Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000058.1

Orthogroup ID

OG0005519

Physical Location & Seq

Genomic Coordinates Reverse (-)

45523 .. 55682

Gene Structure 10160 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000058.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ctgctccgtagctctcttgtttgttcaagtgctgtcaacatgtatcacgccaagaaattctcgacggcgagcttagtcccgcataaacctcagacttctgaacagcttgcaagtgattcttcagtgaaaaacccgaccccttgcgcttcggcttcggcttctgcttctgcttctgccggaaatggaaaacaacgactgcgctggacctccgatctccatgaccgcttcgtcgacgccatcacacaacttggtggaccagatagggcaacacctaaaggtgtcctgagagtgatgggtgttcctggactaactatttatcatgtgaagagccatttacagaagtatcgtcttgcaaagtacctgccagagtctccagctgatggttctaaagacgagaagaaaggttctggagacagcctctcttgctcagattcttctcctggagtgcaaattaacgaggcgttaaggatgcagatggaagttcagaagcgtcttcatgaacaacttgaggcatccaaaactgcaatttactattttaaacacgaacggttccggttcgacagattcggacaaccatataaacaagccttcaaatccctcccctactggtcctccaacgactacgacctctacatctcctccgatcctgatttcccgccggcccagttcgtcaccgtccacgaagaagacgacgaagactttgacggcgaagacgacatcttttcccagtaccagtccacaatccatgctgagcagaaccgcgacgatgtcgtttcggagcccaattccatttccaacaccgaagacttgtcgttggaccgcgagaaccaggtcaattttgtcatggatctattccagcagtgcgttgagcagtctcaggtaacggcccgttccgttttggtctccagcgactctgattttggggttgtagggttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

312

Amino Acids

34.78

Weight (kDa)

5.21

Isoelectric Point (pI)

45.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005519)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29370 FvH4_1g29370 FvH4_1g29370 FvH4_1g29370
malus_domestica	MD12G1111000.v1.1 MD14G1091900.v1.1
prunus_persica	Prupe.7G023300_v2.0.a1 Prupe.7G023300_v2.0.a1 Prupe.7G023300_v2.0.a1 Prupe.7G023300_v2.0.a1 Prupe.7G023300_v2.0.a1 Prupe.7G023300_v2.0.a1 Prupe.7G023300_v2.0.a1 Prupe.7G023300_v2.0.a1
pyrus_communis	pycom12g09310 pycom14g08990
rosa_chinensis	RchiOBHm_Chr3g0495021
rosa_laevigata	RLG00000022655
rosa_multiflora	Rmu_ssc0000058.1_g000002 Rmu_ssc0000058.1_g000009
rosa_roxburghii	Rroxscaffold_6G00390840
rosa_rugosa	Rorug03G0269100 Rorug03G0269200
rosa_samantha	Rh3AG318300 Rh3BG353300 Rh3BG353400 Rh3CG350200 Rh3DG352700
rosa_wichuraiana	Rw3G027750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	227
Acc36I	ACCTGC	1 cut(s)	369
AccB7I	CCANNNNNTGG	1 cut(s)	380
AccI	GTMKAC	1 cut(s)	231
AccII	CGCG	2 cut(s)	762, 822
AciI	CCGC	5 cut(s)	80, 223, 656, 760, 820
AclWI	GGATC	2 cut(s)	638, 855
AcsI	RAATTY	1 cut(s)	56
AcuI	CTGAAG	1 cut(s)	105
AcyI	GRCGYC	1 cut(s)	234
AfaI	GTAC	2 cut(s)	359, 731
AfiI	CCNNNNNNNGG	1 cut(s)	380
AflIII	ACRYGT	1 cut(s)	39
AgsI	TTSAA	2 cut(s)	27, 592
AjnI	CCWGG	3 cut(s)	301, 439, 828
AluBI	AGCT	4 cut(s)	12, 72, 106, 377
AluI	AGCT	4 cut(s)	12, 72, 106, 377
Alw26I	GTCTC	4 cut(s)	375, 405, 879, 907
AlwI	GGATC	2 cut(s)	638, 855
AoxI	GGCC	2 cut(s)	660, 885
ApoI	RAATTY	1 cut(s)	56
ArsI	GACNNNNNNTTYG	4 cut(s)	683, 715, 902, 934
AspLEI	GCGC	2 cut(s)	146, 201
AspS9I	GGNCC	6 cut(s)	204, 254, 609, 661, 817, 886
AsuHPI	GGTGA	1 cut(s)	664
AvaII	GGWCC	4 cut(s)	204, 254, 609, 817
BaeI	ACNNNNGTAYC	2 cut(s)	326, 359
BanII	GRGCYC	1 cut(s)	783
BbsI	GAAGAC	5 cut(s)	485, 693, 702, 717, 810
BccI	CCATC	4 cut(s)	245, 286, 374, 469
BceAI	ACGGC	3 cut(s)	81, 721, 900
BciT130I	CCWGG	3 cut(s)	303, 441, 830
BcoDI	GTCTC	4 cut(s)	375, 405, 879, 907
BfuAI	ACCTGC	1 cut(s)	369
BlpI	GCTNAGC	1 cut(s)	750
Bme1390I	CCNGG	3 cut(s)	303, 441, 830
Bme18I	GGWCC	4 cut(s)	204, 254, 609, 817
BmgT120I	GGNCC	6 cut(s)	204, 254, 609, 661, 817, 886
BmiI	GGNNCC	2 cut(s)	551, 780
BmrFI	CCNGG	3 cut(s)	303, 441, 830
BmrI	ACTGGG	2 cut(s)	658, 721
BmsI	GCATC	2 cut(s)	459, 521
BmuI	ACTGGG	2 cut(s)	658, 721
BpiI	GAAGAC	5 cut(s)	485, 693, 702, 717, 810
BplI	GAGNNNNNCTC	2 cut(s)	402, 434
BpmI	CTGGAG	4 cut(s)	357, 429, 462, 889
Bpu1102I	GCTNAGC	1 cut(s)	750
BpuEI	CTTGAG	1 cut(s)	527
BsaHI	GRCGYC	1 cut(s)	234
BsaI	GGTCTC	1 cut(s)	907
BsaWI	WCCGGW	1 cut(s)	552
BsaXI	ACNNNNNCTCC	4 cut(s)	596, 623, 626, 653
Bsc4I	CCNNNNNNNGG	1 cut(s)	380
Bse118I	RCCGGY	1 cut(s)	658
Bse1I	ACTGG	4 cut(s)	611, 664, 727, 733
BseBI	CCWGG	3 cut(s)	303, 441, 830
BseGI	GGATG	2 cut(s)	474, 512
BseLI	CCNNNNNNNGG	1 cut(s)	380
BseMII	CTCAG	5 cut(s)	104, 275, 441, 741, 890
BseNI	ACTGG	4 cut(s)	611, 664, 727, 733
BseRI	GAGGAG	1 cut(s)	628
Bsh1236I	CGCG	2 cut(s)	762, 822
BshFI	GGCC	2 cut(s)	662, 887
BsiSI	CCGG	3 cut(s)	177, 553, 659
BslFI	GGGAC	1 cut(s)	62
BslI	CCNNNNNNNGG	1 cut(s)	380
BsmAI	GTCTC	4 cut(s)	375, 405, 879, 907
BsmFI	GGGAC	1 cut(s)	62
BsnI	GGCC	2 cut(s)	662, 887
Bso31I	GGTCTC	1 cut(s)	907
Bsp1286I	GDGCHC	1 cut(s)	783
Bsp143I	GATC	3 cut(s)	211, 643, 847
Bsp1720I	GCTNAGC	1 cut(s)	750
BspACI	CCGC	5 cut(s)	80, 223, 656, 760, 820
BspANI	GGCC	2 cut(s)	662, 887
BspCNI	CTCAG	5 cut(s)	103, 276, 440, 742, 889
BspFNI	CGCG	2 cut(s)	762, 822
BspHI	TCATGA	1 cut(s)	496
BspLI	GGNNCC	2 cut(s)	551, 780
BspMI	ACCTGC	1 cut(s)	369
BspPI	GGATC	2 cut(s)	638, 855
BspQI	GCTCTTC	1 cut(s)	320
BspTNI	GGTCTC	1 cut(s)	907
BsrFI	RCCGGY	1 cut(s)	658
BsrI	ACTGG	4 cut(s)	611, 664, 727, 733
BssAI	RCCGGY	1 cut(s)	658
BssMI	GATC	3 cut(s)	211, 643, 847
BssNI	GRCGYC	1 cut(s)	234
Bst2UI	CCWGG	3 cut(s)	303, 441, 830
Bst4CI	ACNGT	2 cut(s)	549, 676
Bst6I	CTCTTC	1 cut(s)	320
BstACI	GRCGYC	1 cut(s)	234
BstC8I	GCNNGC	3 cut(s)	70, 108, 660
BstDEI	CTNAG	6 cut(s)	73, 90, 284, 427, 750, 876
BstF5I	GGATG	2 cut(s)	474, 512
BstFNI	CGCG	2 cut(s)	762, 822
BstHHI	GCGC	2 cut(s)	146, 201
BstKTI	GATC	3 cut(s)	214, 646, 850
BstMAI	GTCTC	4 cut(s)	375, 405, 879, 907
BstMBI	GATC	3 cut(s)	211, 643, 847
BstMWI	GCNNNNNNNGC	1 cut(s)	423
BstNI	CCWGG	3 cut(s)	303, 441, 830
BstNSI	RCATGY	1 cut(s)	43
BstSCI	CCNGG	3 cut(s)	301, 439, 828
BstUI	CGCG	2 cut(s)	762, 822
BstV2I	GAAGAC	5 cut(s)	485, 693, 702, 717, 810
BstX2I	RGATCY	1 cut(s)	847
BstYI	RGATCY	1 cut(s)	847
BsuRI	GGCC	2 cut(s)	662, 887
BtsCI	GGATG	2 cut(s)	474, 512
BtsI	GCAGTG	1 cut(s)	866
BtsIMutI	CAGTG	2 cut(s)	129, 866
BveI	ACCTGC	1 cut(s)	369
Cac8I	GCNNGC	3 cut(s)	70, 108, 660
CciI	TCATGA	1 cut(s)	496
CfoI	GCGC	2 cut(s)	146, 201
Cfr10I	RCCGGY	1 cut(s)	658
Cfr13I	GGNCC	6 cut(s)	204, 254, 609, 661, 817, 886
CseI	GACGC	2 cut(s)	242, 479
CsiI	ACCWGGT	1 cut(s)	828
Csp6I	GTAC	2 cut(s)	358, 730
CviAII	CATG	6 cut(s)	40, 218, 320, 497, 746, 844
CviQI	GTAC	2 cut(s)	358, 730
DdeI	CTNAG	6 cut(s)	73, 90, 284, 427, 750, 876
DpnI	GATC	3 cut(s)	213, 645, 849
DpnII	GATC	3 cut(s)	211, 643, 847
DraI	TTTAAA	1 cut(s)	538
DrdI	GACNNNNNNGTC	1 cut(s)	227
DseDI	GACNNNNNNGTC	1 cut(s)	227
Eam1104I	CTCTTC	1 cut(s)	320
EarI	CTCTTC	1 cut(s)	320
Eco24I	GRGCYC	1 cut(s)	783
Eco31I	GGTCTC	1 cut(s)	907
Eco47I	GGWCC	4 cut(s)	204, 254, 609, 817
Eco57I	CTGAAG	1 cut(s)	105
EcoRII	CCWGG	3 cut(s)	301, 439, 828
EcoT38I	GRGCYC	1 cut(s)	783
FaeI	CATG	6 cut(s)	43, 221, 323, 500, 749, 847
FaiI	YATR	9 cut(s)	41, 84, 219, 321, 498, 577, 579, 747, 845
FalI	AAGNNNNNCTT	2 cut(s)	103, 135
FaqI	GGGAC	1 cut(s)	62
FatI	CATG	6 cut(s)	39, 217, 319, 496, 745, 843
FauI	CCCGC	2 cut(s)	87, 663
FblI	GTMKAC	1 cut(s)	231
FokI	GGATG	2 cut(s)	481, 499
FriOI	GRGCYC	1 cut(s)	783
GlaI	GCGC	2 cut(s)	145, 200
GsuI	CTGGAG	4 cut(s)	357, 429, 462, 889
HaeIII	GGCC	2 cut(s)	662, 887
HapII	CCGG	3 cut(s)	177, 553, 659
HgaI	GACGC	2 cut(s)	242, 479
HhaI	GCGC	2 cut(s)	146, 201
Hin1I	GRCGYC	1 cut(s)	234
Hin1II	CATG	6 cut(s)	43, 221, 323, 500, 749, 847
Hin6I	GCGC	2 cut(s)	144, 199
HinP1I	GCGC	2 cut(s)	144, 199
HincII	GTYRAC	2 cut(s)	37, 232
HindII	GTYRAC	2 cut(s)	37, 232
HinfI	GANTC	5 cut(s)	116, 368, 431, 564, 911
HpaII	CCGG	3 cut(s)	177, 553, 659
HphI	GGTGA	1 cut(s)	664
Hpy166II	GTNNAC	5 cut(s)	37, 232, 254, 679, 738
Hpy188III	TCNNGA	5 cut(s)	61, 283, 408, 497, 647
Hpy8I	GTNNAC	5 cut(s)	37, 232, 254, 679, 738
Hpy99I	CGWCG	5 cut(s)	67, 233, 236, 695, 767
HpyAV	CCTTC	1 cut(s)	598
HpyCH4III	ACNGT	2 cut(s)	549, 676
HpyCH4V	TGCA	5 cut(s)	110, 353, 448, 472, 524
HpyF10VI	GCNNNNNNNGC	1 cut(s)	423
HpyF3I	CTNAG	6 cut(s)	73, 90, 284, 427, 750, 876
Hsp92I	GRCGYC	1 cut(s)	234
Hsp92II	CATG	6 cut(s)	43, 221, 323, 500, 749, 847
HspAI	GCGC	2 cut(s)	144, 199
KroI	GCCGGC	1 cut(s)	658
KroNI	GCCGGC	1 cut(s)	660
Kzo9I	GATC	3 cut(s)	211, 643, 847
LguI	GCTCTTC	1 cut(s)	320
LmnI	GCTCC	2 cut(s)	9, 778
LweI	GCATC	2 cut(s)	459, 521
MabI	ACCWGGT	1 cut(s)	828
MaeIII	GTNAC	2 cut(s)	670, 880
MalI	GATC	3 cut(s)	213, 645, 849
MboI	GATC	3 cut(s)	211, 643, 847
MflI	RGATCY	1 cut(s)	847
MhlI	GDGCHC	1 cut(s)	783
MluCI	AATT	5 cut(s)	56, 450, 525, 784, 835
MlyI	GAGTC	2 cut(s)	377, 905
MmeI	TCCRAC	3 cut(s)	639, 795, 819
MnlI	CCTC	9 cut(s)	99, 217, 428, 451, 502, 608, 622, 638, 649
MroNI	GCCGGC	1 cut(s)	658
MseI	TTAA	3 cut(s)	453, 464, 537
MspA1I	CMGCKG	1 cut(s)	377
MspI	CCGG	3 cut(s)	177, 553, 659
MspR9I	CCNGG	3 cut(s)	303, 441, 830
MvaI	CCWGG	3 cut(s)	303, 441, 830
MvnI	CGCG	2 cut(s)	762, 822
MwoI	GCNNNNNNNGC	1 cut(s)	423
NaeI	GCCGGC	1 cut(s)	660
NdeII	GATC	3 cut(s)	211, 643, 847
NgoMIV	GCCGGC	1 cut(s)	658
NlaIII	CATG	6 cut(s)	43, 221, 323, 500, 749, 847
NlaIV	GGNNCC	2 cut(s)	551, 780
NmuCI	GTSAC	1 cut(s)	670
NspI	RCATGY	1 cut(s)	43
PagI	TCATGA	1 cut(s)	496
PciI	ACATGT	1 cut(s)	39
PciSI	GCTCTTC	1 cut(s)	320
PcsI	WCGNNNNNNNCGW	2 cut(s)	687, 711
PdiI	GCCGGC	1 cut(s)	660
PfeI	GAWTC	3 cut(s)	116, 431, 564
PflFI	GACNNNGTC	1 cut(s)	767
PflMI	CCANNNNNTGG	1 cut(s)	380
PfoI	TCCNGGA	2 cut(s)	301, 439
PleI	GAGTC	2 cut(s)	376, 905
PpsI	GAGTC	2 cut(s)	376, 905
PscI	ACATGT	1 cut(s)	39
Psp6I	CCWGG	3 cut(s)	301, 439, 828
PspGI	CCWGG	3 cut(s)	301, 439, 828
PspN4I	GGNNCC	2 cut(s)	551, 780
PspPI	GGNCC	6 cut(s)	204, 254, 609, 661, 817, 886
PsuI	RGATCY	1 cut(s)	847
PsyI	GACNNNGTC	1 cut(s)	767
PvuII	CAGCTG	1 cut(s)	377
RsaI	GTAC	2 cut(s)	359, 731
RsaNI	GTAC	2 cut(s)	358, 730
SalI	GTCGAC	1 cut(s)	230
SapI	GCTCTTC	1 cut(s)	320
SaqAI	TTAA	3 cut(s)	453, 464, 537
Sau3AI	GATC	3 cut(s)	211, 643, 847
Sau96I	GGNCC	6 cut(s)	204, 254, 609, 661, 817, 886
SchI	GAGTC	2 cut(s)	377, 905
ScrFI	CCNGG	3 cut(s)	303, 441, 830
SduI	GDGCHC	1 cut(s)	783
SexAI	ACCWGGT	1 cut(s)	828
SfaNI	GCATC	2 cut(s)	459, 521
SgrDI	CGTCGACG	1 cut(s)	230
SinI	GGWCC	4 cut(s)	204, 254, 609, 817
SmlI	CTYRAG	1 cut(s)	506
SmoI	CTYRAG	1 cut(s)	506
Sse9I	AATT	5 cut(s)	56, 450, 525, 784, 835
SsiI	CCGC	5 cut(s)	80, 223, 656, 760, 820
StyD4I	CCNGG	3 cut(s)	301, 439, 828
TaaI	ACNGT	2 cut(s)	549, 676
TaqI	TCGA	3 cut(s)	62, 231, 558
TasI	AATT	5 cut(s)	56, 450, 525, 784, 835
TfiI	GAWTC	3 cut(s)	116, 431, 564
Tru1I	TTAA	3 cut(s)	453, 464, 537
Tru9I	TTAA	3 cut(s)	453, 464, 537
TscAI	CASTG	2 cut(s)	129, 866
TseFI	GTSAC	1 cut(s)	670
Tsp45I	GTSAC	1 cut(s)	670
TspDTI	ATGAA	2 cut(s)	485, 513
TspGWI	ACGGA	1 cut(s)	883
TspRI	CASTG	2 cut(s)	129, 866
Tth111I	GACNNNGTC	1 cut(s)	767
Van91I	CCANNNNNTGG	1 cut(s)	380
VpaK11BI	GGWCC	4 cut(s)	204, 254, 609, 817
XapI	RAATTY	1 cut(s)	56
XceI	RCATGY	1 cut(s)	43
XmiI	GTMKAC	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.