Rh3BG353300
MYB Family

PHR1-LIKE 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0005519
Physical Location & Seq
Reverse (-)
41563556 .. 41564502
947 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG353300.1

Sequence Viewer

Length: 504 bp
ATGGTTGTTATAGTGCGAGAATATGGAACTGTTTCCCGAACCCTATCCTTTGACGATCAGATGAAAGCTCATAACATATCATCAAAGCTTGTTCAAAGACAACTACAAATGAGAATAGAGGCTCAGGGAAAGTACTTGCAGAAGATCATTGAGGAGCAACAGAAACTTGGTGGCGTCCTCAAAGGGTCTGATGCATTACCATCATCTGAGGATAAGCAAAAGCTATCCCATTTGGAGACACCTGGTGATGCATCTACCGGGTTGTCATCTCCCCGAAAGAAACACAGGATGGATGATGGGATACCGAGTGATTGCACCACGTCTGATCTGCCTCCAAAAGGTGACCAAAAGAATGAATTTGTTGGTCAGTGGGATCGGGACATGTACCCTAGTGATGGTGGATTTGGTTTCAACTTGCAAACAGAGTTGAAAGAGGCAGAAGGTGGTGGTGCTACACAGAAAGGGCCTCTGGAGCTACGTCCCTTGTGTGATTCAGAACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

167

Amino Acids

18.47

Weight (kDa)

5.43

Isoelectric Point (pI)

52.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_CC_LHEQLE PF14379 31 - 55 7e-09 MYB-CC type transfactor, LHEQLE motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 381
AcsI RAATTY 1 cut(s) 356
AcyI GRCGYC 1 cut(s) 174
AdeI CACNNNGTG 1 cut(s) 245
AfaI GTAC 2 cut(s) 134, 386
AfiI CCNNNNNNNGG 2 cut(s) 338, 395
AflIII ACRYGT 1 cut(s) 381
AgsI TTSAA 3 cut(s) 95, 412, 430
AjiI CACGTC 1 cut(s) 321
AjnI CCWGG 1 cut(s) 241
AluBI AGCT 4 cut(s) 68, 88, 223, 475
AluI AGCT 4 cut(s) 68, 88, 223, 475
Alw26I GTCTC 1 cut(s) 230
AlwI GGATC 1 cut(s) 381
AoxI GGCC 1 cut(s) 464
ApoI RAATTY 1 cut(s) 356
Asp700I GAANNNNTTC 1 cut(s) 31
AspS9I GGNCC 1 cut(s) 464
AsuC2I CCSGG 1 cut(s) 259
AsuHPI GGTGA 2 cut(s) 257, 353
BccI CCATC 4 cut(s) 208, 283, 290, 389
BciT130I CCWGG 1 cut(s) 243
BciVI GTATCC 1 cut(s) 294
BcnI CCSGG 1 cut(s) 259
BcoDI GTCTC 1 cut(s) 230
BfaI CTAG 1 cut(s) 390
BfuI GTATCC 1 cut(s) 294
BmcAI AGTACT 1 cut(s) 134
Bme1390I CCNGG 2 cut(s) 243, 259
BmgBI CACGTC 1 cut(s) 321
BmgT120I GGNCC 1 cut(s) 464
BmrFI CCNGG 2 cut(s) 243, 259
BmsI GCATC 3 cut(s) 181, 238, 260
BpmI CTGGAG 1 cut(s) 491
Bpu10I CCTNAGC 1 cut(s) 123
BpuMI CCSGG 1 cut(s) 259
BsaHI GRCGYC 1 cut(s) 174
Bsc4I CCNNNNNNNGG 2 cut(s) 338, 395
BseBI CCWGG 1 cut(s) 243
BseGI GGATG 2 cut(s) 294, 298
BseLI CCNNNNNNNGG 2 cut(s) 338, 395
BseMII CTCAG 2 cut(s) 137, 198
BseRI GAGGAG 1 cut(s) 167
BshFI GGCC 1 cut(s) 466
BsiSI CCGG 1 cut(s) 258
BslFI GGGAC 2 cut(s) 392, 465
BslI CCNNNNNNNGG 2 cut(s) 338, 395
BsmAI GTCTC 1 cut(s) 230
BsmFI GGGAC 2 cut(s) 392, 465
BsnI GGCC 1 cut(s) 466
Bsp143I GATC 4 cut(s) 55, 144, 325, 373
BspANI GGCC 1 cut(s) 466
BspCNI CTCAG 2 cut(s) 136, 199
BspPI GGATC 1 cut(s) 381
BssMI GATC 4 cut(s) 55, 144, 325, 373
BssNI GRCGYC 1 cut(s) 174
Bst2UI CCWGG 1 cut(s) 243
Bst4CI ACNGT 1 cut(s) 31
BstACI GRCGYC 1 cut(s) 174
BstDEI CTNAG 2 cut(s) 123, 207
BstEII GGTNACC 1 cut(s) 341
BstENI CCTNNNNNAGG 1 cut(s) 336
BstF5I GGATG 2 cut(s) 294, 298
BstKTI GATC 4 cut(s) 58, 147, 328, 376
BstMAI GTCTC 1 cut(s) 230
BstMBI GATC 4 cut(s) 55, 144, 325, 373
BstMWI GCNNNNNNNGC 1 cut(s) 472
BstNI CCWGG 1 cut(s) 243
BstNSI RCATGY 1 cut(s) 385
BstPI GGTNACC 1 cut(s) 341
BstSCI CCNGG 2 cut(s) 241, 257
BsuI GTATCC 1 cut(s) 294
BsuRI GGCC 1 cut(s) 466
BtrI CACGTC 1 cut(s) 321
BtsCI GGATG 2 cut(s) 294, 298
BtsIMutI CAGTG 1 cut(s) 374
Cfr13I GGNCC 1 cut(s) 464
CseI GACGC 1 cut(s) 163
CsiI ACCWGGT 1 cut(s) 241
Csp6I GTAC 2 cut(s) 133, 385
CviAII CATG 1 cut(s) 382
CviJI RGCY 6 cut(s) 68, 88, 122, 223, 466, 475
CviKI_1 RGCY 6 cut(s) 68, 88, 122, 223, 466, 475
CviQI GTAC 2 cut(s) 133, 385
DdeI CTNAG 2 cut(s) 123, 207
DpnI GATC 4 cut(s) 57, 146, 327, 375
DpnII GATC 4 cut(s) 55, 144, 325, 373
DraIII CACNNNGTG 1 cut(s) 245
Eco91I GGTNACC 1 cut(s) 341
EcoNI CCTNNNNNAGG 1 cut(s) 336
EcoO109I RGGNCCY 1 cut(s) 464
EcoO65I GGTNACC 1 cut(s) 341
EcoRII CCWGG 1 cut(s) 241
EcoT22I ATGCAT 2 cut(s) 196, 253
FaeI CATG 1 cut(s) 385
FaiI YATR 5 cut(s) 11, 24, 72, 77, 383
FaqI GGGAC 2 cut(s) 392, 465
FatI CATG 1 cut(s) 381
FokI GGATG 2 cut(s) 301, 305
FspBI CTAG 1 cut(s) 390
GsuI CTGGAG 1 cut(s) 491
HaeIII GGCC 1 cut(s) 466
HapII CCGG 1 cut(s) 258
HgaI GACGC 1 cut(s) 163
Hin1I GRCGYC 1 cut(s) 174
Hin1II CATG 1 cut(s) 385
HindIII AAGCTT 1 cut(s) 86
HinfI GANTC 1 cut(s) 491
HpaII CCGG 1 cut(s) 258
HphI GGTGA 2 cut(s) 257, 353
Hpy188I TCNGA 5 cut(s) 60, 190, 208, 325, 496
Hpy188III TCNNGA 3 cut(s) 36, 377, 470
HpyAV CCTTC 1 cut(s) 434
HpyCH4III ACNGT 1 cut(s) 31
HpyCH4IV ACGT 2 cut(s) 320, 478
HpyCH4V TGCA 5 cut(s) 139, 194, 251, 315, 418
HpyF10VI GCNNNNNNNGC 1 cut(s) 472
HpyF3I CTNAG 2 cut(s) 123, 207
HpySE526I ACGT 2 cut(s) 320, 478
Hsp92I GRCGYC 1 cut(s) 174
Hsp92II CATG 1 cut(s) 385
Kzo9I GATC 4 cut(s) 55, 144, 325, 373
LmnI GCTCC 2 cut(s) 154, 472
LpnPI CCDG 6 cut(s) 110, 228, 255, 271, 271, 455
LweI GCATC 3 cut(s) 181, 238, 260
MabI ACCWGGT 1 cut(s) 241
MaeI CTAG 1 cut(s) 390
MaeII ACGT 2 cut(s) 320, 478
MaeIII GTNAC 1 cut(s) 341
MalI GATC 4 cut(s) 57, 146, 327, 375
MboI GATC 4 cut(s) 55, 144, 325, 373
MboII GAAGA 1 cut(s) 154
MluCI AATT 1 cut(s) 356
MnlI CCTC 7 cut(s) 112, 145, 188, 202, 342, 427, 477
Mph1103I ATGCAT 2 cut(s) 196, 253
MroXI GAANNNNTTC 1 cut(s) 31
MspI CCGG 1 cut(s) 258
MspR9I CCNGG 2 cut(s) 243, 259
MvaI CCWGG 1 cut(s) 243
MwoI GCNNNNNNNGC 1 cut(s) 472
NciI CCSGG 1 cut(s) 259
NdeII GATC 4 cut(s) 55, 144, 325, 373
NlaIII CATG 1 cut(s) 385
NmuCI GTSAC 1 cut(s) 341
NsiI ATGCAT 2 cut(s) 196, 253
NspI RCATGY 1 cut(s) 385
PciI ACATGT 1 cut(s) 381
PdmI GAANNNNTTC 1 cut(s) 31
PfeI GAWTC 1 cut(s) 491
PscI ACATGT 1 cut(s) 381
Psp6I CCWGG 1 cut(s) 241
PspEI GGTNACC 1 cut(s) 341
PspGI CCWGG 1 cut(s) 241
PspPI GGNCC 1 cut(s) 464
RsaI GTAC 2 cut(s) 134, 386
RsaNI GTAC 2 cut(s) 133, 385
Sau3AI GATC 4 cut(s) 55, 144, 325, 373
Sau96I GGNCC 1 cut(s) 464
ScaI AGTACT 1 cut(s) 134
ScrFI CCNGG 2 cut(s) 243, 259
SetI ASST 9 cut(s) 70, 90, 225, 244, 323, 343, 445, 477, 481
SexAI ACCWGGT 1 cut(s) 241
SfaNI GCATC 3 cut(s) 181, 238, 260
Sse9I AATT 1 cut(s) 356
SspMI CTAG 1 cut(s) 390
StyD4I CCNGG 2 cut(s) 241, 257
TaaI ACNGT 1 cut(s) 31
TaiI ACGT 2 cut(s) 323, 481
TasI AATT 1 cut(s) 356
TatI WGTACW 1 cut(s) 132
TfiI GAWTC 1 cut(s) 491
TscAI CASTG 1 cut(s) 374
TseFI GTSAC 1 cut(s) 341
Tsp45I GTSAC 1 cut(s) 341
TspDTI ATGAA 2 cut(s) 77, 369
TspRI CASTG 1 cut(s) 374
XagI CCTNNNNNAGG 1 cut(s) 336
XapI RAATTY 1 cut(s) 356
XceI RCATGY 1 cut(s) 385
XmnI GAANNNNTTC 1 cut(s) 31
XspI CTAG 1 cut(s) 390
ZrmI AGTACT 1 cut(s) 134
Zsp2I ATGCAT 2 cut(s) 196, 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.