Rh3BG353400
MYB Family

PHR1-LIKE 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0005519
Physical Location & Seq
Reverse (-)
41567485 .. 41570779
3295 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG353400.1

Sequence Viewer

Length: 405 bp
ATGTATCACGCCAAGAAATTCTCGACGGCGAGCTTAGTCCCGCATAAACCTCAGACTTCTGAACAGCTTGCAAGTGATTCTTCAGTGAAAAACCCGACCCCTTGCGCTTCGGCTTCGGCTTCTGCTTCTGCTTCTGCCGGAAATGGAAAACAACGACTGCGCTGGACTTCCGATCTCCATGACCGCTTCGTCGACGCCATCACACAACTTGGTGGACCAGATAGGGCAACACCTAAAGGTGTCCTGAGAGTGATGGGTGTTCCTGGACTAACTATTTATCATGTGAAGAGCCATTTACAGAAGTATCGACTTGCAAAGTACCTGCCAGAGTCTCCAGCTGATGGTTCTAAAGACGAGAAGAAAGGTTCTGGAGACAGCCTCTCTTGCTCAGATTCTTCTCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

134

Amino Acids

14.24

Weight (kDa)

9.45

Isoelectric Point (pI)

44.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 52 - 103 2.6e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 188
Acc36I ACCTGC 1 cut(s) 330
AccB7I CCANNNNNTGG 1 cut(s) 341
AccI GTMKAC 1 cut(s) 192
AciI CCGC 2 cut(s) 41, 184
AcsI RAATTY 1 cut(s) 17
AcuI CTGAAG 1 cut(s) 66
AcyI GRCGYC 1 cut(s) 195
AfaI GTAC 1 cut(s) 320
AfiI CCNNNNNNNGG 1 cut(s) 341
AjnI CCWGG 1 cut(s) 262
AluBI AGCT 3 cut(s) 33, 67, 338
AluI AGCT 3 cut(s) 33, 67, 338
Alw26I GTCTC 2 cut(s) 336, 366
ApoI RAATTY 1 cut(s) 17
AspLEI GCGC 2 cut(s) 107, 162
AspS9I GGNCC 1 cut(s) 215
AvaII GGWCC 1 cut(s) 215
BaeI ACNNNNGTAYC 2 cut(s) 287, 320
BccI CCATC 3 cut(s) 206, 247, 335
BceAI ACGGC 1 cut(s) 42
BciT130I CCWGG 1 cut(s) 264
BcoDI GTCTC 2 cut(s) 336, 366
BfuAI ACCTGC 1 cut(s) 330
Bme1390I CCNGG 1 cut(s) 264
Bme18I GGWCC 1 cut(s) 215
BmgT120I GGNCC 1 cut(s) 215
BmrFI CCNGG 1 cut(s) 264
BplI GAGNNNNNCTC 2 cut(s) 363, 395
BpmI CTGGAG 2 cut(s) 318, 390
BsaHI GRCGYC 1 cut(s) 195
Bsc4I CCNNNNNNNGG 1 cut(s) 341
BseBI CCWGG 1 cut(s) 264
BseLI CCNNNNNNNGG 1 cut(s) 341
BseMII CTCAG 3 cut(s) 65, 236, 402
BsiSI CCGG 1 cut(s) 138
BslFI GGGAC 1 cut(s) 23
BslI CCNNNNNNNGG 1 cut(s) 341
BsmAI GTCTC 2 cut(s) 336, 366
BsmFI GGGAC 1 cut(s) 23
Bsp143I GATC 1 cut(s) 172
BspACI CCGC 2 cut(s) 41, 184
BspCNI CTCAG 3 cut(s) 64, 237, 401
BspMI ACCTGC 1 cut(s) 330
BspQI GCTCTTC 1 cut(s) 281
BssMI GATC 1 cut(s) 172
BssNI GRCGYC 1 cut(s) 195
Bst2UI CCWGG 1 cut(s) 264
Bst6I CTCTTC 1 cut(s) 281
BstACI GRCGYC 1 cut(s) 195
BstC8I GCNNGC 2 cut(s) 31, 69
BstDEI CTNAG 4 cut(s) 34, 51, 245, 388
BstHHI GCGC 2 cut(s) 107, 162
BstKTI GATC 1 cut(s) 175
BstMAI GTCTC 2 cut(s) 336, 366
BstMBI GATC 1 cut(s) 172
BstMWI GCNNNNNNNGC 1 cut(s) 384
BstNI CCWGG 1 cut(s) 264
BstSCI CCNGG 1 cut(s) 262
BtsIMutI CAGTG 1 cut(s) 90
BveI ACCTGC 1 cut(s) 330
Cac8I GCNNGC 2 cut(s) 31, 69
CfoI GCGC 2 cut(s) 107, 162
Cfr13I GGNCC 1 cut(s) 215
CseI GACGC 1 cut(s) 203
Csp6I GTAC 1 cut(s) 319
CviAII CATG 2 cut(s) 179, 281
CviJI RGCY 7 cut(s) 33, 67, 113, 119, 291, 338, 378
CviKI_1 RGCY 7 cut(s) 33, 67, 113, 119, 291, 338, 378
CviQI GTAC 1 cut(s) 319
DdeI CTNAG 4 cut(s) 34, 51, 245, 388
DpnI GATC 1 cut(s) 174
DpnII GATC 1 cut(s) 172
DrdI GACNNNNNNGTC 1 cut(s) 188
DseDI GACNNNNNNGTC 1 cut(s) 188
Eam1104I CTCTTC 1 cut(s) 281
EarI CTCTTC 1 cut(s) 281
Eco47I GGWCC 1 cut(s) 215
Eco57I CTGAAG 1 cut(s) 66
EcoRII CCWGG 1 cut(s) 262
FaeI CATG 2 cut(s) 182, 284
FaiI YATR 3 cut(s) 45, 180, 282
FalI AAGNNNNNCTT 2 cut(s) 64, 96
FaqI GGGAC 1 cut(s) 23
FatI CATG 2 cut(s) 178, 280
FauI CCCGC 1 cut(s) 48
FblI GTMKAC 1 cut(s) 192
GlaI GCGC 2 cut(s) 106, 161
GsuI CTGGAG 2 cut(s) 318, 390
HapII CCGG 1 cut(s) 138
HgaI GACGC 1 cut(s) 203
HhaI GCGC 2 cut(s) 107, 162
Hin1I GRCGYC 1 cut(s) 195
Hin1II CATG 2 cut(s) 182, 284
Hin6I GCGC 2 cut(s) 105, 160
HinP1I GCGC 2 cut(s) 105, 160
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
HinfI GANTC 3 cut(s) 77, 329, 392
HpaII CCGG 1 cut(s) 138
Hpy166II GTNNAC 2 cut(s) 193, 215
Hpy188I TCNGA 4 cut(s) 54, 61, 172, 391
Hpy188III TCNNGA 3 cut(s) 22, 244, 369
Hpy8I GTNNAC 2 cut(s) 193, 215
Hpy99I CGWCG 3 cut(s) 28, 194, 197
HpyCH4V TGCA 2 cut(s) 71, 314
HpyF10VI GCNNNNNNNGC 1 cut(s) 384
HpyF3I CTNAG 4 cut(s) 34, 51, 245, 388
Hsp92I GRCGYC 1 cut(s) 195
Hsp92II CATG 2 cut(s) 182, 284
HspAI GCGC 2 cut(s) 105, 160
Kzo9I GATC 1 cut(s) 172
LguI GCTCTTC 1 cut(s) 281
MalI GATC 1 cut(s) 174
MboI GATC 1 cut(s) 172
MboII GAAGA 4 cut(s) 72, 298, 370, 387
MluCI AATT 1 cut(s) 17
MlyI GAGTC 1 cut(s) 338
MnlI CCTC 2 cut(s) 60, 389
MspA1I CMGCKG 1 cut(s) 338
MspI CCGG 1 cut(s) 138
MspR9I CCNGG 1 cut(s) 264
MvaI CCWGG 1 cut(s) 264
MwoI GCNNNNNNNGC 1 cut(s) 384
NdeII GATC 1 cut(s) 172
NlaIII CATG 2 cut(s) 182, 284
PciSI GCTCTTC 1 cut(s) 281
PfeI GAWTC 2 cut(s) 77, 392
PflMI CCANNNNNTGG 1 cut(s) 341
PfoI TCCNGGA 1 cut(s) 262
PleI GAGTC 1 cut(s) 337
PpsI GAGTC 1 cut(s) 337
Psp6I CCWGG 1 cut(s) 262
PspGI CCWGG 1 cut(s) 262
PspPI GGNCC 1 cut(s) 215
PvuII CAGCTG 1 cut(s) 338
RsaI GTAC 1 cut(s) 320
RsaNI GTAC 1 cut(s) 319
SalI GTCGAC 1 cut(s) 191
SapI GCTCTTC 1 cut(s) 281
Sau3AI GATC 1 cut(s) 172
Sau96I GGNCC 1 cut(s) 215
SchI GAGTC 1 cut(s) 338
ScrFI CCNGG 1 cut(s) 264
SetI ASST 8 cut(s) 35, 52, 69, 235, 241, 324, 340, 367
SgrDI CGTCGACG 1 cut(s) 191
SinI GGWCC 1 cut(s) 215
Sse9I AATT 1 cut(s) 17
SsiI CCGC 2 cut(s) 41, 184
StyD4I CCNGG 1 cut(s) 262
TaqI TCGA 3 cut(s) 23, 192, 307
TasI AATT 1 cut(s) 17
TfiI GAWTC 2 cut(s) 77, 392
TscAI CASTG 1 cut(s) 90
TspGWI ACGGA 1 cut(s) 390
TspRI CASTG 1 cut(s) 90
Van91I CCANNNNNTGG 1 cut(s) 341
VpaK11BI GGWCC 1 cut(s) 215
XapI RAATTY 1 cut(s) 17
XmiI GTMKAC 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.