Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005519

Physical Location & Seq

Genomic Coordinates Reverse (-)

44308636 .. 44316267

Gene Structure 7632 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45749

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGTATCACGCCAAGAAATTCTCGACGGCGAGCTTAGTCCCGCATAAACCTCAGACTTCTGAACAGCTTGCAAGTGATTCTTCAGTGAAAAACCCGACCCCTTGCGCTTCGGCTTCGGCTTCTGCTTCTGCTTCTGCCGGAAATGGAAAACAACGACTGCGCTGGACCTCCGATCTCCATGACCGCTTCGTCGACGCCATCACACAACTTGGTGGACCAGATAGGGCAACACCTAAGGGTGTCCTGAGAGTGATGGGTGTTCCTGGACTAACTATTTATCATGTGAAGAGCCATTTACAGAAGTATCGTCTTGCAAAGTACCTGCCAGAGTCTCCAGCTGATGGTTCTAAAGATGAGAAGAAGGGTTCTGGAGACAGCCTCTCTTGCTCAGATTCTTCTCCTGGAGTGCAAATTAACGAGGCGTTAAGGATGCAGATGGAAGTTCAGAAGCGTCTTCATGAACAACTTGAGGTTCAAAGACAACTACAAATGAGAATAGAGGCTCAGGGAAAGTACTTGCAGAAGATCATTGAGGAGCAACAGAAACTTGGTGGCGTCCTCAAAGGGTCTGATGCATTACCATCATCTGAGGATAAGCAAAAGCTATCCCAGTTGGAGACACCTGGTGATGCATCTACGGGGTTGTCATCTCCCCGAAAGAAACACAGGATGGATGATGGGTTACCGAGTGATTGCACCACGTCTGATCTGCCTCCAAAAGGTGACCAAAAGAATGAATTTGTTGGTCAGTGGGATCGGGACATGTACCCTAGTGATGGTGGATTTGGTTTCAACTTGCAAACAGAGTTGAAAGAGGCAGAAGGTGGTGGTGCTACACAGAAAGGGCCTCTGGAGCTACGTCCCTTGTGTGATTCAGAACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

294

Amino Acids

32.03

Weight (kDa)

7.05

Isoelectric Point (pI)

51.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	52 - 103	1.1e-07	Myb-like DNA-binding domain
Myb_CC_LHEQLE	PF14379	136 - 182	1.7e-24	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005519)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29370 FvH4_1g29370 FvH4_1g29370 FvH4_1g29370
malus_domestica	MD12G1111000.v1.1 MD14G1091900.v1.1
prunus_persica	Prupe.7G023300_v2.0.a1 Prupe.7G023300_v2.0.a1 Prupe.7G023300_v2.0.a1 Prupe.7G023300_v2.0.a1 Prupe.7G023300_v2.0.a1 Prupe.7G023300_v2.0.a1 Prupe.7G023300_v2.0.a1 Prupe.7G023300_v2.0.a1
pyrus_communis	pycom12g09310 pycom14g08990
rosa_chinensis	RchiOBHm_Chr3g0495021
rosa_laevigata	RLG00000022655
rosa_multiflora	Rmu_ssc0000058.1_g000002 Rmu_ssc0000058.1_g000009
rosa_roxburghii	Rroxscaffold_6G00390840
rosa_rugosa	Rorug03G0269100 Rorug03G0269200
rosa_samantha	Rh3AG318300 Rh3BG353300 Rh3BG353400 Rh3CG350200 Rh3DG352700
rosa_wichuraiana	Rw3G027750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	188
Acc36I	ACCTGC	1 cut(s)	330
AccB7I	CCANNNNNTGG	1 cut(s)	341
AccI	GTMKAC	1 cut(s)	192
AciI	CCGC	2 cut(s)	41, 184
AclWI	GGATC	1 cut(s)	762
AcsI	RAATTY	2 cut(s)	17, 737
AcuI	CTGAAG	1 cut(s)	66
AcyI	GRCGYC	2 cut(s)	195, 555
AdeI	CACNNNGTG	1 cut(s)	626
AfaI	GTAC	3 cut(s)	320, 515, 767
AfiI	CCNNNNNNNGG	3 cut(s)	341, 719, 776
AflIII	ACRYGT	1 cut(s)	762
AgsI	TTSAA	3 cut(s)	476, 793, 811
AjiI	CACGTC	1 cut(s)	702
AjnI	CCWGG	3 cut(s)	262, 400, 622
AluBI	AGCT	5 cut(s)	33, 67, 338, 604, 856
AluI	AGCT	5 cut(s)	33, 67, 338, 604, 856
Alw26I	GTCTC	3 cut(s)	336, 366, 611
AlwI	GGATC	1 cut(s)	762
AoxI	GGCC	1 cut(s)	845
ApoI	RAATTY	2 cut(s)	17, 737
AspLEI	GCGC	2 cut(s)	107, 162
AspS9I	GGNCC	3 cut(s)	165, 215, 845
AsuHPI	GGTGA	2 cut(s)	638, 734
AvaII	GGWCC	2 cut(s)	165, 215
AxyI	CCTNAGG	1 cut(s)	234
BaeI	ACNNNNGTAYC	2 cut(s)	287, 320
BbsI	GAAGAC	1 cut(s)	446
BccI	CCATC	8 cut(s)	206, 247, 335, 430, 589, 664, 671, 770
BceAI	ACGGC	1 cut(s)	42
BciT130I	CCWGG	3 cut(s)	264, 402, 624
BcoDI	GTCTC	3 cut(s)	336, 366, 611
BfaI	CTAG	1 cut(s)	771
BfuAI	ACCTGC	1 cut(s)	330
BmcAI	AGTACT	1 cut(s)	515
Bme1390I	CCNGG	3 cut(s)	264, 402, 624
Bme18I	GGWCC	2 cut(s)	165, 215
BmgBI	CACGTC	1 cut(s)	702
BmgT120I	GGNCC	3 cut(s)	165, 215, 845
BmrFI	CCNGG	3 cut(s)	264, 402, 624
BmrI	ACTGGG	1 cut(s)	604
BmsI	GCATC	4 cut(s)	420, 562, 619, 641
BmuI	ACTGGG	1 cut(s)	604
BpiI	GAAGAC	1 cut(s)	446
BplI	GAGNNNNNCTC	2 cut(s)	363, 395
BpmI	CTGGAG	4 cut(s)	318, 390, 423, 872
Bpu10I	CCTNAGC	1 cut(s)	504
BpuEI	CTTGAG	1 cut(s)	488
BsaHI	GRCGYC	2 cut(s)	195, 555
Bsc4I	CCNNNNNNNGG	3 cut(s)	341, 719, 776
Bse1I	ACTGG	1 cut(s)	610
Bse21I	CCTNAGG	1 cut(s)	234
BseBI	CCWGG	3 cut(s)	264, 402, 624
BseGI	GGATG	3 cut(s)	435, 675, 679
BseLI	CCNNNNNNNGG	3 cut(s)	341, 719, 776
BseMII	CTCAG	5 cut(s)	65, 236, 402, 518, 579
BseNI	ACTGG	1 cut(s)	610
BseRI	GAGGAG	1 cut(s)	548
BshFI	GGCC	1 cut(s)	847
BsiSI	CCGG	1 cut(s)	138
BslFI	GGGAC	3 cut(s)	23, 773, 846
BslI	CCNNNNNNNGG	3 cut(s)	341, 719, 776
BsmAI	GTCTC	3 cut(s)	336, 366, 611
BsmFI	GGGAC	3 cut(s)	23, 773, 846
BsnI	GGCC	1 cut(s)	847
Bsp143I	GATC	4 cut(s)	172, 525, 706, 754
BspACI	CCGC	2 cut(s)	41, 184
BspANI	GGCC	1 cut(s)	847
BspCNI	CTCAG	5 cut(s)	64, 237, 401, 517, 580
BspHI	TCATGA	1 cut(s)	457
BspMI	ACCTGC	1 cut(s)	330
BspPI	GGATC	1 cut(s)	762
BspQI	GCTCTTC	1 cut(s)	281
BsrI	ACTGG	1 cut(s)	610
BssMI	GATC	4 cut(s)	172, 525, 706, 754
BssNI	GRCGYC	2 cut(s)	195, 555
Bst2UI	CCWGG	3 cut(s)	264, 402, 624
Bst6I	CTCTTC	1 cut(s)	281
BstACI	GRCGYC	2 cut(s)	195, 555
BstC8I	GCNNGC	2 cut(s)	31, 69
BstDEI	CTNAG	7 cut(s)	34, 51, 234, 245, 388, 504, 588
BstEII	GGTNACC	2 cut(s)	681, 722
BstENI	CCTNNNNNAGG	1 cut(s)	717
BstF5I	GGATG	3 cut(s)	435, 675, 679
BstHHI	GCGC	2 cut(s)	107, 162
BstKTI	GATC	4 cut(s)	175, 528, 709, 757
BstMAI	GTCTC	3 cut(s)	336, 366, 611
BstMBI	GATC	4 cut(s)	172, 525, 706, 754
BstMWI	GCNNNNNNNGC	2 cut(s)	384, 853
BstNI	CCWGG	3 cut(s)	264, 402, 624
BstNSI	RCATGY	1 cut(s)	766
BstPI	GGTNACC	2 cut(s)	681, 722
BstSCI	CCNGG	3 cut(s)	262, 400, 622
BstV2I	GAAGAC	1 cut(s)	446
Bsu36I	CCTNAGG	1 cut(s)	234
BsuRI	GGCC	1 cut(s)	847
BtrI	CACGTC	1 cut(s)	702
BtsCI	GGATG	3 cut(s)	435, 675, 679
BtsIMutI	CAGTG	2 cut(s)	90, 755
BveI	ACCTGC	1 cut(s)	330
Cac8I	GCNNGC	2 cut(s)	31, 69
CciI	TCATGA	1 cut(s)	457
CfoI	GCGC	2 cut(s)	107, 162
Cfr13I	GGNCC	3 cut(s)	165, 215, 845
CseI	GACGC	3 cut(s)	203, 440, 544
CsiI	ACCWGGT	1 cut(s)	622
Csp6I	GTAC	3 cut(s)	319, 514, 766
CviAII	CATG	4 cut(s)	179, 281, 458, 763
CviQI	GTAC	3 cut(s)	319, 514, 766
DdeI	CTNAG	7 cut(s)	34, 51, 234, 245, 388, 504, 588
DpnI	GATC	4 cut(s)	174, 527, 708, 756
DpnII	GATC	4 cut(s)	172, 525, 706, 754
DraIII	CACNNNGTG	1 cut(s)	626
DrdI	GACNNNNNNGTC	1 cut(s)	188
DseDI	GACNNNNNNGTC	1 cut(s)	188
Eam1104I	CTCTTC	1 cut(s)	281
EarI	CTCTTC	1 cut(s)	281
Eco47I	GGWCC	2 cut(s)	165, 215
Eco57I	CTGAAG	1 cut(s)	66
Eco81I	CCTNAGG	1 cut(s)	234
Eco91I	GGTNACC	2 cut(s)	681, 722
EcoNI	CCTNNNNNAGG	1 cut(s)	717
EcoO109I	RGGNCCY	1 cut(s)	845
EcoO65I	GGTNACC	2 cut(s)	681, 722
EcoRII	CCWGG	3 cut(s)	262, 400, 622
EcoT22I	ATGCAT	2 cut(s)	577, 634
FaeI	CATG	4 cut(s)	182, 284, 461, 766
FaiI	YATR	5 cut(s)	45, 180, 282, 459, 764
FalI	AAGNNNNNCTT	2 cut(s)	64, 96
FaqI	GGGAC	3 cut(s)	23, 773, 846
FatI	CATG	4 cut(s)	178, 280, 457, 762
FauI	CCCGC	1 cut(s)	48
FblI	GTMKAC	1 cut(s)	192
FokI	GGATG	3 cut(s)	442, 682, 686
FspBI	CTAG	1 cut(s)	771
GlaI	GCGC	2 cut(s)	106, 161
GsuI	CTGGAG	4 cut(s)	318, 390, 423, 872
HaeIII	GGCC	1 cut(s)	847
HapII	CCGG	1 cut(s)	138
HgaI	GACGC	3 cut(s)	203, 440, 544
HhaI	GCGC	2 cut(s)	107, 162
Hin1I	GRCGYC	2 cut(s)	195, 555
Hin1II	CATG	4 cut(s)	182, 284, 461, 766
Hin6I	GCGC	2 cut(s)	105, 160
HinP1I	GCGC	2 cut(s)	105, 160
HincII	GTYRAC	1 cut(s)	193
HindII	GTYRAC	1 cut(s)	193
HinfI	GANTC	4 cut(s)	77, 329, 392, 872
HpaII	CCGG	1 cut(s)	138
HphI	GGTGA	2 cut(s)	638, 734
Hpy166II	GTNNAC	2 cut(s)	193, 215
Hpy188I	TCNGA	9 cut(s)	54, 61, 172, 391, 447, 571, 589, 706, 877
Hpy188III	TCNNGA	6 cut(s)	22, 244, 369, 458, 758, 851
Hpy8I	GTNNAC	2 cut(s)	193, 215
Hpy99I	CGWCG	3 cut(s)	28, 194, 197
HpyAV	CCTTC	2 cut(s)	355, 815
HpyCH4IV	ACGT	2 cut(s)	701, 859
HpyCH4V	TGCA	9 cut(s)	71, 314, 409, 433, 520, 575, 632, 696, 799
HpyF10VI	GCNNNNNNNGC	2 cut(s)	384, 853
HpyF3I	CTNAG	7 cut(s)	34, 51, 234, 245, 388, 504, 588
HpySE526I	ACGT	2 cut(s)	701, 859
Hsp92I	GRCGYC	2 cut(s)	195, 555
Hsp92II	CATG	4 cut(s)	182, 284, 461, 766
HspAI	GCGC	2 cut(s)	105, 160
Kzo9I	GATC	4 cut(s)	172, 525, 706, 754
LguI	GCTCTTC	1 cut(s)	281
LmnI	GCTCC	2 cut(s)	535, 853
LweI	GCATC	4 cut(s)	420, 562, 619, 641
MabI	ACCWGGT	1 cut(s)	622
MaeI	CTAG	1 cut(s)	771
MaeII	ACGT	2 cut(s)	701, 859
MaeIII	GTNAC	2 cut(s)	681, 722
MalI	GATC	4 cut(s)	174, 527, 708, 756
MboI	GATC	4 cut(s)	172, 525, 706, 754
MboII	GAAGA	6 cut(s)	72, 298, 370, 387, 446, 535
MluCI	AATT	3 cut(s)	17, 411, 737
MlyI	GAGTC	1 cut(s)	338
MmeI	TCCRAC	1 cut(s)	594
Mph1103I	ATGCAT	2 cut(s)	577, 634
MseI	TTAA	2 cut(s)	414, 425
MspA1I	CMGCKG	1 cut(s)	338
MspI	CCGG	1 cut(s)	138
MspR9I	CCNGG	3 cut(s)	264, 402, 624
MvaI	CCWGG	3 cut(s)	264, 402, 624
MwoI	GCNNNNNNNGC	2 cut(s)	384, 853
NdeII	GATC	4 cut(s)	172, 525, 706, 754
NlaIII	CATG	4 cut(s)	182, 284, 461, 766
NmuCI	GTSAC	1 cut(s)	722
NsiI	ATGCAT	2 cut(s)	577, 634
NspI	RCATGY	1 cut(s)	766
PagI	TCATGA	1 cut(s)	457
PciI	ACATGT	1 cut(s)	762
PciSI	GCTCTTC	1 cut(s)	281
PfeI	GAWTC	3 cut(s)	77, 392, 872
PflMI	CCANNNNNTGG	1 cut(s)	341
PfoI	TCCNGGA	2 cut(s)	262, 400
PleI	GAGTC	1 cut(s)	337
PpsI	GAGTC	1 cut(s)	337
PscI	ACATGT	1 cut(s)	762
Psp6I	CCWGG	3 cut(s)	262, 400, 622
PspEI	GGTNACC	2 cut(s)	681, 722
PspGI	CCWGG	3 cut(s)	262, 400, 622
PspPI	GGNCC	3 cut(s)	165, 215, 845
PvuII	CAGCTG	1 cut(s)	338
RsaI	GTAC	3 cut(s)	320, 515, 767
RsaNI	GTAC	3 cut(s)	319, 514, 766
SalI	GTCGAC	1 cut(s)	191
SapI	GCTCTTC	1 cut(s)	281
SaqAI	TTAA	2 cut(s)	414, 425
Sau3AI	GATC	4 cut(s)	172, 525, 706, 754
Sau96I	GGNCC	3 cut(s)	165, 215, 845
ScaI	AGTACT	1 cut(s)	515
SchI	GAGTC	1 cut(s)	338
ScrFI	CCNGG	3 cut(s)	264, 402, 624
SexAI	ACCWGGT	1 cut(s)	622
SfaNI	GCATC	4 cut(s)	420, 562, 619, 641
SgrDI	CGTCGACG	1 cut(s)	191
SinI	GGWCC	2 cut(s)	165, 215
SmlI	CTYRAG	1 cut(s)	467
SmoI	CTYRAG	1 cut(s)	467
Sse9I	AATT	3 cut(s)	17, 411, 737
SsiI	CCGC	2 cut(s)	41, 184
SspMI	CTAG	1 cut(s)	771
StyD4I	CCNGG	3 cut(s)	262, 400, 622
TaiI	ACGT	2 cut(s)	704, 862
TaqI	TCGA	2 cut(s)	23, 192
TasI	AATT	3 cut(s)	17, 411, 737
TatI	WGTACW	1 cut(s)	513
TfiI	GAWTC	3 cut(s)	77, 392, 872
Tru1I	TTAA	2 cut(s)	414, 425
Tru9I	TTAA	2 cut(s)	414, 425
TscAI	CASTG	2 cut(s)	90, 755
TseFI	GTSAC	1 cut(s)	722
Tsp45I	GTSAC	1 cut(s)	722
TspDTI	ATGAA	3 cut(s)	446, 474, 750
TspRI	CASTG	2 cut(s)	90, 755
Van91I	CCANNNNNTGG	1 cut(s)	341
VpaK11BI	GGWCC	2 cut(s)	165, 215
XagI	CCTNNNNNAGG	1 cut(s)	717
XapI	RAATTY	2 cut(s)	17, 737
XceI	RCATGY	1 cut(s)	766
XmiI	GTMKAC	1 cut(s)	192
XspI	CTAG	1 cut(s)	771
ZrmI	AGTACT	1 cut(s)	515
Zsp2I	ATGCAT	2 cut(s)	577, 634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.