Rorug03G0269100
MYB Family

PHR1-LIKE 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0005519
Physical Location & Seq
Reverse (-)
26463796 .. 26464332
537 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0269100.1

Sequence Viewer

Length: 537 bp
ATGGCAGAAGATAGTGGCAGCAGTAAAGGCAAAGGAGAGTGTAGCAGTACTACAGAAGCTAGTACTTCCTGGCCAGTAAAGATCAGACTCTCAACGGATCAGATGCGTTGGAACAGCCTCAAGATTTCACCCTCAAAGGAATTACAAGAGCAAATTATAGGTAAGATGAGTGAGGCTAGCCGCAAAGCCCTAGATTCGTGGATTCCTGTTGAAATATTCATTTATGATGTTGATACTTGTGAAACTTACAAGGTAGAGCTGGCAAAGAAGAAGTCCTTTTGGTTTGAACCAACTCCTTTTCTTGATGAGAAGAAGAAAGTGTTGAAGGAACAACCTTGTTCTGATCTGAAGAAGGCAAGGGAAGAGTTTGCTTATTCCATCGAGCCTTTTCGACAAATTGTGATGAAAAGGAATCTTAGCTATGGCCAAGAGATTGGCTTGAGATGGTCAGGTGGCAAATACATAGACAAACTTGAGTTTTCAGTTTTGTATGTACCCAGACGCGATCGGCTGGACTTGCAAACCTTAAGAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

178

Amino Acids

20.67

Weight (kDa)

8.86

Isoelectric Point (pI)

59.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 504
AciI CCGC 1 cut(s) 181
AclWI GGATC 1 cut(s) 105
AcoI YGGCCR 2 cut(s) 71, 424
AcsI RAATTY 1 cut(s) 531
AcuI CTGAAG 1 cut(s) 368
AfaI GTAC 3 cut(s) 49, 64, 495
AflII CTTAAG 1 cut(s) 526
AgsI TTSAA 3 cut(s) 212, 287, 325
AjnI CCWGG 1 cut(s) 68
AluBI AGCT 3 cut(s) 59, 259, 420
AluI AGCT 3 cut(s) 59, 259, 420
AlwI GGATC 1 cut(s) 105
AoxI GGCC 2 cut(s) 71, 424
ApeKI GCWGC 1 cut(s) 18
ApoI RAATTY 1 cut(s) 531
ArsI GACNNNNNNTTYG 2 cut(s) 257, 289
AsuHPI GGTGA 1 cut(s) 120
AsuNHI GCTAGC 1 cut(s) 176
BalI TGGCCA 2 cut(s) 73, 426
BbvI GCAGC 1 cut(s) 30
BccI CCATC 2 cut(s) 386, 438
BciT130I CCWGG 1 cut(s) 70
BfaI CTAG 3 cut(s) 60, 177, 191
BfmI CTRYAG 1 cut(s) 51
BfrI CTTAAG 1 cut(s) 526
BisI GCNGC 2 cut(s) 19, 181
BlsI GCNGC 2 cut(s) 20, 182
BmcAI AGTACT 2 cut(s) 49, 64
Bme1390I CCNGG 1 cut(s) 70
BmrFI CCNGG 1 cut(s) 70
BmsI GCATC 1 cut(s) 93
BmtI GCTAGC 1 cut(s) 180
BpuEI CTTGAG 3 cut(s) 104, 460, 494
Bse1I ACTGG 1 cut(s) 74
BseBI CCWGG 1 cut(s) 70
BseNI ACTGG 1 cut(s) 74
BseXI GCAGC 1 cut(s) 30
Bsh1236I CGCG 1 cut(s) 504
Bsh1285I CGRYCG 1 cut(s) 508
BshFI GGCC 2 cut(s) 73, 426
BsiEI CGRYCG 1 cut(s) 508
BsnI GGCC 2 cut(s) 73, 426
Bsp143I GATC 4 cut(s) 81, 97, 343, 505
BspACI CCGC 1 cut(s) 181
BspANI GGCC 2 cut(s) 73, 426
BspFNI CGCG 1 cut(s) 504
BspOI GCTAGC 1 cut(s) 180
BspPI GGATC 1 cut(s) 105
BspTI CTTAAG 1 cut(s) 526
BsrI ACTGG 1 cut(s) 74
BssMI GATC 4 cut(s) 81, 97, 343, 505
Bst2UI CCWGG 1 cut(s) 70
Bst6I CTCTTC 1 cut(s) 357
BstAFI CTTAAG 1 cut(s) 526
BstC8I GCNNGC 2 cut(s) 178, 261
BstDEI CTNAG 1 cut(s) 416
BstFNI CGCG 1 cut(s) 504
BstKTI GATC 4 cut(s) 84, 100, 346, 508
BstMBI GATC 4 cut(s) 81, 97, 343, 505
BstMCI CGRYCG 1 cut(s) 508
BstMWI GCNNNNNNNGC 2 cut(s) 27, 517
BstNI CCWGG 1 cut(s) 70
BstSCI CCNGG 1 cut(s) 68
BstSFI CTRYAG 1 cut(s) 51
BstUI CGCG 1 cut(s) 504
BstV1I GCAGC 1 cut(s) 30
BstXI CCANNNNNNTGG 1 cut(s) 434
BsuRI GGCC 2 cut(s) 73, 426
Cac8I GCNNGC 2 cut(s) 178, 261
CseI GACGC 1 cut(s) 510
Csp6I GTAC 3 cut(s) 48, 63, 494
CviQI GTAC 3 cut(s) 48, 63, 494
DdeI CTNAG 1 cut(s) 416
DpnI GATC 4 cut(s) 83, 99, 345, 507
DpnII GATC 4 cut(s) 81, 97, 343, 505
EaeI YGGCCR 2 cut(s) 71, 424
Eam1104I CTCTTC 1 cut(s) 357
EarI CTCTTC 1 cut(s) 357
Eco57I CTGAAG 1 cut(s) 368
EcoRII CCWGG 1 cut(s) 68
FaiI YATR 5 cut(s) 158, 225, 423, 464, 492
FalI AAGNNNNNCTT 2 cut(s) 260, 292
Fnu4HI GCNGC 2 cut(s) 19, 181
Fsp4HI GCNGC 2 cut(s) 19, 181
FspBI CTAG 3 cut(s) 60, 177, 191
GluI GCNGC 2 cut(s) 19, 181
HaeIII GGCC 2 cut(s) 73, 426
HgaI GACGC 1 cut(s) 510
HinfI GANTC 4 cut(s) 87, 194, 202, 412
HphI GGTGA 1 cut(s) 120
Hpy188I TCNGA 4 cut(s) 86, 102, 343, 348
Hpy188III TCNNGA 2 cut(s) 121, 302
HpyAV CCTTC 2 cut(s) 319, 346
HpyCH4V TGCA 1 cut(s) 520
HpyF10VI GCNNNNNNNGC 2 cut(s) 27, 517
HpyF3I CTNAG 1 cut(s) 416
Kzo9I GATC 4 cut(s) 81, 97, 343, 505
LpnPI CCDG 8 cut(s) 55, 82, 87, 219, 245, 435, 497, 511
Lsp1109I GCAGC 1 cut(s) 30
LweI GCATC 1 cut(s) 93
MaeI CTAG 3 cut(s) 60, 177, 191
MalI GATC 4 cut(s) 83, 99, 345, 507
MboI GATC 4 cut(s) 81, 97, 343, 505
MboII GAAGA 6 cut(s) 20, 280, 322, 325, 361, 374
MlsI TGGCCA 2 cut(s) 73, 426
MluCI AATT 4 cut(s) 140, 153, 396, 531
MluNI TGGCCA 2 cut(s) 73, 426
MlyI GAGTC 1 cut(s) 81
MmeI TCCRAC 1 cut(s) 89
MnlI CCTC 3 cut(s) 128, 142, 166
Mox20I TGGCCA 2 cut(s) 73, 426
MscI TGGCCA 2 cut(s) 73, 426
MseI TTAA 2 cut(s) 527, 535
Msp20I TGGCCA 2 cut(s) 73, 426
MspCI CTTAAG 1 cut(s) 526
MspR9I CCNGG 1 cut(s) 70
MvaI CCWGG 1 cut(s) 70
MvnI CGCG 1 cut(s) 504
MwoI GCNNNNNNNGC 2 cut(s) 27, 517
NdeII GATC 4 cut(s) 81, 97, 343, 505
NheI GCTAGC 1 cut(s) 176
PfeI GAWTC 3 cut(s) 194, 202, 412
PkrI GCNGC 2 cut(s) 20, 182
Ple19I CGATCG 1 cut(s) 508
PleI GAGTC 1 cut(s) 81
PpsI GAGTC 1 cut(s) 81
Psp6I CCWGG 1 cut(s) 68
PspGI CCWGG 1 cut(s) 68
PvuI CGATCG 1 cut(s) 508
RsaI GTAC 3 cut(s) 49, 64, 495
RsaNI GTAC 3 cut(s) 48, 63, 494
SaqAI TTAA 2 cut(s) 527, 535
SatI GCNGC 2 cut(s) 19, 181
Sau3AI GATC 4 cut(s) 81, 97, 343, 505
ScaI AGTACT 2 cut(s) 49, 64
SchI GAGTC 1 cut(s) 81
ScrFI CCNGG 1 cut(s) 70
SetI ASST 8 cut(s) 61, 163, 255, 261, 337, 422, 454, 527
SfaNI GCATC 1 cut(s) 93
SfcI CTRYAG 1 cut(s) 51
SmlI CTYRAG 4 cut(s) 119, 439, 473, 526
SmoI CTYRAG 4 cut(s) 119, 439, 473, 526
Sse9I AATT 4 cut(s) 140, 153, 396, 531
SsiI CCGC 1 cut(s) 181
SspI AATATT 1 cut(s) 216
SspMI CTAG 3 cut(s) 60, 177, 191
StyD4I CCNGG 1 cut(s) 68
TaqI TCGA 2 cut(s) 381, 391
TasI AATT 4 cut(s) 140, 153, 396, 531
TatI WGTACW 2 cut(s) 47, 62
TauI GCSGC 1 cut(s) 183
TfiI GAWTC 3 cut(s) 194, 202, 412
Tru1I TTAA 2 cut(s) 527, 535
Tru9I TTAA 2 cut(s) 527, 535
TseI GCWGC 1 cut(s) 18
TspDTI ATGAA 2 cut(s) 208, 419
TspGWI ACGGA 1 cut(s) 110
Vha464I CTTAAG 1 cut(s) 526
XapI RAATTY 1 cut(s) 531
XspI CTAG 3 cut(s) 60, 177, 191
ZrmI AGTACT 2 cut(s) 49, 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.