Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0005519

Physical Location & Seq

Genomic Coordinates Reverse (-)

26478491 .. 26479243

Gene Structure 753 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0269200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

ATGGTGGCTGCATTGAAGATTTGTGAAACCAAGATTGAATCTGCGACAACTGGATATAGTGTGCATAAATTAGATCTGTTTATCTTGGAATTCCTAGCAAATGAAGGTGGTGGTGAGGCACCCCTCGAGGGATCAATACTAGATATGACATCTTCAACTGAGTTGGTCGACATCCCCAGAATTTCATGTTTCTCTTTTGTGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

68

Amino Acids

7.32

Weight (kDa)

4.35

Isoelectric Point (pI)

32.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005519)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29370 FvH4_1g29370 FvH4_1g29370 FvH4_1g29370
malus_domestica	MD12G1111000.v1.1 MD14G1091900.v1.1
prunus_persica	Prupe.7G023300_v2.0.a1 Prupe.7G023300_v2.0.a1 Prupe.7G023300_v2.0.a1 Prupe.7G023300_v2.0.a1 Prupe.7G023300_v2.0.a1 Prupe.7G023300_v2.0.a1 Prupe.7G023300_v2.0.a1 Prupe.7G023300_v2.0.a1
pyrus_communis	pycom12g09310 pycom14g08990
rosa_chinensis	RchiOBHm_Chr3g0495021
rosa_laevigata	RLG00000022655
rosa_multiflora	Rmu_ssc0000058.1_g000002 Rmu_ssc0000058.1_g000009
rosa_roxburghii	Rroxscaffold_6G00390840
rosa_rugosa	Rorug03G0269100 Rorug03G0269200
rosa_samantha	Rh3AG318300 Rh3BG353300 Rh3BG353400 Rh3CG350200 Rh3DG352700
rosa_wichuraiana	Rw3G027750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	125
AccB1I	GGYRCC	1 cut(s)	118
AccI	GTMKAC	1 cut(s)	168
AclWI	GGATC	1 cut(s)	139
AcsI	RAATTY	2 cut(s)	89, 180
AfiI	CCNNNNNNNGG	1 cut(s)	128
AgsI	TTSAA	3 cut(s)	16, 38, 156
AlwI	GGATC	1 cut(s)	139
Ama87I	CYCGRG	1 cut(s)	125
ApeKI	GCWGC	1 cut(s)	8
ApoI	RAATTY	2 cut(s)	89, 180
AsuHPI	GGTGA	1 cut(s)	125
AvaI	CYCGRG	1 cut(s)	125
BanI	GGYRCC	1 cut(s)	118
BfaI	CTAG	2 cut(s)	95, 140
BglII	AGATCT	1 cut(s)	73
BisI	GCNGC	1 cut(s)	9
BlsI	GCNGC	1 cut(s)	10
BmeT110I	CYCGRG	1 cut(s)	125
BmiI	GGNNCC	1 cut(s)	120
Bsc4I	CCNNNNNNNGG	1 cut(s)	128
Bse1I	ACTGG	1 cut(s)	55
BseGI	GGATG	1 cut(s)	171
BseLI	CCNNNNNNNGG	1 cut(s)	128
BseMII	CTCAG	1 cut(s)	150
BseNI	ACTGG	1 cut(s)	55
BshNI	GGYRCC	1 cut(s)	118
BsiHKCI	CYCGRG	1 cut(s)	125
BslI	CCNNNNNNNGG	1 cut(s)	128
BsoBI	CYCGRG	1 cut(s)	125
Bsp143I	GATC	2 cut(s)	73, 131
BspCNI	CTCAG	1 cut(s)	151
BspLI	GGNNCC	1 cut(s)	120
BspPI	GGATC	1 cut(s)	139
BspT107I	GGYRCC	1 cut(s)	118
BsrI	ACTGG	1 cut(s)	55
BssMI	GATC	2 cut(s)	73, 131
BstDEI	CTNAG	1 cut(s)	159
BstF5I	GGATG	1 cut(s)	171
BstKTI	GATC	2 cut(s)	76, 134
BstMBI	GATC	2 cut(s)	73, 131
BstX2I	RGATCY	1 cut(s)	73
BstYI	RGATCY	1 cut(s)	73
BtsCI	GGATG	1 cut(s)	171
CviAII	CATG	1 cut(s)	186
CviJI	RGCY	1 cut(s)	8
CviKI_1	RGCY	1 cut(s)	8
DdeI	CTNAG	1 cut(s)	159
DpnI	GATC	2 cut(s)	75, 133
DpnII	GATC	2 cut(s)	73, 131
Eco88I	CYCGRG	1 cut(s)	125
EcoRI	GAATTC	1 cut(s)	89
FaeI	CATG	1 cut(s)	189
FaiI	YATR	4 cut(s)	57, 66, 146, 187
FatI	CATG	1 cut(s)	185
FblI	GTMKAC	1 cut(s)	168
Fnu4HI	GCNGC	1 cut(s)	9
FokI	GGATG	1 cut(s)	158
Fsp4HI	GCNGC	1 cut(s)	9
FspBI	CTAG	2 cut(s)	95, 140
GluI	GCNGC	1 cut(s)	9
Hin1II	CATG	1 cut(s)	189
HincII	GTYRAC	1 cut(s)	169
HindII	GTYRAC	1 cut(s)	169
HinfI	GANTC	1 cut(s)	38
HphI	GGTGA	1 cut(s)	125
Hpy166II	GTNNAC	1 cut(s)	169
Hpy8I	GTNNAC	1 cut(s)	169
HpyAV	CCTTC	1 cut(s)	98
HpyCH4V	TGCA	2 cut(s)	11, 64
HpyF3I	CTNAG	1 cut(s)	159
Hsp92II	CATG	1 cut(s)	189
Kzo9I	GATC	2 cut(s)	73, 131
LpnPI	CCDG	2 cut(s)	36, 190
MaeI	CTAG	2 cut(s)	95, 140
MalI	GATC	2 cut(s)	75, 133
MboI	GATC	2 cut(s)	73, 131
MboII	GAAGA	2 cut(s)	28, 144
MflI	RGATCY	1 cut(s)	73
MluCI	AATT	3 cut(s)	68, 89, 180
MnlI	CCTC	3 cut(s)	109, 121, 134
MseI	TTAA	1 cut(s)	205
NdeII	GATC	2 cut(s)	73, 131
NlaIII	CATG	1 cut(s)	189
NlaIV	GGNNCC	1 cut(s)	120
PaeR7I	CTCGAG	1 cut(s)	125
PfeI	GAWTC	1 cut(s)	38
PkrI	GCNGC	1 cut(s)	10
PspN4I	GGNNCC	1 cut(s)	120
PspXI	VCTCGAGB	1 cut(s)	125
PsuI	RGATCY	1 cut(s)	73
SalI	GTCGAC	1 cut(s)	167
SaqAI	TTAA	1 cut(s)	205
SatI	GCNGC	1 cut(s)	9
Sau3AI	GATC	2 cut(s)	73, 131
SetI	ASST	1 cut(s)	109
Sfr274I	CTCGAG	1 cut(s)	125
SgeI	CNNG	9 cut(s)	43, 63, 97, 107, 137, 139, 152, 189, 198
SlaI	CTCGAG	1 cut(s)	125
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
Sse9I	AATT	3 cut(s)	68, 89, 180
SspMI	CTAG	2 cut(s)	95, 140
TaqI	TCGA	2 cut(s)	126, 168
TasI	AATT	3 cut(s)	68, 89, 180
TfiI	GAWTC	1 cut(s)	38
Tru1I	TTAA	1 cut(s)	205
Tru9I	TTAA	1 cut(s)	205
TseI	GCWGC	1 cut(s)	8
TspDTI	ATGAA	2 cut(s)	117, 174
XapI	RAATTY	2 cut(s)	89, 180
XhoI	CTCGAG	1 cut(s)	125
XmiI	GTMKAC	1 cut(s)	168
XspI	CTAG	2 cut(s)	95, 140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.