
PflMI CCANNNNNTGG 1 cut(s) 89
PfoI TCCNGGA 2 cut(s) 10, 148
PleI GAGTC 1 cut(s) 85
PpsI GAGTC 1 cut(s) 85
PscI ACATGT 1 cut(s) 510
Psp6I CCWGG 3 cut(s) 10, 148, 370
PspEI GGTNACC 2 cut(s) 429, 470
PspGI CCWGG 3 cut(s) 10, 148, 370
PspPI GGNCC 1 cut(s) 593
PvuII CAGCTG 1 cut(s) 86
RsaI GTAC 3 cut(s) 68, 263, 515
RsaNI GTAC 3 cut(s) 67, 262, 514
SapI GCTCTTC 1 cut(s) 29
SaqAI TTAA 2 cut(s) 162, 173
Sau3AI GATC 3 cut(s) 273, 454, 502
Sau96I GGNCC 1 cut(s) 593
ScaI AGTACT 1 cut(s) 263
SchI GAGTC 1 cut(s) 86
ScrFI CCNGG 4 cut(s) 12, 150, 372, 388
SexAI ACCWGGT 1 cut(s) 370
SfaNI GCATC 4 cut(s) 168, 310, 367, 389
SmlI CTYRAG 1 cut(s) 215
SmoI CTYRAG 1 cut(s) 215
Sse9I AATT 2 cut(s) 159, 485
SspMI CTAG 1 cut(s) 519
StyD4I CCNGG 4 cut(s) 10, 148, 370, 386
TaiI ACGT 2 cut(s) 452, 610
TaqI TCGA 1 cut(s) 55
TasI AATT 2 cut(s) 159, 485
TatI WGTACW 1 cut(s) 261
TfiI GAWTC 2 cut(s) 140, 620
Tru1I TTAA 2 cut(s) 162, 173
Tru9I TTAA 2 cut(s) 162, 173
TscAI CASTG 1 cut(s) 503
TseFI GTSAC 1 cut(s) 470
Tsp45I GTSAC 1 cut(s) 470
TspDTI ATGAA 3 cut(s) 194, 222, 498
TspRI CASTG 1 cut(s) 503
Van91I CCANNNNNTGG 1 cut(s) 89
XagI CCTNNNNNAGG 1 cut(s) 465
XapI RAATTY 1 cut(s) 485
XceI RCATGY 1 cut(s) 514
XspI CTAG 1 cut(s) 519
ZrmI AGTACT 1 cut(s) 263
Zsp2I ATGCAT 2 cut(s) 325, 382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.