RLG00000022655
MYB Family

PHR1-LIKE 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0005519
Physical Location & Seq
Forward (+)
6736121 .. 6746073
9953 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022655

Sequence Viewer

Length: 1050 bp
ATGCTTCATCTAAAATCAAAACACAGAATTAAGGTCGAGATTCATTTTAACAGCTGGTGCGCGTGGAAAAGAAAAAGTCACAGGGTGCGCGTTGTGGTCCCGTTGCCTATTTGGCCGTTAGCTCTCTTGTTTGTTTGTTTGTTTGTTTGTTTAAGTGCTGTCAACATGTATCACGCCAAGAAATTCTCGACGGCGAGCTTAGTCCCACATAAACCTCAGACTTCTGAACAGCTTGCAAGTGATTCTTCAGTGAAAAACCCGACCCCTTGCGCTTCGGCTTCTGCTTCTGCTTCTGCTTCTGCCGGAAATGGAAAACAACGCCTGCGCTGGACTTCCGATCTCCATGACCGCTTCGTCGACGCCATCACACAACTTGGTGGACCAGATAGGGCAACACCTAAAGGTGTCCTGAGAGTGATGGGTGTTCCTGGACTAACTATTTATCATGTGAAGAGCCATTTACAGAAGTATCGTCTTGCAAAGTACCTGCCAGAGTCTCCGGCTGATGGTTCTAAAGACGAGAAGAAAGGTTCTGGAGACAGCCTCTCTTGCTCAGATTCTTCTCCTGGAGTGCAAATTAATGAGGCGTTAAGGATGCAGATGGAAGTTCAGAAGCGTCTTCATGAACAACTTGAGGTTCAAAGACAACTACAAATGAGAATAGAGGCTCAGGGAAAGTACTTGCAGAAGATCATTGAAGAGCAACAGAAACTTGGTGGCGTCCTCAAAGGGTCTGATGCGTTACCATCATCTGAGGATAAGCAAAAGTTATCCCAGTTGGAGACACCTGGTGATGCATCTACCGGGTTGTCATCTCCCCGAAAGAAACACAGGATGGATGATGGGTTGCCGAGTGGTTGCACCACGTCTGATCTGCCTCCAAAAGGTGACCAAAAGAATGAATTTGTTGGTCAGTGGGATCGGGACATGTACCCTAGTGATGGTGGATTTGGTTTCAACTTGCAAACAGAGTTGAAAGAGGCAGAAGGTGGTGGTGCTACACAGAAAGGGCCTCTGGAGCTACGTCCCTTGTGTGATTCAGAACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

350

Amino Acids

38.48

Weight (kDa)

9.11

Isoelectric Point (pI)

47.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 107 - 158 1.4e-07 Myb-like DNA-binding domain
Myb_CC_LHEQLE PF14379 191 - 237 2.2e-24 MYB-CC type transfactor, LHEQLE motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 353
Acc36I ACCTGC 1 cut(s) 495
AccI GTMKAC 1 cut(s) 357
AccII CGCG 2 cut(s) 62, 90
AciI CCGC 1 cut(s) 349
AclWI GGATC 1 cut(s) 927
AcoI YGGCCR 1 cut(s) 113
AcsI RAATTY 2 cut(s) 182, 902
AcuI CTGAAG 1 cut(s) 231
AcyI GRCGYC 2 cut(s) 360, 720
AdeI CACNNNGTG 2 cut(s) 85, 791
AfaI GTAC 3 cut(s) 485, 680, 932
AfiI CCNNNNNNNGG 3 cut(s) 506, 884, 941
AflIII ACRYGT 2 cut(s) 165, 927
AgsI TTSAA 4 cut(s) 641, 698, 958, 976
AjiI CACGTC 1 cut(s) 867
AjnI CCWGG 3 cut(s) 427, 565, 787
AluBI AGCT 5 cut(s) 54, 122, 198, 232, 1021
AluI AGCT 5 cut(s) 54, 122, 198, 232, 1021
Alw26I GTCTC 3 cut(s) 501, 531, 776
AlwI GGATC 1 cut(s) 927
AoxI GGCC 2 cut(s) 113, 1010
ApoI RAATTY 2 cut(s) 182, 902
AseI ATTAAT 1 cut(s) 579
AspLEI GCGC 4 cut(s) 62, 90, 272, 327
AspS9I GGNCC 3 cut(s) 97, 380, 1010
AsuC2I CCSGG 1 cut(s) 805
AsuHPI GGTGA 2 cut(s) 803, 899
AvaII GGWCC 2 cut(s) 97, 380
BaeI ACNNNNGTAYC 2 cut(s) 452, 485
BbsI GAAGAC 1 cut(s) 611
BccI CCATC 8 cut(s) 371, 412, 500, 595, 754, 829, 836, 935
BceAI ACGGC 2 cut(s) 100, 207
BciT130I CCWGG 3 cut(s) 429, 567, 789
BcnI CCSGG 1 cut(s) 805
BcoDI GTCTC 3 cut(s) 501, 531, 776
BfaI CTAG 1 cut(s) 936
BfuAI ACCTGC 1 cut(s) 495
BglI GCCNNNNNGGC 1 cut(s) 112
BmcAI AGTACT 1 cut(s) 680
Bme1390I CCNGG 4 cut(s) 429, 567, 789, 805
Bme18I GGWCC 2 cut(s) 97, 380
BmgBI CACGTC 1 cut(s) 867
BmgT120I GGNCC 3 cut(s) 97, 380, 1010
BmiI GGNNCC 1 cut(s) 99
BmrFI CCNGG 4 cut(s) 429, 567, 789, 805
BmrI ACTGGG 1 cut(s) 769
BmsI GCATC 4 cut(s) 585, 727, 784, 806
BmuI ACTGGG 1 cut(s) 769
BpiI GAAGAC 1 cut(s) 611
BplI GAGNNNNNCTC 2 cut(s) 528, 560
BpmI CTGGAG 3 cut(s) 555, 588, 1037
Bpu10I CCTNAGC 1 cut(s) 669
BpuEI CTTGAG 1 cut(s) 653
BpuMI CCSGG 1 cut(s) 805
BsaHI GRCGYC 2 cut(s) 360, 720
Bsc4I CCNNNNNNNGG 3 cut(s) 506, 884, 941
Bse1I ACTGG 1 cut(s) 775
BseBI CCWGG 3 cut(s) 429, 567, 789
BseGI GGATG 3 cut(s) 600, 840, 844
BseLI CCNNNNNNNGG 3 cut(s) 506, 884, 941
BseMII CTCAG 5 cut(s) 230, 401, 567, 683, 744
BseNI ACTGG 1 cut(s) 775
Bsh1236I CGCG 2 cut(s) 62, 90
BshFI GGCC 2 cut(s) 115, 1012
BsiSI CCGG 3 cut(s) 303, 500, 804
BslFI GGGAC 4 cut(s) 83, 188, 938, 1011
BslI CCNNNNNNNGG 3 cut(s) 506, 884, 941
BsmAI GTCTC 3 cut(s) 501, 531, 776
BsmFI GGGAC 4 cut(s) 83, 188, 938, 1011
BsnI GGCC 2 cut(s) 115, 1012
Bsp143I GATC 4 cut(s) 337, 690, 871, 919
BspACI CCGC 1 cut(s) 349
BspANI GGCC 2 cut(s) 115, 1012
BspCNI CTCAG 5 cut(s) 229, 402, 566, 682, 745
BspFNI CGCG 2 cut(s) 62, 90
BspHI TCATGA 1 cut(s) 622
BspLI GGNNCC 1 cut(s) 99
BspMI ACCTGC 1 cut(s) 495
BspPI GGATC 1 cut(s) 927
BspQI GCTCTTC 2 cut(s) 446, 693
BsrI ACTGG 1 cut(s) 775
BssMI GATC 4 cut(s) 337, 690, 871, 919
BssNI GRCGYC 2 cut(s) 360, 720
Bst2UI CCWGG 3 cut(s) 429, 567, 789
Bst6I CTCTTC 2 cut(s) 446, 693
BstACI GRCGYC 2 cut(s) 360, 720
BstC8I GCNNGC 3 cut(s) 196, 234, 323
BstDEI CTNAG 6 cut(s) 199, 216, 410, 553, 669, 753
BstEII GGTNACC 1 cut(s) 887
BstENI CCTNNNNNAGG 1 cut(s) 882
BstF5I GGATG 3 cut(s) 600, 840, 844
BstFNI CGCG 2 cut(s) 62, 90
BstHHI GCGC 4 cut(s) 62, 90, 272, 327
BstKTI GATC 4 cut(s) 340, 693, 874, 922
BstMAI GTCTC 3 cut(s) 501, 531, 776
BstMBI GATC 4 cut(s) 337, 690, 871, 919
BstMWI GCNNNNNNNGC 3 cut(s) 112, 549, 1018
BstNI CCWGG 3 cut(s) 429, 567, 789
BstNSI RCATGY 2 cut(s) 169, 931
BstPI GGTNACC 1 cut(s) 887
BstSCI CCNGG 4 cut(s) 427, 565, 787, 803
BstUI CGCG 2 cut(s) 62, 90
BstV2I GAAGAC 1 cut(s) 611
BsuRI GGCC 2 cut(s) 115, 1012
BtrI CACGTC 1 cut(s) 867
BtsCI GGATG 3 cut(s) 600, 840, 844
BtsIMutI CAGTG 2 cut(s) 255, 920
BveI ACCTGC 1 cut(s) 495
Cac8I GCNNGC 3 cut(s) 196, 234, 323
CciI TCATGA 1 cut(s) 622
CfoI GCGC 4 cut(s) 62, 90, 272, 327
Cfr13I GGNCC 3 cut(s) 97, 380, 1010
CseI GACGC 3 cut(s) 368, 605, 709
CsiI ACCWGGT 1 cut(s) 787
Csp6I GTAC 3 cut(s) 484, 679, 931
CviAII CATG 5 cut(s) 166, 344, 446, 623, 928
CviQI GTAC 3 cut(s) 484, 679, 931
DdeI CTNAG 6 cut(s) 199, 216, 410, 553, 669, 753
DpnI GATC 4 cut(s) 339, 692, 873, 921
DpnII GATC 4 cut(s) 337, 690, 871, 919
DraIII CACNNNGTG 2 cut(s) 85, 791
DrdI GACNNNNNNGTC 1 cut(s) 353
DseDI GACNNNNNNGTC 1 cut(s) 353
EaeI YGGCCR 1 cut(s) 113
Eam1104I CTCTTC 2 cut(s) 446, 693
EarI CTCTTC 2 cut(s) 446, 693
Eco47I GGWCC 2 cut(s) 97, 380
Eco57I CTGAAG 1 cut(s) 231
Eco91I GGTNACC 1 cut(s) 887
EcoNI CCTNNNNNAGG 1 cut(s) 882
EcoO109I RGGNCCY 1 cut(s) 1010
EcoO65I GGTNACC 1 cut(s) 887
EcoRII CCWGG 3 cut(s) 427, 565, 787
EcoT22I ATGCAT 1 cut(s) 799
FaeI CATG 5 cut(s) 169, 347, 449, 626, 931
FaiI YATR 6 cut(s) 167, 210, 345, 447, 624, 929
FalI AAGNNNNNCTT 2 cut(s) 229, 261
FaqI GGGAC 4 cut(s) 83, 188, 938, 1011
FatI CATG 5 cut(s) 165, 343, 445, 622, 927
FblI GTMKAC 1 cut(s) 357
FokI GGATG 3 cut(s) 607, 847, 851
FspBI CTAG 1 cut(s) 936
GlaI GCGC 4 cut(s) 61, 89, 271, 326
GsuI CTGGAG 3 cut(s) 555, 588, 1037
HaeIII GGCC 2 cut(s) 115, 1012
HapII CCGG 3 cut(s) 303, 500, 804
HgaI GACGC 3 cut(s) 368, 605, 709
HhaI GCGC 4 cut(s) 62, 90, 272, 327
Hin1I GRCGYC 2 cut(s) 360, 720
Hin1II CATG 5 cut(s) 169, 347, 449, 626, 931
Hin6I GCGC 4 cut(s) 60, 88, 270, 325
HinP1I GCGC 4 cut(s) 60, 88, 270, 325
HincII GTYRAC 2 cut(s) 163, 358
HindII GTYRAC 2 cut(s) 163, 358
HinfI GANTC 5 cut(s) 40, 242, 494, 557, 1037
HpaII CCGG 3 cut(s) 303, 500, 804
HphI GGTGA 2 cut(s) 803, 899
Hpy166II GTNNAC 3 cut(s) 163, 358, 380
Hpy188I TCNGA 9 cut(s) 219, 226, 337, 556, 612, 736, 754, 871, 1042
Hpy188III TCNNGA 7 cut(s) 37, 187, 409, 534, 623, 923, 1016
Hpy8I GTNNAC 3 cut(s) 163, 358, 380
Hpy99I CGWCG 3 cut(s) 193, 359, 362
HpyAV CCTTC 1 cut(s) 980
HpyCH4IV ACGT 2 cut(s) 866, 1024
HpyCH4V TGCA 8 cut(s) 236, 479, 574, 598, 685, 797, 861, 964
HpyF10VI GCNNNNNNNGC 3 cut(s) 112, 549, 1018
HpyF3I CTNAG 6 cut(s) 199, 216, 410, 553, 669, 753
HpySE526I ACGT 2 cut(s) 866, 1024
Hsp92I GRCGYC 2 cut(s) 360, 720
Hsp92II CATG 5 cut(s) 169, 347, 449, 626, 931
HspAI GCGC 4 cut(s) 60, 88, 270, 325
Kzo9I GATC 4 cut(s) 337, 690, 871, 919
LguI GCTCTTC 2 cut(s) 446, 693
LmnI GCTCC 1 cut(s) 1018
LweI GCATC 4 cut(s) 585, 727, 784, 806
MabI ACCWGGT 1 cut(s) 787
MaeI CTAG 1 cut(s) 936
MaeII ACGT 2 cut(s) 866, 1024
MaeIII GTNAC 3 cut(s) 77, 741, 887
MalI GATC 4 cut(s) 339, 692, 873, 921
MboI GATC 4 cut(s) 337, 690, 871, 919
MboII GAAGA 7 cut(s) 237, 463, 535, 552, 611, 700, 710
MluCI AATT 4 cut(s) 27, 182, 576, 902
MlyI GAGTC 1 cut(s) 503
MmeI TCCRAC 1 cut(s) 759
Mph1103I ATGCAT 1 cut(s) 799
MseI TTAA 5 cut(s) 30, 48, 152, 579, 590
MspA1I CMGCKG 1 cut(s) 54
MspI CCGG 3 cut(s) 303, 500, 804
MspR9I CCNGG 4 cut(s) 429, 567, 789, 805
MvaI CCWGG 3 cut(s) 429, 567, 789
MvnI CGCG 2 cut(s) 62, 90
MwoI GCNNNNNNNGC 3 cut(s) 112, 549, 1018
NciI CCSGG 1 cut(s) 805
NdeII GATC 4 cut(s) 337, 690, 871, 919
NlaIII CATG 5 cut(s) 169, 347, 449, 626, 931
NlaIV GGNNCC 1 cut(s) 99
NmeAIII GCCGAG 1 cut(s) 876
NmuCI GTSAC 2 cut(s) 77, 887
NsiI ATGCAT 1 cut(s) 799
NspI RCATGY 2 cut(s) 169, 931
PagI TCATGA 1 cut(s) 622
PciI ACATGT 2 cut(s) 165, 927
PciSI GCTCTTC 2 cut(s) 446, 693
PfeI GAWTC 4 cut(s) 40, 242, 557, 1037
PfoI TCCNGGA 2 cut(s) 427, 565
PleI GAGTC 1 cut(s) 502
PpsI GAGTC 1 cut(s) 502
PscI ACATGT 2 cut(s) 165, 927
PshBI ATTAAT 1 cut(s) 579
Psp6I CCWGG 3 cut(s) 427, 565, 787
PspEI GGTNACC 1 cut(s) 887
PspGI CCWGG 3 cut(s) 427, 565, 787
PspN4I GGNNCC 1 cut(s) 99
PspPI GGNCC 3 cut(s) 97, 380, 1010
PvuII CAGCTG 1 cut(s) 54
RsaI GTAC 3 cut(s) 485, 680, 932
RsaNI GTAC 3 cut(s) 484, 679, 931
SalI GTCGAC 1 cut(s) 356
SapI GCTCTTC 2 cut(s) 446, 693
SaqAI TTAA 5 cut(s) 30, 48, 152, 579, 590
Sau3AI GATC 4 cut(s) 337, 690, 871, 919
Sau96I GGNCC 3 cut(s) 97, 380, 1010
ScaI AGTACT 1 cut(s) 680
SchI GAGTC 1 cut(s) 503
ScrFI CCNGG 4 cut(s) 429, 567, 789, 805
SexAI ACCWGGT 1 cut(s) 787
SfaNI GCATC 4 cut(s) 585, 727, 784, 806
SgrDI CGTCGACG 1 cut(s) 356
SinI GGWCC 2 cut(s) 97, 380
SmlI CTYRAG 1 cut(s) 632
SmoI CTYRAG 1 cut(s) 632
Sse9I AATT 4 cut(s) 27, 182, 576, 902
SsiI CCGC 1 cut(s) 349
SspMI CTAG 1 cut(s) 936
StyD4I CCNGG 4 cut(s) 427, 565, 787, 803
TaiI ACGT 2 cut(s) 869, 1027
TaqI TCGA 3 cut(s) 36, 188, 357
TasI AATT 4 cut(s) 27, 182, 576, 902
TatI WGTACW 1 cut(s) 678
TfiI GAWTC 4 cut(s) 40, 242, 557, 1037
Tru1I TTAA 5 cut(s) 30, 48, 152, 579, 590
Tru9I TTAA 5 cut(s) 30, 48, 152, 579, 590
TscAI CASTG 2 cut(s) 255, 920
TseFI GTSAC 2 cut(s) 77, 887
Tsp45I GTSAC 2 cut(s) 77, 887
TspDTI ATGAA 4 cut(s) 32, 611, 639, 915
TspRI CASTG 2 cut(s) 255, 920
VpaK11BI GGWCC 2 cut(s) 97, 380
VspI ATTAAT 1 cut(s) 579
XagI CCTNNNNNAGG 1 cut(s) 882
XapI RAATTY 2 cut(s) 182, 902
XceI RCATGY 2 cut(s) 169, 931
XmiI GTMKAC 1 cut(s) 357
XspI CTAG 1 cut(s) 936
ZrmI AGTACT 1 cut(s) 680
Zsp2I ATGCAT 1 cut(s) 799
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.