Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0002344

Physical Location & Seq

Genomic Coordinates Reverse (-)

23002847 .. 23003698

Gene Structure 852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g29700.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGGAAGTGGAATTTTGAAAGGAGAGGAAGTTGTTCAGGAGGACTATGGACACCTGGAGCAGGAGAGCATTAAGGAAAAAGTTTTGGAGGAAGAGATGGATGTTGAAAAGCCAGTGGTTGTCGAAACATTATCACCCGAGGAAGACATTTTTTCAGTTCTGGGACATGTAGAGAAAAAACATAAATCAGAGATTAGCAGCCAGAGTAAGCAGAAGATGGAGAAGGAGCAGCAGTGTATACCATCGGATAAGACAATGAAGCAGCAAATAAAGACAGACAAGAAGAACAATTTGAATCAGATGGAGACATTAAACTTGGAGAACCTACTAGAGGACATCAGTGAAAATATTCTGGAAGACAAACAAGTAAGAGACAAGGAGAACGTCAGGCTATCTAGTCTCTTTAGCGGCGAGAAGATACAGAAACGCAAAGAAGCAACAGAAAAAGGGGAGAAAAGCAAAGAGAAGGGTTTGGATTCCAATTTGCCAAATAGGTGGATGCATGCTGAAATAGAAGGTAGGAGGAGAAAGAGTGAAGAGAGGGGATTCGACTGGTGGTCTTCGTTCTGTGGTCGACCGCTCCATGGTGGCAGCTGGGCGGCGTTGCTGCTCACTCTCAGACCCTCTCTCTCTTCTCTCTCGACAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004652 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006276 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031124 GO:0034641 GO:0043170 GO:0043412 GO:0043631 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0070566 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

217

Amino Acids

24.84

Weight (kDa)

5.59

Isoelectric Point (pI)

65.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17580
fragaria_vesca	FvH4_1g10510 FvH4_1g10510 FvH4_1g10510 FvH4_1g10510 FvH4_1g29700
malus_domestica	MD02G1119000.v1.1 MD15G1233000.v1.1
prunus_persica	Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1
pyrus_communis	pycom02g09260 pycom02g09270 pycom15g20750
rosa_chinensis	RchiOBHm_Chr2g0097411 RchiOBHm_Chr2g0097511 RchiOBHm_Chr3g0465401
rosa_laevigata	RLG00000016724
rosa_multiflora	Rmu_sc0001060.1_g000002 Rmu_sc0004220.1_g000008 Rmu_sc0011781.1_g000006
rosa_roxburghii	Rroxscaffold_2G00144710
rosa_rugosa	Rorug02G0066800 Rorug02G0066800 Rorug02G0066800
rosa_samantha	Rh2AG113200 Rh2BG116200 Rh2BG116300 Rh2CG118200 Rh2CG118300 Rh2DG117300 Rh3BG141600 Rh3CG142700 Rh3DG142700
rosa_wichuraiana	Rw2G008870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	580
AccI	GTMKAC	2 cut(s)	238, 574
AciI	CCGC	3 cut(s)	408, 578, 599
AcsI	RAATTY	1 cut(s)	12
AfiI	CCNNNNNNNGG	3 cut(s)	61, 331, 584
AflIII	ACRYGT	1 cut(s)	166
AgsI	TTSAA	3 cut(s)	19, 107, 295
AhdI	GACNNNNNGTC	1 cut(s)	556
AjnI	CCWGG	1 cut(s)	54
AluBI	AGCT	1 cut(s)	594
AluI	AGCT	1 cut(s)	594
Alw26I	GTCTC	3 cut(s)	299, 366, 404
Ama87I	CYCGRG	1 cut(s)	137
ApeKI	GCWGC	5 cut(s)	198, 229, 262, 591, 607
ApoI	RAATTY	1 cut(s)	12
Asp700I	GAANNNNTTC	2 cut(s)	33, 348
AsuHPI	GGTGA	1 cut(s)	126
AvaI	CYCGRG	1 cut(s)	137
BbsI	GAAGAC	3 cut(s)	150, 363, 552
BbvI	GCAGC	5 cut(s)	210, 241, 274, 594, 603
BccI	CCATC	4 cut(s)	91, 211, 250, 295
BciT130I	CCWGG	1 cut(s)	56
BcoDI	GTCTC	3 cut(s)	299, 366, 404
BfaI	CTAG	2 cut(s)	329, 396
BisI	GCNGC	7 cut(s)	199, 230, 263, 409, 592, 600, 608
BlsI	GCNGC	7 cut(s)	200, 231, 264, 410, 593, 601, 609
Bme1390I	CCNGG	1 cut(s)	56
BmeRI	GACNNNNNGTC	1 cut(s)	556
BmeT110I	CYCGRG	1 cut(s)	137
BmrFI	CCNGG	1 cut(s)	56
BmsI	GCATC	1 cut(s)	489
BpiI	GAAGAC	3 cut(s)	150, 363, 552
BpmI	CTGGAG	1 cut(s)	77
BsaJI	CCNNGG	2 cut(s)	138, 583
BsaXI	ACNNNNNCTCC	6 cut(s)	15, 45, 218, 248, 517, 547
Bsc4I	CCNNNNNNNGG	3 cut(s)	61, 331, 584
Bse1I	ACTGG	2 cut(s)	113, 557
BseBI	CCWGG	1 cut(s)	56
BseDI	CCNNGG	2 cut(s)	138, 583
BseGI	GGATG	2 cut(s)	106, 504
BseLI	CCNNNNNNNGG	3 cut(s)	61, 331, 584
BseMII	CTCAG	1 cut(s)	631
BseNI	ACTGG	2 cut(s)	113, 557
BseRI	GAGGAG	1 cut(s)	538
BseXI	GCAGC	5 cut(s)	210, 241, 274, 594, 603
BseYI	CCCAGC	1 cut(s)	594
Bsh1285I	CGRYCG	1 cut(s)	578
BsiEI	CGRYCG	1 cut(s)	578
BsiHKCI	CYCGRG	1 cut(s)	137
BslFI	GGGAC	1 cut(s)	177
BslI	CCNNNNNNNGG	3 cut(s)	61, 331, 584
BsmAI	GTCTC	3 cut(s)	299, 366, 404
BsmFI	GGGAC	1 cut(s)	177
BsoBI	CYCGRG	1 cut(s)	137
Bsp19I	CCATGG	1 cut(s)	583
BspACI	CCGC	3 cut(s)	408, 578, 599
BspCNI	CTCAG	1 cut(s)	630
BsrBI	CCGCTC	1 cut(s)	580
BsrI	ACTGG	2 cut(s)	113, 557
BssECI	CCNNGG	2 cut(s)	138, 583
BssNAI	GTATAC	1 cut(s)	239
BssT1I	CCWWGG	1 cut(s)	583
Bst1107I	GTATAC	1 cut(s)	239
Bst2UI	CCWGG	1 cut(s)	56
Bst6I	CTCTTC	3 cut(s)	87, 531, 637
BstC8I	GCNNGC	1 cut(s)	504
BstDEI	CTNAG	1 cut(s)	617
BstDSI	CCRYGG	1 cut(s)	583
BstENI	CCTNNNNNAGG	2 cut(s)	59, 329
BstF5I	GGATG	2 cut(s)	106, 504
BstMAI	GTCTC	3 cut(s)	299, 366, 404
BstMCI	CGRYCG	1 cut(s)	578
BstNI	CCWGG	1 cut(s)	56
BstNSI	RCATGY	2 cut(s)	170, 506
BstSCI	CCNGG	1 cut(s)	54
BstV1I	GCAGC	5 cut(s)	210, 241, 274, 594, 603
BstV2I	GAAGAC	3 cut(s)	150, 363, 552
BstXI	CCANNNNNNTGG	1 cut(s)	495
BstZ17I	GTATAC	1 cut(s)	239
BtgI	CCRYGG	1 cut(s)	583
BtsCI	GGATG	2 cut(s)	106, 504
BtsI	GCAGTG	1 cut(s)	239
BtsIMutI	CAGTG	3 cut(s)	120, 239, 346
Cac8I	GCNNGC	1 cut(s)	504
CviAII	CATG	3 cut(s)	167, 503, 584
CviJI	RGCY	4 cut(s)	112, 201, 391, 594
CviKI_1	RGCY	4 cut(s)	112, 201, 391, 594
DdeI	CTNAG	1 cut(s)	617
DriI	GACNNNNNGTC	1 cut(s)	556
Eam1104I	CTCTTC	3 cut(s)	87, 531, 637
Eam1105I	GACNNNNNGTC	1 cut(s)	556
EarI	CTCTTC	3 cut(s)	87, 531, 637
Eco130I	CCWWGG	1 cut(s)	583
Eco88I	CYCGRG	1 cut(s)	137
EcoNI	CCTNNNNNAGG	2 cut(s)	59, 329
EcoRII	CCWGG	1 cut(s)	54
EcoT14I	CCWWGG	1 cut(s)	583
EcoT22I	ATGCAT	1 cut(s)	504
ErhI	CCWWGG	1 cut(s)	583
FaeI	CATG	3 cut(s)	170, 506, 587
FaiI	YATR	6 cut(s)	48, 168, 183, 239, 504, 585
FaqI	GGGAC	1 cut(s)	177
FatI	CATG	3 cut(s)	166, 502, 583
FblI	GTMKAC	2 cut(s)	238, 574
Fnu4HI	GCNGC	7 cut(s)	199, 230, 263, 409, 592, 600, 608
FokI	GGATG	2 cut(s)	113, 511
Fsp4HI	GCNGC	7 cut(s)	199, 230, 263, 409, 592, 600, 608
FspBI	CTAG	2 cut(s)	329, 396
GluI	GCNGC	7 cut(s)	199, 230, 263, 409, 592, 600, 608
GsaI	CCCAGC	1 cut(s)	598
GsuI	CTGGAG	1 cut(s)	77
Hin1II	CATG	3 cut(s)	170, 506, 587
HincII	GTYRAC	1 cut(s)	575
HindII	GTYRAC	1 cut(s)	575
HinfI	GANTC	3 cut(s)	295, 476, 546
HphI	GGTGA	1 cut(s)	126
Hpy166II	GTNNAC	2 cut(s)	239, 575
Hpy188I	TCNGA	4 cut(s)	190, 247, 300, 620
Hpy188III	TCNNGA	3 cut(s)	38, 353, 640
Hpy8I	GTNNAC	2 cut(s)	239, 575
HpyAV	CCTTC	3 cut(s)	217, 460, 509
HpyCH4IV	ACGT	1 cut(s)	384
HpyCH4V	TGCA	1 cut(s)	502
HpyF3I	CTNAG	1 cut(s)	617
HpySE526I	ACGT	1 cut(s)	384
Hsp92II	CATG	3 cut(s)	170, 506, 587
LmnI	GCTCC	3 cut(s)	58, 226, 585
Lsp1109I	GCAGC	5 cut(s)	210, 241, 274, 594, 603
LweI	GCATC	1 cut(s)	489
MaeI	CTAG	2 cut(s)	329, 396
MaeII	ACGT	1 cut(s)	384
MbiI	CCGCTC	1 cut(s)	580
MboII	GAAGA	9 cut(s)	104, 155, 226, 295, 368, 427, 548, 552, 624
MluCI	AATT	3 cut(s)	12, 289, 481
MnlI	CCTC	8 cut(s)	19, 34, 82, 133, 325, 516, 534, 634
Mph1103I	ATGCAT	1 cut(s)	504
MroXI	GAANNNNTTC	2 cut(s)	33, 348
MseI	TTAA	2 cut(s)	72, 311
MspA1I	CMGCKG	1 cut(s)	594
MspR9I	CCNGG	1 cut(s)	56
MvaI	CCWGG	1 cut(s)	56
NcoI	CCATGG	1 cut(s)	583
NlaIII	CATG	3 cut(s)	170, 506, 587
NsiI	ATGCAT	1 cut(s)	504
NspI	RCATGY	2 cut(s)	170, 506
PaeI	GCATGC	1 cut(s)	506
PciI	ACATGT	1 cut(s)	166
PdmI	GAANNNNTTC	2 cut(s)	33, 348
PfeI	GAWTC	3 cut(s)	295, 476, 546
PkrI	GCNGC	7 cut(s)	200, 231, 264, 410, 593, 601, 609
PscI	ACATGT	1 cut(s)	166
Psp6I	CCWGG	1 cut(s)	54
PspFI	CCCAGC	1 cut(s)	594
PspGI	CCWGG	1 cut(s)	54
PvuII	CAGCTG	1 cut(s)	594
SalI	GTCGAC	1 cut(s)	573
SaqAI	TTAA	2 cut(s)	72, 311
SatI	GCNGC	7 cut(s)	199, 230, 263, 409, 592, 600, 608
ScrFI	CCNGG	1 cut(s)	56
SetI	ASST	6 cut(s)	57, 327, 387, 497, 520, 596
SfaNI	GCATC	1 cut(s)	489
SphI	GCATGC	1 cut(s)	506
Sse9I	AATT	3 cut(s)	12, 289, 481
SsiI	CCGC	3 cut(s)	408, 578, 599
SspI	AATATT	1 cut(s)	349
SspMI	CTAG	2 cut(s)	329, 396
StyD4I	CCNGG	1 cut(s)	54
StyI	CCWWGG	1 cut(s)	583
TaiI	ACGT	1 cut(s)	387
TaqI	TCGA	4 cut(s)	123, 549, 574, 641
TasI	AATT	3 cut(s)	12, 289, 481
TauI	GCSGC	2 cut(s)	411, 602
TfiI	GAWTC	3 cut(s)	295, 476, 546
Tru1I	TTAA	2 cut(s)	72, 311
Tru9I	TTAA	2 cut(s)	72, 311
TscAI	CASTG	3 cut(s)	120, 239, 346
TseI	GCWGC	5 cut(s)	198, 229, 262, 591, 607
TspDTI	ATGAA	1 cut(s)	272
TspRI	CASTG	3 cut(s)	120, 239, 346
XagI	CCTNNNNNAGG	2 cut(s)	59, 329
XapI	RAATTY	1 cut(s)	12
XceI	RCATGY	2 cut(s)	170, 506
XmiI	GTMKAC	2 cut(s)	238, 574
XmnI	GAANNNNTTC	2 cut(s)	33, 348
XspI	CTAG	2 cut(s)	329, 396
Zsp2I	ATGCAT	1 cut(s)	504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.