Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000058.1

Orthogroup ID

OG0005519

Physical Location & Seq

Genomic Coordinates Reverse (-)

1323 .. 1748

Gene Structure 426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000058.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

atgcatgttcaggttcaaagacaactacaaatgagaatagaggctcagggaaagtacttgcagaagatcattgaggagcaacagaaacttggtggcgtcctcaaagggtctgatgcattaccatcatctgaggataagcaaaagctatcccagttggagacacctggtgatgcatctactgggttgtcatctccccgaaagaaacacaggatggatgatgggttaccgagtgattgcaccacgtctaatgtgcctccaaaaggtgaccaaaagaatgaatttgttggtcagtgggatcgggacatgtaccctagcgatggcggatttggtttcaacttgcaaacagagttgaaagaggcagaaggtggtggtgctacacagaaagggcctctggagctacgtcccttgtgtgattcagaacaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

141

Amino Acids

15.53

Weight (kDa)

5.22

Isoelectric Point (pI)

62.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005519)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g29370 FvH4_1g29370 FvH4_1g29370 FvH4_1g29370
malus_domestica	MD12G1111000.v1.1 MD14G1091900.v1.1
prunus_persica	Prupe.7G023300_v2.0.a1 Prupe.7G023300_v2.0.a1 Prupe.7G023300_v2.0.a1 Prupe.7G023300_v2.0.a1 Prupe.7G023300_v2.0.a1 Prupe.7G023300_v2.0.a1 Prupe.7G023300_v2.0.a1 Prupe.7G023300_v2.0.a1
pyrus_communis	pycom12g09310 pycom14g08990
rosa_chinensis	RchiOBHm_Chr3g0495021
rosa_laevigata	RLG00000022655
rosa_multiflora	Rmu_ssc0000058.1_g000002 Rmu_ssc0000058.1_g000009
rosa_roxburghii	Rroxscaffold_6G00390840
rosa_rugosa	Rorug03G0269100 Rorug03G0269200
rosa_samantha	Rh3AG318300 Rh3BG353300 Rh3BG353400 Rh3CG350200 Rh3DG352700
rosa_wichuraiana	Rw3G027750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	321
AclWI	GGATC	1 cut(s)	303
AcsI	RAATTY	1 cut(s)	278
AcyI	GRCGYC	1 cut(s)	96
AdeI	CACNNNGTG	1 cut(s)	167
AfaI	GTAC	2 cut(s)	56, 308
AfiI	CCNNNNNNNGG	2 cut(s)	260, 317
AflIII	ACRYGT	1 cut(s)	303
AgsI	TTSAA	3 cut(s)	17, 334, 352
AjiI	CACGTC	1 cut(s)	243
AjnI	CCWGG	1 cut(s)	163
AluBI	AGCT	2 cut(s)	145, 397
AluI	AGCT	2 cut(s)	145, 397
Alw26I	GTCTC	1 cut(s)	152
AlwI	GGATC	1 cut(s)	303
AoxI	GGCC	1 cut(s)	386
ApoI	RAATTY	1 cut(s)	278
AspS9I	GGNCC	1 cut(s)	386
AsuHPI	GGTGA	2 cut(s)	179, 275
BccI	CCATC	4 cut(s)	130, 205, 212, 311
BciT130I	CCWGG	1 cut(s)	165
BcoDI	GTCTC	1 cut(s)	152
BfaI	CTAG	1 cut(s)	312
BmcAI	AGTACT	1 cut(s)	56
Bme1390I	CCNGG	1 cut(s)	165
BmgBI	CACGTC	1 cut(s)	243
BmgT120I	GGNCC	1 cut(s)	386
BmrFI	CCNGG	1 cut(s)	165
BmrI	ACTGGG	2 cut(s)	145, 189
BmsI	GCATC	3 cut(s)	103, 160, 182
BmuI	ACTGGG	2 cut(s)	145, 189
BpmI	CTGGAG	1 cut(s)	413
Bpu10I	CCTNAGC	1 cut(s)	45
BsaHI	GRCGYC	1 cut(s)	96
Bsc4I	CCNNNNNNNGG	2 cut(s)	260, 317
Bse1I	ACTGG	2 cut(s)	151, 184
BseBI	CCWGG	1 cut(s)	165
BseGI	GGATG	2 cut(s)	216, 220
BseLI	CCNNNNNNNGG	2 cut(s)	260, 317
BseMII	CTCAG	2 cut(s)	59, 120
BseNI	ACTGG	2 cut(s)	151, 184
BseRI	GAGGAG	1 cut(s)	89
BshFI	GGCC	1 cut(s)	388
BslFI	GGGAC	2 cut(s)	314, 387
BslI	CCNNNNNNNGG	2 cut(s)	260, 317
BsmAI	GTCTC	1 cut(s)	152
BsmFI	GGGAC	2 cut(s)	314, 387
BsnI	GGCC	1 cut(s)	388
Bsp143I	GATC	2 cut(s)	66, 295
BspACI	CCGC	1 cut(s)	321
BspANI	GGCC	1 cut(s)	388
BspCNI	CTCAG	2 cut(s)	58, 121
BspPI	GGATC	1 cut(s)	303
BsrI	ACTGG	2 cut(s)	151, 184
BssMI	GATC	2 cut(s)	66, 295
BssNI	GRCGYC	1 cut(s)	96
Bst2UI	CCWGG	1 cut(s)	165
BstACI	GRCGYC	1 cut(s)	96
BstDEI	CTNAG	2 cut(s)	45, 129
BstEII	GGTNACC	2 cut(s)	222, 263
BstENI	CCTNNNNNAGG	1 cut(s)	258
BstF5I	GGATG	2 cut(s)	216, 220
BstKTI	GATC	2 cut(s)	69, 298
BstMAI	GTCTC	1 cut(s)	152
BstMBI	GATC	2 cut(s)	66, 295
BstMWI	GCNNNNNNNGC	1 cut(s)	394
BstNI	CCWGG	1 cut(s)	165
BstNSI	RCATGY	2 cut(s)	8, 307
BstPI	GGTNACC	2 cut(s)	222, 263
BstSCI	CCNGG	1 cut(s)	163
BsuRI	GGCC	1 cut(s)	388
BtgZI	GCGATG	1 cut(s)	330
BtrI	CACGTC	1 cut(s)	243
BtsCI	GGATG	2 cut(s)	216, 220
BtsIMutI	CAGTG	1 cut(s)	296
Cfr13I	GGNCC	1 cut(s)	386
CseI	GACGC	1 cut(s)	85
CsiI	ACCWGGT	1 cut(s)	163
Csp6I	GTAC	2 cut(s)	55, 307
CviAII	CATG	2 cut(s)	5, 304
CviJI	RGCY	4 cut(s)	44, 145, 388, 397
CviKI_1	RGCY	4 cut(s)	44, 145, 388, 397
CviQI	GTAC	2 cut(s)	55, 307
DdeI	CTNAG	2 cut(s)	45, 129
DpnI	GATC	2 cut(s)	68, 297
DpnII	GATC	2 cut(s)	66, 295
DraIII	CACNNNGTG	1 cut(s)	167
EciI	GGCGGA	1 cut(s)	336
Eco91I	GGTNACC	2 cut(s)	222, 263
EcoNI	CCTNNNNNAGG	1 cut(s)	258
EcoO109I	RGGNCCY	1 cut(s)	386
EcoO65I	GGTNACC	2 cut(s)	222, 263
EcoRII	CCWGG	1 cut(s)	163
EcoT22I	ATGCAT	3 cut(s)	6, 118, 175
FaeI	CATG	2 cut(s)	8, 307
FaiI	YATR	2 cut(s)	6, 305
FaqI	GGGAC	2 cut(s)	314, 387
FatI	CATG	2 cut(s)	4, 303
FokI	GGATG	2 cut(s)	223, 227
FspBI	CTAG	1 cut(s)	312
GsuI	CTGGAG	1 cut(s)	413
HaeIII	GGCC	1 cut(s)	388
HgaI	GACGC	1 cut(s)	85
Hin1I	GRCGYC	1 cut(s)	96
Hin1II	CATG	2 cut(s)	8, 307
HinfI	GANTC	1 cut(s)	413
HphI	GGTGA	2 cut(s)	179, 275
Hpy188I	TCNGA	3 cut(s)	112, 130, 418
Hpy188III	TCNNGA	2 cut(s)	299, 392
HpyAV	CCTTC	1 cut(s)	356
HpyCH4IV	ACGT	2 cut(s)	242, 400
HpyCH4V	TGCA	6 cut(s)	4, 61, 116, 173, 237, 340
HpyF10VI	GCNNNNNNNGC	1 cut(s)	394
HpyF3I	CTNAG	2 cut(s)	45, 129
HpySE526I	ACGT	2 cut(s)	242, 400
Hsp92I	GRCGYC	1 cut(s)	96
Hsp92II	CATG	2 cut(s)	8, 307
Kzo9I	GATC	2 cut(s)	66, 295
LmnI	GCTCC	2 cut(s)	76, 394
LpnPI	CCDG	7 cut(s)	32, 150, 164, 165, 177, 193, 377
LweI	GCATC	3 cut(s)	103, 160, 182
MabI	ACCWGGT	1 cut(s)	163
MaeI	CTAG	1 cut(s)	312
MaeII	ACGT	2 cut(s)	242, 400
MaeIII	GTNAC	2 cut(s)	222, 263
MalI	GATC	2 cut(s)	68, 297
MboI	GATC	2 cut(s)	66, 295
MboII	GAAGA	1 cut(s)	76
MluCI	AATT	1 cut(s)	278
MmeI	TCCRAC	1 cut(s)	135
MnlI	CCTC	7 cut(s)	34, 67, 110, 124, 264, 349, 399
Mph1103I	ATGCAT	3 cut(s)	6, 118, 175
MspR9I	CCNGG	1 cut(s)	165
MvaI	CCWGG	1 cut(s)	165
MwoI	GCNNNNNNNGC	1 cut(s)	394
NdeII	GATC	2 cut(s)	66, 295
NlaIII	CATG	2 cut(s)	8, 307
NmuCI	GTSAC	1 cut(s)	263
NsiI	ATGCAT	3 cut(s)	6, 118, 175
NspI	RCATGY	2 cut(s)	8, 307
PciI	ACATGT	1 cut(s)	303
PfeI	GAWTC	1 cut(s)	413
PscI	ACATGT	1 cut(s)	303
Psp6I	CCWGG	1 cut(s)	163
PspEI	GGTNACC	2 cut(s)	222, 263
PspGI	CCWGG	1 cut(s)	163
PspPI	GGNCC	1 cut(s)	386
RsaI	GTAC	2 cut(s)	56, 308
RsaNI	GTAC	2 cut(s)	55, 307
Sau3AI	GATC	2 cut(s)	66, 295
Sau96I	GGNCC	1 cut(s)	386
ScaI	AGTACT	1 cut(s)	56
ScrFI	CCNGG	1 cut(s)	165
SetI	ASST	8 cut(s)	15, 147, 166, 245, 265, 367, 399, 403
SexAI	ACCWGGT	1 cut(s)	163
SfaNI	GCATC	3 cut(s)	103, 160, 182
Sse9I	AATT	1 cut(s)	278
SsiI	CCGC	1 cut(s)	321
SspMI	CTAG	1 cut(s)	312
StyD4I	CCNGG	1 cut(s)	163
TaiI	ACGT	2 cut(s)	245, 403
TasI	AATT	1 cut(s)	278
TatI	WGTACW	1 cut(s)	54
TfiI	GAWTC	1 cut(s)	413
TscAI	CASTG	1 cut(s)	296
TseFI	GTSAC	1 cut(s)	263
Tsp45I	GTSAC	1 cut(s)	263
TspDTI	ATGAA	1 cut(s)	291
TspRI	CASTG	1 cut(s)	296
XagI	CCTNNNNNAGG	1 cut(s)	258
XapI	RAATTY	1 cut(s)	278
XceI	RCATGY	2 cut(s)	8, 307
XspI	CTAG	1 cut(s)	312
ZrmI	AGTACT	1 cut(s)	56
Zsp2I	ATGCAT	3 cut(s)	6, 118, 175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.