Rroxscaffold_6G00390840
MYB Family

PHR1-LIKE 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0005519
Physical Location & Seq
Forward (+)
6696407 .. 6706440
10034 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00390840.1

Sequence Viewer

Length: 981 bp
ATGTATCACGCCAAGAAATTCTCGACGGCGAGCTTGGTCCCGCATAAACCTCAGACTTCTGAACAGCTTGCAAGTGATTCTTCAGTGAAAAACCCGACCCCTTGCGCTTCGGCTTCTGCTTCTGCTTCTGCCGGAAATGGAAAACAACGACTGCGCTGGACCTCCGATCTCCACGACCGCTTCGTCGACGCCATCACACAACTTGGTGGACCAGATAGGGCAACACCTAAAGGTGTCCTGAGAGTGATGGGTGTTCCTGGACTAACTATTTATCATGTGAAGAGCCATTTACAGAAGTATCGTCTTGCAAAGTACCTGCCAGAGTCTCCGGCTGATGGTTCTAAAGACGAGAAGAAAGGTTCTGGAGACAGCCTCTCTTGCTCAGATTCTTCTCCTGGAGTGCAAATTAATGAGGCATTAAGGATGCAGATGGAAGTTCAGAAGCGTCTTCATGAACAACTTGAGATGAAAGCTCATAACATATCATCAAAGCTTGTAATGGATTGTACTCATGTGTTCCTTTCACTGGCTTTTTCATTACCTTTTGGTTCTGTCATGAATACACGTGTTCAAAGACAACTACAAATGAGAATAGAGGCTCAGGGAAAGTACTTGCAGAAGATCATTGAGGAGCAACAGAAATTTGGTGGCGTCCTCAAAGGGTCTGATGCGTTACCATCATCTGAGGATAAGCAAAAGCTATCCCAGTTGGAGGCACCTGGTGATGCATCTACTGGGTTGTCATCTCCTCGAAAGAAACACAGGATGGATGATGGGTTGCCGAGTGATTGCACCACGTCTGATCTGCCTCCAAAAGGTGACCAAAAGAATGAATTTGTCGGTCAGTGGGATCGGGACATGTACCCTAGTGATGGTGGATTTGGTTTCAACTTGCAAACAGAGTTGAAAGAGGCAGAAGGTGGTGGTGCTACACAGAAGGGGCCTCTGGATCTACGTCCCTTGTGTGATTCAGAACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

326

Amino Acids

35.63

Weight (kDa)

8.17

Isoelectric Point (pI)

52.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 50 - 101 1.3e-07 Myb-like DNA-binding domain
Myb_CC_LHEQLE PF14379 134 - 158 2.4e-10 MYB-CC type transfactor, LHEQLE motif
Myb_CC_LHEQLE PF14379 190 - 214 2.9e-09 MYB-CC type transfactor, LHEQLE motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 182
Acc36I ACCTGC 1 cut(s) 324
AccB1I GGYRCC 1 cut(s) 715
AccI GTMKAC 1 cut(s) 186
AciI CCGC 2 cut(s) 41, 178
AclWI GGATC 2 cut(s) 858, 957
AcsI RAATTY 3 cut(s) 17, 641, 833
AcuI CTGAAG 1 cut(s) 66
AcvI CACGTG 1 cut(s) 566
AcyI GRCGYC 2 cut(s) 189, 651
AdeI CACNNNGTG 1 cut(s) 722
AfaI GTAC 4 cut(s) 314, 508, 611, 863
AfiI CCNNNNNNNGG 5 cut(s) 335, 526, 712, 815, 872
AflIII ACRYGT 3 cut(s) 563, 565, 858
AgsI TTSAA 3 cut(s) 572, 889, 907
AjiI CACGTC 1 cut(s) 798
AjnI CCWGG 3 cut(s) 256, 394, 718
AluBI AGCT 5 cut(s) 33, 67, 473, 493, 700
AluI AGCT 5 cut(s) 33, 67, 473, 493, 700
Alw26I GTCTC 2 cut(s) 330, 360
AlwI GGATC 2 cut(s) 858, 957
AoxI GGCC 1 cut(s) 941
ApoI RAATTY 3 cut(s) 17, 641, 833
AseI ATTAAT 1 cut(s) 408
AspLEI GCGC 2 cut(s) 107, 156
AspS9I GGNCC 4 cut(s) 37, 159, 209, 941
AsuHPI GGTGA 2 cut(s) 734, 830
AvaII GGWCC 3 cut(s) 37, 159, 209
BaeI ACNNNNGTAYC 2 cut(s) 281, 314
BanI GGYRCC 1 cut(s) 715
BbrPI CACGTG 1 cut(s) 566
BbsI GAAGAC 1 cut(s) 440
BccI CCATC 8 cut(s) 200, 241, 329, 424, 685, 760, 767, 866
BceAI ACGGC 1 cut(s) 42
BciT130I CCWGG 3 cut(s) 258, 396, 720
BcoDI GTCTC 2 cut(s) 330, 360
BfaI CTAG 1 cut(s) 867
BfuAI ACCTGC 1 cut(s) 324
BmcAI AGTACT 1 cut(s) 611
Bme1390I CCNGG 3 cut(s) 258, 396, 720
Bme18I GGWCC 3 cut(s) 37, 159, 209
BmgBI CACGTC 1 cut(s) 798
BmgT120I GGNCC 4 cut(s) 37, 159, 209, 941
BmiI GGNNCC 3 cut(s) 39, 717, 942
BmrFI CCNGG 3 cut(s) 258, 396, 720
BmrI ACTGGG 2 cut(s) 700, 744
BmsI GCATC 4 cut(s) 414, 658, 715, 737
BmuI ACTGGG 2 cut(s) 700, 744
BpiI GAAGAC 1 cut(s) 440
BplI GAGNNNNNCTC 2 cut(s) 357, 389
BpmI CTGGAG 2 cut(s) 384, 417
Bpu10I CCTNAGC 1 cut(s) 600
BpuEI CTTGAG 1 cut(s) 482
BsaAI YACGTR 1 cut(s) 566
BsaHI GRCGYC 2 cut(s) 189, 651
Bsc4I CCNNNNNNNGG 5 cut(s) 335, 526, 712, 815, 872
Bse1I ACTGG 3 cut(s) 531, 706, 739
BseBI CCWGG 3 cut(s) 258, 396, 720
BseGI GGATG 3 cut(s) 429, 771, 775
BseLI CCNNNNNNNGG 5 cut(s) 335, 526, 712, 815, 872
BseMII CTCAG 5 cut(s) 65, 230, 396, 614, 675
BseNI ACTGG 3 cut(s) 531, 706, 739
BseRI GAGGAG 2 cut(s) 644, 738
Bsh1285I CGRYCG 1 cut(s) 178
BshFI GGCC 1 cut(s) 943
BshNI GGYRCC 1 cut(s) 715
BsiEI CGRYCG 1 cut(s) 178
BsiSI CCGG 2 cut(s) 132, 329
BslFI GGGAC 3 cut(s) 23, 869, 942
BslI CCNNNNNNNGG 5 cut(s) 335, 526, 712, 815, 872
BsmAI GTCTC 2 cut(s) 330, 360
BsmFI GGGAC 3 cut(s) 23, 869, 942
BsnI GGCC 1 cut(s) 943
Bsp143I GATC 5 cut(s) 166, 621, 802, 850, 949
BspACI CCGC 2 cut(s) 41, 178
BspANI GGCC 1 cut(s) 943
BspCNI CTCAG 5 cut(s) 64, 231, 395, 613, 676
BspHI TCATGA 2 cut(s) 451, 555
BspLI GGNNCC 3 cut(s) 39, 717, 942
BspMI ACCTGC 1 cut(s) 324
BspPI GGATC 2 cut(s) 858, 957
BspQI GCTCTTC 1 cut(s) 275
BspT107I GGYRCC 1 cut(s) 715
BsrI ACTGG 3 cut(s) 531, 706, 739
BssMI GATC 5 cut(s) 166, 621, 802, 850, 949
BssNI GRCGYC 2 cut(s) 189, 651
Bst2UI CCWGG 3 cut(s) 258, 396, 720
Bst6I CTCTTC 1 cut(s) 275
BstACI GRCGYC 2 cut(s) 189, 651
BstBAI YACGTR 1 cut(s) 566
BstC8I GCNNGC 2 cut(s) 31, 69
BstDEI CTNAG 5 cut(s) 51, 239, 382, 600, 684
BstEII GGTNACC 1 cut(s) 818
BstENI CCTNNNNNAGG 1 cut(s) 813
BstF5I GGATG 3 cut(s) 429, 771, 775
BstHHI GCGC 2 cut(s) 107, 156
BstKTI GATC 5 cut(s) 169, 624, 805, 853, 952
BstMAI GTCTC 2 cut(s) 330, 360
BstMBI GATC 5 cut(s) 166, 621, 802, 850, 949
BstMCI CGRYCG 1 cut(s) 178
BstMWI GCNNNNNNNGC 1 cut(s) 378
BstNI CCWGG 3 cut(s) 258, 396, 720
BstNSI RCATGY 1 cut(s) 862
BstPI GGTNACC 1 cut(s) 818
BstSCI CCNGG 3 cut(s) 256, 394, 718
BstV2I GAAGAC 1 cut(s) 440
BstX2I RGATCY 1 cut(s) 949
BstYI RGATCY 1 cut(s) 949
BsuRI GGCC 1 cut(s) 943
BtrI CACGTC 1 cut(s) 798
BtsCI GGATG 3 cut(s) 429, 771, 775
BtsIMutI CAGTG 3 cut(s) 90, 524, 851
BveI ACCTGC 1 cut(s) 324
Cac8I GCNNGC 2 cut(s) 31, 69
CciI TCATGA 2 cut(s) 451, 555
CfoI GCGC 2 cut(s) 107, 156
Cfr13I GGNCC 4 cut(s) 37, 159, 209, 941
CseI GACGC 3 cut(s) 197, 434, 640
CsiI ACCWGGT 1 cut(s) 718
Csp6I GTAC 4 cut(s) 313, 507, 610, 862
CviAII CATG 5 cut(s) 275, 452, 512, 556, 859
CviQI GTAC 4 cut(s) 313, 507, 610, 862
DdeI CTNAG 5 cut(s) 51, 239, 382, 600, 684
DpnI GATC 5 cut(s) 168, 623, 804, 852, 951
DpnII GATC 5 cut(s) 166, 621, 802, 850, 949
DraIII CACNNNGTG 1 cut(s) 722
DrdI GACNNNNNNGTC 1 cut(s) 182
DseDI GACNNNNNNGTC 1 cut(s) 182
Eam1104I CTCTTC 1 cut(s) 275
EarI CTCTTC 1 cut(s) 275
Eco47I GGWCC 3 cut(s) 37, 159, 209
Eco57I CTGAAG 1 cut(s) 66
Eco72I CACGTG 1 cut(s) 566
Eco91I GGTNACC 1 cut(s) 818
EcoNI CCTNNNNNAGG 1 cut(s) 813
EcoO109I RGGNCCY 1 cut(s) 941
EcoO65I GGTNACC 1 cut(s) 818
EcoRII CCWGG 3 cut(s) 256, 394, 718
EcoT22I ATGCAT 1 cut(s) 730
FaeI CATG 5 cut(s) 278, 455, 515, 559, 862
FaiI YATR 8 cut(s) 45, 276, 453, 477, 482, 513, 557, 860
FalI AAGNNNNNCTT 2 cut(s) 64, 96
FaqI GGGAC 3 cut(s) 23, 869, 942
FatI CATG 5 cut(s) 274, 451, 511, 555, 858
FauI CCCGC 1 cut(s) 48
FblI GTMKAC 1 cut(s) 186
FokI GGATG 3 cut(s) 436, 778, 782
FspBI CTAG 1 cut(s) 867
GlaI GCGC 2 cut(s) 106, 155
GsuI CTGGAG 2 cut(s) 384, 417
HaeIII GGCC 1 cut(s) 943
HapII CCGG 2 cut(s) 132, 329
HgaI GACGC 3 cut(s) 197, 434, 640
HhaI GCGC 2 cut(s) 107, 156
Hin1I GRCGYC 2 cut(s) 189, 651
Hin1II CATG 5 cut(s) 278, 455, 515, 559, 862
Hin6I GCGC 2 cut(s) 105, 154
HinP1I GCGC 2 cut(s) 105, 154
HincII GTYRAC 1 cut(s) 187
HindII GTYRAC 1 cut(s) 187
HindIII AAGCTT 1 cut(s) 491
HinfI GANTC 4 cut(s) 77, 323, 386, 968
HpaII CCGG 2 cut(s) 132, 329
HphI GGTGA 2 cut(s) 734, 830
Hpy166II GTNNAC 2 cut(s) 187, 209
Hpy188I TCNGA 9 cut(s) 54, 61, 166, 385, 441, 667, 685, 802, 973
Hpy188III TCNNGA 7 cut(s) 22, 238, 363, 452, 556, 854, 947
Hpy8I GTNNAC 2 cut(s) 187, 209
Hpy99I CGWCG 3 cut(s) 28, 188, 191
HpyAV CCTTC 2 cut(s) 911, 931
HpyCH4IV ACGT 3 cut(s) 565, 797, 955
HpyCH4V TGCA 8 cut(s) 71, 308, 403, 427, 616, 728, 792, 895
HpyF10VI GCNNNNNNNGC 1 cut(s) 378
HpyF3I CTNAG 5 cut(s) 51, 239, 382, 600, 684
HpySE526I ACGT 3 cut(s) 565, 797, 955
Hsp92I GRCGYC 2 cut(s) 189, 651
Hsp92II CATG 5 cut(s) 278, 455, 515, 559, 862
HspAI GCGC 2 cut(s) 105, 154
Kzo9I GATC 5 cut(s) 166, 621, 802, 850, 949
LguI GCTCTTC 1 cut(s) 275
LmnI GCTCC 1 cut(s) 631
LweI GCATC 4 cut(s) 414, 658, 715, 737
MabI ACCWGGT 1 cut(s) 718
MaeI CTAG 1 cut(s) 867
MaeII ACGT 3 cut(s) 565, 797, 955
MaeIII GTNAC 2 cut(s) 672, 818
MalI GATC 5 cut(s) 168, 623, 804, 852, 951
MboI GATC 5 cut(s) 166, 621, 802, 850, 949
MboII GAAGA 6 cut(s) 72, 292, 364, 381, 440, 631
MflI RGATCY 1 cut(s) 949
MluCI AATT 4 cut(s) 17, 405, 641, 833
MlyI GAGTC 1 cut(s) 332
MmeI TCCRAC 1 cut(s) 690
Mph1103I ATGCAT 1 cut(s) 730
MseI TTAA 2 cut(s) 408, 419
MspI CCGG 2 cut(s) 132, 329
MspR9I CCNGG 3 cut(s) 258, 396, 720
MvaI CCWGG 3 cut(s) 258, 396, 720
MwoI GCNNNNNNNGC 1 cut(s) 378
NdeII GATC 5 cut(s) 166, 621, 802, 850, 949
NlaIII CATG 5 cut(s) 278, 455, 515, 559, 862
NlaIV GGNNCC 3 cut(s) 39, 717, 942
NmeAIII GCCGAG 1 cut(s) 807
NmuCI GTSAC 1 cut(s) 818
NsiI ATGCAT 1 cut(s) 730
NspI RCATGY 1 cut(s) 862
PagI TCATGA 2 cut(s) 451, 555
PciI ACATGT 1 cut(s) 858
PciSI GCTCTTC 1 cut(s) 275
PcsI WCGNNNNNNNCGW 1 cut(s) 180
PfeI GAWTC 3 cut(s) 77, 386, 968
PfoI TCCNGGA 2 cut(s) 256, 394
PleI GAGTC 1 cut(s) 331
PmaCI CACGTG 1 cut(s) 566
PmlI CACGTG 1 cut(s) 566
PpsI GAGTC 1 cut(s) 331
Ppu21I YACGTR 1 cut(s) 566
PscI ACATGT 1 cut(s) 858
PshBI ATTAAT 1 cut(s) 408
Psp6I CCWGG 3 cut(s) 256, 394, 718
PspCI CACGTG 1 cut(s) 566
PspEI GGTNACC 1 cut(s) 818
PspGI CCWGG 3 cut(s) 256, 394, 718
PspN4I GGNNCC 3 cut(s) 39, 717, 942
PspPI GGNCC 4 cut(s) 37, 159, 209, 941
PsuI RGATCY 1 cut(s) 949
RsaI GTAC 4 cut(s) 314, 508, 611, 863
RsaNI GTAC 4 cut(s) 313, 507, 610, 862
SalI GTCGAC 1 cut(s) 185
SapI GCTCTTC 1 cut(s) 275
SaqAI TTAA 2 cut(s) 408, 419
Sau3AI GATC 5 cut(s) 166, 621, 802, 850, 949
Sau96I GGNCC 4 cut(s) 37, 159, 209, 941
ScaI AGTACT 1 cut(s) 611
SchI GAGTC 1 cut(s) 332
ScrFI CCNGG 3 cut(s) 258, 396, 720
SexAI ACCWGGT 1 cut(s) 718
SfaNI GCATC 4 cut(s) 414, 658, 715, 737
SgrDI CGTCGACG 1 cut(s) 185
SinI GGWCC 3 cut(s) 37, 159, 209
SmlI CTYRAG 1 cut(s) 461
SmoI CTYRAG 1 cut(s) 461
Sse9I AATT 4 cut(s) 17, 405, 641, 833
SsiI CCGC 2 cut(s) 41, 178
SspMI CTAG 1 cut(s) 867
StyD4I CCNGG 3 cut(s) 256, 394, 718
TaiI ACGT 3 cut(s) 568, 800, 958
TaqI TCGA 3 cut(s) 23, 186, 751
TaqII GACCGA 1 cut(s) 830
TasI AATT 4 cut(s) 17, 405, 641, 833
TatI WGTACW 2 cut(s) 506, 609
TfiI GAWTC 3 cut(s) 77, 386, 968
Tru1I TTAA 2 cut(s) 408, 419
Tru9I TTAA 2 cut(s) 408, 419
TscAI CASTG 3 cut(s) 90, 531, 851
TseFI GTSAC 1 cut(s) 818
Tsp45I GTSAC 1 cut(s) 818
TspDTI ATGAA 6 cut(s) 440, 468, 482, 525, 572, 846
TspRI CASTG 3 cut(s) 90, 531, 851
VpaK11BI GGWCC 3 cut(s) 37, 159, 209
VspI ATTAAT 1 cut(s) 408
XagI CCTNNNNNAGG 1 cut(s) 813
XapI RAATTY 3 cut(s) 17, 641, 833
XceI RCATGY 1 cut(s) 862
XmiI GTMKAC 1 cut(s) 186
XspI CTAG 1 cut(s) 867
ZrmI AGTACT 1 cut(s) 611
Zsp2I ATGCAT 1 cut(s) 730
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.