Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0005519

Physical Location & Seq

Genomic Coordinates Reverse (-)

17572114 .. 17578178

Gene Structure 6065 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1111000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGTATCACGCCAAGAAGTTTTCAACGGCGAGCTTGGTCCCACACAAGCCCCAGAGCTCCCAAGAGCTTGCGAACGTCGGGGTTGTCAGCGGCGGTTCCTCCGTGAAAAGCCCAACGCCTTCCGGCGGTGGAAGCGGGAAGCAACGGCTCCGCTGGACTTCAGATCTCCACGACCGCTTCGTCGATGCCATTACTCAGCTTGGCGGACCAGACAGGGCAACACCTAAAGGTGTTCTGAGAGTGATGGGTGTTCCAGGACTAACTATTTATCATGTGAAGAGCCATTTACAGAAATACCGACTTGCAAAGTACCTGCCAGAGTCTCCAGCTGATGGTTCTAAGGATGAGAAGAAGGGTTCTGGAGACAGCCTATCTTGCTCAGATTCTTCTCCTGGAGTGCAAATTAATGAGGCATTAAGGATGCAAATGGAAGTTCAGAAGCGTCTTCATGAACAGCTTGAGGTTCAAAGACAGTTGCAAATGAGAATAGAAGCTCAGGGTAAATACTTGCAGAAGATCATCGAGGAGCAGCAAAAGTTTGGTGGTTCACTCAAAGCATCAGAAGCGTTACCATCAGCTGAGGAAAAGCAGAAGCCAGCTCATTTGGAGACAATGGGCGATGCATCGGCCGCACCCTCATCTCCCCGAAAGAAACAAAGGGTGGATGAAGGGCTGGCAGACGGTTGCGCCACATCTAATCTGCCTCTAAAAGCTGACCAGAAGAACGAATTTGTGGGTCAGTGGGATCGAGAAGTGTATGGAAGTGACGGTGGATATGGATTTGGCTTGCAAACAGAGTTTAAAGAAAGAGATGGCGGTGCTGCACAGAAAGCACCTATGGAGTTAGATCCCTTGTGTGGTTCAAAACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

291

Amino Acids

31.46

Weight (kDa)

8.78

Isoelectric Point (pI)

50.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	49 - 100	1.1e-07	Myb-like DNA-binding domain
Myb_CC_LHEQLE	PF14379	133 - 179	6.4e-25	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005519)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29370 FvH4_1g29370 FvH4_1g29370 FvH4_1g29370
malus_domestica	MD12G1111000.v1.1 MD14G1091900.v1.1
prunus_persica	Prupe.7G023300_v2.0.a1 Prupe.7G023300_v2.0.a1 Prupe.7G023300_v2.0.a1 Prupe.7G023300_v2.0.a1 Prupe.7G023300_v2.0.a1 Prupe.7G023300_v2.0.a1 Prupe.7G023300_v2.0.a1 Prupe.7G023300_v2.0.a1
pyrus_communis	pycom12g09310 pycom14g08990
rosa_chinensis	RchiOBHm_Chr3g0495021
rosa_laevigata	RLG00000022655
rosa_multiflora	Rmu_ssc0000058.1_g000002 Rmu_ssc0000058.1_g000009
rosa_roxburghii	Rroxscaffold_6G00390840
rosa_rugosa	Rorug03G0269100 Rorug03G0269200
rosa_samantha	Rh3AG318300 Rh3BG353300 Rh3BG353400 Rh3CG350200 Rh3DG352700
rosa_wichuraiana	Rw3G027750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	179
Acc36I	ACCTGC	1 cut(s)	321
AccB7I	CCANNNNNTGG	1 cut(s)	332
AciI	CCGC	9 cut(s)	90, 93, 126, 135, 151, 175, 204, 630, 816
AclWI	GGATC	2 cut(s)	753, 842
AcoI	YGGCCR	1 cut(s)	627
AcsI	RAATTY	1 cut(s)	728
AcuI	CTGAAG	1 cut(s)	144
AfaI	GTAC	1 cut(s)	311
AfiI	CCNNNNNNNGG	3 cut(s)	125, 332, 857
AgsI	TTSAA	3 cut(s)	24, 467, 864
AjnI	CCWGG	2 cut(s)	253, 391
Alw21I	GWGCWC	1 cut(s)	59
Alw26I	GTCTC	3 cut(s)	327, 357, 602
AlwI	GGATC	2 cut(s)	753, 842
AoxI	GGCC	1 cut(s)	627
ApeKI	GCWGC	2 cut(s)	529, 821
ApoI	RAATTY	1 cut(s)	728
AseI	ATTAAT	1 cut(s)	405
AspLEI	GCGC	1 cut(s)	689
AspS9I	GGNCC	2 cut(s)	37, 206
AvaII	GGWCC	2 cut(s)	37, 206
BanII	GRGCYC	1 cut(s)	59
BbsI	GAAGAC	1 cut(s)	437
Bbv12I	GWGCWC	1 cut(s)	59
BbvCI	CCTCAGC	1 cut(s)	579
BbvI	GCAGC	2 cut(s)	541, 808
BccI	CCATC	4 cut(s)	238, 326, 580, 806
BceAI	ACGGC	2 cut(s)	42, 161
BciT130I	CCWGG	2 cut(s)	255, 393
BcoDI	GTCTC	3 cut(s)	327, 357, 602
BfuAI	ACCTGC	1 cut(s)	321
BglII	AGATCT	1 cut(s)	163
BisI	GCNGC	4 cut(s)	91, 530, 630, 822
BlsI	GCNGC	4 cut(s)	92, 531, 631, 823
Bme1390I	CCNGG	2 cut(s)	255, 393
Bme18I	GGWCC	2 cut(s)	37, 206
BmgT120I	GGNCC	2 cut(s)	37, 206
BmiI	GGNNCC	3 cut(s)	39, 97, 149
BmrFI	CCNGG	2 cut(s)	255, 393
BmsI	GCATC	5 cut(s)	175, 411, 566, 610, 632
BpiI	GAAGAC	1 cut(s)	437
BpmI	CTGGAG	3 cut(s)	309, 381, 414
Bpu10I	CCTNAGC	2 cut(s)	495, 579
BpuEI	CTTGAG	1 cut(s)	479
Bsc4I	CCNNNNNNNGG	3 cut(s)	125, 332, 857
BseBI	CCWGG	2 cut(s)	255, 393
BseGI	GGATG	3 cut(s)	349, 426, 670
BseLI	CCNNNNNNNGG	3 cut(s)	125, 332, 857
BseMII	CTCAG	5 cut(s)	209, 227, 393, 509, 570
BseRI	GAGGAG	1 cut(s)	539
BseX3I	CGGCCG	1 cut(s)	627
BseXI	GCAGC	2 cut(s)	541, 808
BsgI	GTGCAG	1 cut(s)	807
Bsh1285I	CGRYCG	2 cut(s)	175, 630
BshFI	GGCC	1 cut(s)	629
BsiEI	CGRYCG	2 cut(s)	175, 630
BsiHKAI	GWGCWC	1 cut(s)	59
BsiSI	CCGG	1 cut(s)	123
BslFI	GGGAC	1 cut(s)	23
BslI	CCNNNNNNNGG	3 cut(s)	125, 332, 857
BsmAI	GTCTC	3 cut(s)	327, 357, 602
BsmFI	GGGAC	1 cut(s)	23
BsnI	GGCC	1 cut(s)	629
Bsp1286I	GDGCHC	1 cut(s)	59
Bsp143I	GATC	4 cut(s)	163, 516, 745, 847
BspACI	CCGC	9 cut(s)	90, 93, 126, 135, 151, 175, 204, 630, 816
BspANI	GGCC	1 cut(s)	629
BspCNI	CTCAG	5 cut(s)	208, 228, 392, 508, 571
BspHI	TCATGA	1 cut(s)	448
BspLI	GGNNCC	3 cut(s)	39, 97, 149
BspMI	ACCTGC	1 cut(s)	321
BspPI	GGATC	2 cut(s)	753, 842
BspQI	GCTCTTC	1 cut(s)	272
BssMI	GATC	4 cut(s)	163, 516, 745, 847
Bst2UI	CCWGG	2 cut(s)	255, 393
Bst4CI	ACNGT	3 cut(s)	474, 683, 770
Bst6I	CTCTTC	1 cut(s)	272
BstC8I	GCNNGC	5 cut(s)	31, 69, 597, 675, 788
BstDEI	CTNAG	6 cut(s)	195, 236, 339, 379, 495, 579
BstF5I	GGATG	3 cut(s)	349, 426, 670
BstHHI	GCGC	1 cut(s)	689
BstKTI	GATC	4 cut(s)	166, 519, 748, 850
BstMAI	GTCTC	3 cut(s)	327, 357, 602
BstMBI	GATC	4 cut(s)	163, 516, 745, 847
BstMCI	CGRYCG	2 cut(s)	175, 630
BstMWI	GCNNNNNNNGC	5 cut(s)	132, 375, 563, 629, 830
BstNI	CCWGG	2 cut(s)	255, 393
BstSCI	CCNGG	2 cut(s)	253, 391
BstV1I	GCAGC	2 cut(s)	541, 808
BstV2I	GAAGAC	1 cut(s)	437
BstX2I	RGATCY	2 cut(s)	163, 847
BstYI	RGATCY	2 cut(s)	163, 847
BstZI	CGGCCG	1 cut(s)	627
BsuRI	GGCC	1 cut(s)	629
BtgZI	GCGATG	1 cut(s)	633
BtsCI	GGATG	3 cut(s)	349, 426, 670
BtsIMutI	CAGTG	1 cut(s)	746
BveI	ACCTGC	1 cut(s)	321
Cac8I	GCNNGC	5 cut(s)	31, 69, 597, 675, 788
CciI	TCATGA	1 cut(s)	448
CfoI	GCGC	1 cut(s)	689
Cfr13I	GGNCC	2 cut(s)	37, 206
CseI	GACGC	1 cut(s)	431
Csp6I	GTAC	1 cut(s)	310
CviAII	CATG	2 cut(s)	272, 449
CviQI	GTAC	1 cut(s)	310
DdeI	CTNAG	6 cut(s)	195, 236, 339, 379, 495, 579
DpnI	GATC	4 cut(s)	165, 518, 747, 849
DpnII	GATC	4 cut(s)	163, 516, 745, 847
DraI	TTTAAA	1 cut(s)	802
DrdI	GACNNNNNNGTC	1 cut(s)	179
DseDI	GACNNNNNNGTC	1 cut(s)	179
EaeI	YGGCCR	1 cut(s)	627
EagI	CGGCCG	1 cut(s)	627
Eam1104I	CTCTTC	1 cut(s)	272
EarI	CTCTTC	1 cut(s)	272
EciI	GGCGGA	1 cut(s)	219
Ecl136II	GAGCTC	1 cut(s)	57
EclXI	CGGCCG	1 cut(s)	627
Eco24I	GRGCYC	1 cut(s)	59
Eco47I	GGWCC	2 cut(s)	37, 206
Eco52I	CGGCCG	1 cut(s)	627
Eco53kI	GAGCTC	1 cut(s)	57
Eco57I	CTGAAG	1 cut(s)	144
EcoICRI	GAGCTC	1 cut(s)	57
EcoRII	CCWGG	2 cut(s)	253, 391
EcoT22I	ATGCAT	1 cut(s)	625
EcoT38I	GRGCYC	1 cut(s)	59
FaeI	CATG	2 cut(s)	275, 452
FaiI	YATR	5 cut(s)	273, 450, 759, 777, 839
FaqI	GGGAC	1 cut(s)	23
FatI	CATG	2 cut(s)	271, 448
FauI	CCCGC	1 cut(s)	128
Fnu4HI	GCNGC	4 cut(s)	91, 530, 630, 822
FokI	GGATG	3 cut(s)	356, 433, 677
FriOI	GRGCYC	1 cut(s)	59
Fsp4HI	GCNGC	4 cut(s)	91, 530, 630, 822
GlaI	GCGC	1 cut(s)	688
GluI	GCNGC	4 cut(s)	91, 530, 630, 822
GsuI	CTGGAG	3 cut(s)	309, 381, 414
HaeIII	GGCC	1 cut(s)	629
HapII	CCGG	1 cut(s)	123
HgaI	GACGC	1 cut(s)	431
HhaI	GCGC	1 cut(s)	689
Hin1II	CATG	2 cut(s)	275, 452
Hin6I	GCGC	1 cut(s)	687
HinP1I	GCGC	1 cut(s)	687
HinfI	GANTC	2 cut(s)	320, 383
HpaII	CCGG	1 cut(s)	123
Hpy166II	GTNNAC	1 cut(s)	548
Hpy188I	TCNGA	5 cut(s)	163, 237, 382, 438, 562
Hpy188III	TCNNGA	3 cut(s)	360, 449, 749
Hpy8I	GTNNAC	1 cut(s)	548
Hpy99I	CGWCG	2 cut(s)	80, 185
HpyAV	CCTTC	3 cut(s)	129, 346, 662
HpyCH4III	ACNGT	3 cut(s)	474, 683, 770
HpyCH4IV	ACGT	1 cut(s)	75
HpyCH4V	TGCA	8 cut(s)	305, 400, 424, 478, 511, 623, 790, 824
HpyF10VI	GCNNNNNNNGC	5 cut(s)	132, 375, 563, 629, 830
HpyF3I	CTNAG	6 cut(s)	195, 236, 339, 379, 495, 579
HpySE526I	ACGT	1 cut(s)	75
Hsp92II	CATG	2 cut(s)	275, 452
HspAI	GCGC	1 cut(s)	687
Kzo9I	GATC	4 cut(s)	163, 516, 745, 847
LguI	GCTCTTC	1 cut(s)	272
LmnI	GCTCC	3 cut(s)	62, 153, 526
Lsp1109I	GCAGC	2 cut(s)	541, 808
LweI	GCATC	5 cut(s)	175, 411, 566, 610, 632
MaeII	ACGT	1 cut(s)	75
MaeIII	GTNAC	2 cut(s)	567, 764
MalI	GATC	4 cut(s)	165, 518, 747, 849
MboI	GATC	4 cut(s)	163, 516, 745, 847
MboII	GAAGA	6 cut(s)	289, 361, 378, 437, 526, 733
MflI	RGATCY	2 cut(s)	163, 847
MhlI	GDGCHC	1 cut(s)	59
MluCI	AATT	2 cut(s)	402, 728
MlyI	GAGTC	1 cut(s)	329
MnlI	CCTC	7 cut(s)	109, 403, 454, 517, 574, 646, 714
Mph1103I	ATGCAT	1 cut(s)	625
MseI	TTAA	3 cut(s)	405, 416, 801
MspA1I	CMGCKG	4 cut(s)	90, 153, 329, 578
MspI	CCGG	1 cut(s)	123
MspR9I	CCNGG	2 cut(s)	255, 393
MvaI	CCWGG	2 cut(s)	255, 393
MwoI	GCNNNNNNNGC	5 cut(s)	132, 375, 563, 629, 830
NdeII	GATC	4 cut(s)	163, 516, 745, 847
NlaIII	CATG	2 cut(s)	275, 452
NlaIV	GGNNCC	3 cut(s)	39, 97, 149
NmuCI	GTSAC	1 cut(s)	764
NsiI	ATGCAT	1 cut(s)	625
PagI	TCATGA	1 cut(s)	448
PciSI	GCTCTTC	1 cut(s)	272
PcsI	WCGNNNNNNNCGW	1 cut(s)	177
PfeI	GAWTC	1 cut(s)	383
PflMI	CCANNNNNTGG	1 cut(s)	332
PfoI	TCCNGGA	2 cut(s)	253, 391
PkrI	GCNGC	4 cut(s)	92, 531, 631, 823
PleI	GAGTC	1 cut(s)	328
PpsI	GAGTC	1 cut(s)	328
PshBI	ATTAAT	1 cut(s)	405
Psp124BI	GAGCTC	1 cut(s)	59
Psp6I	CCWGG	2 cut(s)	253, 391
PspGI	CCWGG	2 cut(s)	253, 391
PspN4I	GGNNCC	3 cut(s)	39, 97, 149
PspPI	GGNCC	2 cut(s)	37, 206
PsuI	RGATCY	2 cut(s)	163, 847
PvuII	CAGCTG	2 cut(s)	329, 578
RsaI	GTAC	1 cut(s)	311
RsaNI	GTAC	1 cut(s)	310
SacI	GAGCTC	1 cut(s)	59
SapI	GCTCTTC	1 cut(s)	272
SaqAI	TTAA	3 cut(s)	405, 416, 801
SatI	GCNGC	4 cut(s)	91, 530, 630, 822
Sau3AI	GATC	4 cut(s)	163, 516, 745, 847
Sau96I	GGNCC	2 cut(s)	37, 206
SchI	GAGTC	1 cut(s)	329
ScrFI	CCNGG	2 cut(s)	255, 393
SduI	GDGCHC	1 cut(s)	59
SfaNI	GCATC	5 cut(s)	175, 411, 566, 610, 632
SinI	GGWCC	2 cut(s)	37, 206
SmlI	CTYRAG	1 cut(s)	458
SmoI	CTYRAG	1 cut(s)	458
Sse9I	AATT	2 cut(s)	402, 728
SsiI	CCGC	9 cut(s)	90, 93, 126, 135, 151, 175, 204, 630, 816
SstI	GAGCTC	1 cut(s)	59
StyD4I	CCNGG	2 cut(s)	253, 391
TaaI	ACNGT	3 cut(s)	474, 683, 770
TaiI	ACGT	1 cut(s)	78
TaqI	TCGA	3 cut(s)	183, 522, 748
TasI	AATT	2 cut(s)	402, 728
TauI	GCSGC	2 cut(s)	93, 632
TfiI	GAWTC	1 cut(s)	383
Tru1I	TTAA	3 cut(s)	405, 416, 801
Tru9I	TTAA	3 cut(s)	405, 416, 801
TscAI	CASTG	1 cut(s)	746
TseFI	GTSAC	1 cut(s)	764
TseI	GCWGC	2 cut(s)	529, 821
Tsp45I	GTSAC	1 cut(s)	764
TspDTI	ATGAA	3 cut(s)	437, 465, 681
TspGWI	ACGGA	1 cut(s)	91
TspRI	CASTG	1 cut(s)	746
Van91I	CCANNNNNTGG	1 cut(s)	332
VpaK11BI	GGWCC	2 cut(s)	37, 206
VspI	ATTAAT	1 cut(s)	405
XapI	RAATTY	1 cut(s)	728
Zsp2I	ATGCAT	1 cut(s)	625

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.