Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0002344

Physical Location & Seq

Genomic Coordinates Forward (+)

14871794 .. 14873962

Gene Structure 2169 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g20750.11

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGCGATAATGTCTCCGCGAGGCTCCAACAAGTTCTTGCTATCTCGCCTCGGAGCCCTAATCAAGCAACAGAGACTCGTCCATGCATTGTCTGAGGGAGGGTTGCAAGCTCAGGTTCATCCTAAAATGGTTCCGGACTGGGTGCCGGACCAAGGTTTCATTGATATGTCCAAGTGGAAAAAGGTCAACGCGAGGGTCCTTGGGATAAAACCCTCCATGATTTCGCAGCCCTCTTGGATTGTCTTGAAACTTCTTCAGGCTGAAGGATTTGAGGCCTACTTAGTGGGTGGATGTGTCAGAGACTTAATCCTCAAAAGAGTACCTAAAGACTTTGATGTGATCACTACAGCTAATCTTAAAGAGATCAAGAAGAAATTTCATCGTGCAGATATTGTTGGGCAACGGTTTCCTATATGCAGGGTGCATGTTAAAGGCACTGTCATTGAGGTATCGAGTTTTGAAACAGTGGCAAGAGATGCAGGAAAAAATAAAGAGAAAGATAGTTTATCTTGTAGGCCACCTGGCTGTGATAAGAAAGATTTCATCCGTTGGAAAAACAGCATGCATCGGGACTTCACTATTAACAGTTTATTCTTTGATCCTTTTACGAATAAGATCTATGATTATGCCAATGGAATCACGGACTTGAGGCAATTAAAGCTACGGACGCTAGGCTCTGCCAAATTGTCATTTGAAGAGGATTGTGCAAGAATCTTGCGGGGCTTAAGAATTGCTGCTCGTCTGAGCTTGTCATTTTCAAAAGAAACTGAGACTGCAATGCATAAGCTTTCTTCATCCATTTTGAGTTTGAGTAAGTCCAGAATAATGATGGAGATGGACTATATGCTTTCTTATGGAGCTGCTGAGGCGTCACTATGTTTGCTGTGGAGATTTGATATCCCGGTAACAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004652 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006276 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031124 GO:0034641 GO:0043170 GO:0043412 GO:0043631 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0070566 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

305

Amino Acids

34.44

Weight (kDa)

9.71

Isoelectric Point (pI)

46.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17580
fragaria_vesca	FvH4_1g10510 FvH4_1g10510 FvH4_1g10510 FvH4_1g10510 FvH4_1g29700
malus_domestica	MD02G1119000.v1.1 MD15G1233000.v1.1
prunus_persica	Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1
pyrus_communis	pycom02g09260 pycom02g09270 pycom15g20750
rosa_chinensis	RchiOBHm_Chr2g0097411 RchiOBHm_Chr2g0097511 RchiOBHm_Chr3g0465401
rosa_laevigata	RLG00000016724
rosa_multiflora	Rmu_sc0001060.1_g000002 Rmu_sc0004220.1_g000008 Rmu_sc0011781.1_g000006
rosa_roxburghii	Rroxscaffold_2G00144710
rosa_rugosa	Rorug02G0066800 Rorug02G0066800 Rorug02G0066800
rosa_samantha	Rh2AG113200 Rh2BG116200 Rh2BG116300 Rh2CG118200 Rh2CG118300 Rh2DG117300 Rh3BG141600 Rh3CG142700 Rh3DG142700
rosa_wichuraiana	Rw2G008870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	142
AccII	CGCG	2 cut(s)	19, 191
AccIII	TCCGGA	1 cut(s)	133
AciI	CCGC	2 cut(s)	17, 718
AclWI	GGATC	1 cut(s)	593
AcsI	RAATTY	1 cut(s)	374
AcuI	CTGAAG	2 cut(s)	239, 282
AcyI	GRCGYC	1 cut(s)	869
AfaI	GTAC	1 cut(s)	321
AfiI	CCNNNNNNNGG	1 cut(s)	152
AflII	CTTAAG	1 cut(s)	724
AgsI	TTSAA	4 cut(s)	247, 461, 695, 759
AjnI	CCWGG	1 cut(s)	520
AluBI	AGCT	6 cut(s)	110, 350, 661, 747, 787, 860
AluI	AGCT	6 cut(s)	110, 350, 661, 747, 787, 860
Alw26I	GTCTC	4 cut(s)	18, 67, 294, 764
AlwI	GGATC	1 cut(s)	593
Aor13HI	TCCGGA	1 cut(s)	133
AoxI	GGCC	2 cut(s)	273, 515
ApeKI	GCWGC	3 cut(s)	226, 734, 860
ApoI	RAATTY	1 cut(s)	374
Asp700I	GAANNNNTTC	1 cut(s)	539
AspS9I	GGNCC	2 cut(s)	148, 196
AsuC2I	CCSGG	1 cut(s)	902
AvaII	GGWCC	2 cut(s)	148, 196
BanI	GGYRCC	1 cut(s)	142
BanII	GRGCYC	1 cut(s)	58
BbvCI	CCTCAGC	1 cut(s)	864
BbvI	GCAGC	3 cut(s)	238, 721, 847
BccI	CCATC	2 cut(s)	823, 829
BciT130I	CCWGG	1 cut(s)	522
BclI	TGATCA	1 cut(s)	339
BcnI	CCSGG	1 cut(s)	902
BcoDI	GTCTC	4 cut(s)	18, 67, 294, 764
BfaI	CTAG	1 cut(s)	671
BfmI	CTRYAG	1 cut(s)	345
BfrI	CTTAAG	1 cut(s)	724
BglII	AGATCT	1 cut(s)	615
BisI	GCNGC	3 cut(s)	227, 735, 861
BlsI	GCNGC	3 cut(s)	228, 736, 862
Bme1390I	CCNGG	2 cut(s)	522, 902
Bme18I	GGWCC	2 cut(s)	148, 196
BmgT120I	GGNCC	2 cut(s)	148, 196
BmiI	GGNNCC	5 cut(s)	25, 55, 132, 144, 197
BmrFI	CCNGG	2 cut(s)	522, 902
BmrI	ACTGGG	1 cut(s)	148
BmsI	GCATC	2 cut(s)	466, 574
BmuI	ACTGGG	1 cut(s)	148
Bpu10I	CCTNAGC	2 cut(s)	111, 864
BpuEI	CTTGAG	1 cut(s)	667
BpuMI	CCSGG	1 cut(s)	902
BsaHI	GRCGYC	1 cut(s)	869
BsaJI	CCNNGG	3 cut(s)	49, 151, 199
BsaWI	WCCGGW	1 cut(s)	133
Bsc4I	CCNNNNNNNGG	1 cut(s)	152
Bse1I	ACTGG	1 cut(s)	143
Bse3DI	GCAATG	1 cut(s)	783
BseAI	TCCGGA	1 cut(s)	133
BseBI	CCWGG	1 cut(s)	522
BseDI	CCNNGG	3 cut(s)	49, 151, 199
BseGI	GGATG	4 cut(s)	118, 296, 543, 794
BseLI	CCNNNNNNNGG	1 cut(s)	152
BseMI	GCAATG	1 cut(s)	783
BseMII	CTCAG	5 cut(s)	84, 125, 734, 759, 855
BseNI	ACTGG	1 cut(s)	143
BseXI	GCAGC	3 cut(s)	238, 721, 847
BsgI	GTGCAG	1 cut(s)	405
Bsh1236I	CGCG	2 cut(s)	19, 191
BshFI	GGCC	2 cut(s)	275, 517
BshNI	GGYRCC	1 cut(s)	142
BsiSI	CCGG	3 cut(s)	134, 146, 902
BslFI	GGGAC	1 cut(s)	584
BslI	CCNNNNNNNGG	1 cut(s)	152
BsmAI	GTCTC	4 cut(s)	18, 67, 294, 764
BsmFI	GGGAC	1 cut(s)	584
BsnI	GGCC	2 cut(s)	275, 517
Bsp1286I	GDGCHC	1 cut(s)	58
Bsp13I	TCCGGA	1 cut(s)	133
Bsp143I	GATC	4 cut(s)	339, 363, 598, 615
BspACI	CCGC	2 cut(s)	17, 718
BspANI	GGCC	2 cut(s)	275, 517
BspCNI	CTCAG	5 cut(s)	85, 124, 735, 760, 856
BspEI	TCCGGA	1 cut(s)	133
BspFNI	CGCG	2 cut(s)	19, 191
BspLI	GGNNCC	5 cut(s)	25, 55, 132, 144, 197
BspPI	GGATC	1 cut(s)	593
BspT107I	GGYRCC	1 cut(s)	142
BspTI	CTTAAG	1 cut(s)	724
BsrDI	GCAATG	1 cut(s)	783
BsrI	ACTGG	1 cut(s)	143
BssECI	CCNNGG	3 cut(s)	49, 151, 199
BssMI	GATC	4 cut(s)	339, 363, 598, 615
BssNI	GRCGYC	1 cut(s)	869
BssT1I	CCWWGG	2 cut(s)	151, 199
Bst2UI	CCWGG	1 cut(s)	522
Bst4CI	ACNGT	4 cut(s)	405, 439, 466, 587
Bst6I	CTCTTC	1 cut(s)	690
BstACI	GRCGYC	1 cut(s)	869
BstAFI	CTTAAG	1 cut(s)	724
BstAPI	GCANNNNNTGC	1 cut(s)	476
BstC8I	GCNNGC	2 cut(s)	108, 563
BstDEI	CTNAG	6 cut(s)	93, 111, 280, 743, 768, 864
BstF5I	GGATG	4 cut(s)	118, 296, 543, 794
BstFNI	CGCG	2 cut(s)	19, 191
BstKTI	GATC	4 cut(s)	342, 366, 601, 618
BstMAI	GTCTC	4 cut(s)	18, 67, 294, 764
BstMBI	GATC	4 cut(s)	339, 363, 598, 615
BstMWI	GCNNNNNNNGC	4 cut(s)	476, 658, 667, 866
BstNI	CCWGG	1 cut(s)	522
BstNSI	RCATGY	2 cut(s)	428, 565
BstSCI	CCNGG	2 cut(s)	520, 900
BstSFI	CTRYAG	1 cut(s)	345
BstUI	CGCG	2 cut(s)	19, 191
BstV1I	GCAGC	3 cut(s)	238, 721, 847
BstX2I	RGATCY	1 cut(s)	615
BstYI	RGATCY	1 cut(s)	615
BsuRI	GGCC	2 cut(s)	275, 517
BtsCI	GGATG	4 cut(s)	118, 296, 543, 794
BtsIMutI	CAGTG	2 cut(s)	435, 471
Cac8I	GCNNGC	2 cut(s)	108, 563
Cfr13I	GGNCC	2 cut(s)	148, 196
CseI	GACGC	2 cut(s)	676, 858
Csp6I	GTAC	1 cut(s)	320
CviAII	CATG	4 cut(s)	83, 217, 425, 562
CviQI	GTAC	1 cut(s)	320
DdeI	CTNAG	6 cut(s)	93, 111, 280, 743, 768, 864
DpnI	GATC	4 cut(s)	341, 365, 600, 617
DpnII	GATC	4 cut(s)	339, 363, 598, 615
Eam1104I	CTCTTC	1 cut(s)	690
EarI	CTCTTC	1 cut(s)	690
Eco130I	CCWWGG	2 cut(s)	151, 199
Eco147I	AGGCCT	1 cut(s)	275
Eco24I	GRGCYC	1 cut(s)	58
Eco32I	GATATC	1 cut(s)	898
Eco47I	GGWCC	2 cut(s)	148, 196
Eco57I	CTGAAG	2 cut(s)	239, 282
EcoO109I	RGGNCCY	1 cut(s)	196
EcoRII	CCWGG	1 cut(s)	520
EcoRV	GATATC	1 cut(s)	898
EcoT14I	CCWWGG	2 cut(s)	151, 199
EcoT22I	ATGCAT	3 cut(s)	88, 567, 783
EcoT38I	GRGCYC	1 cut(s)	58
ErhI	CCWWGG	2 cut(s)	151, 199
FaeI	CATG	4 cut(s)	86, 220, 428, 565
FaqI	GGGAC	1 cut(s)	584
FatI	CATG	4 cut(s)	82, 216, 424, 561
FauI	CCCGC	1 cut(s)	711
FbaI	TGATCA	1 cut(s)	339
Fnu4HI	GCNGC	3 cut(s)	227, 735, 861
FokI	GGATG	4 cut(s)	105, 303, 530, 781
FriOI	GRGCYC	1 cut(s)	58
Fsp4HI	GCNGC	3 cut(s)	227, 735, 861
FspBI	CTAG	1 cut(s)	671
GluI	GCNGC	3 cut(s)	227, 735, 861
HaeIII	GGCC	2 cut(s)	275, 517
HapII	CCGG	3 cut(s)	134, 146, 902
HgaI	GACGC	2 cut(s)	676, 858
Hin1I	GRCGYC	1 cut(s)	869
Hin1II	CATG	4 cut(s)	86, 220, 428, 565
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HindIII	AAGCTT	1 cut(s)	785
HinfI	GANTC	3 cut(s)	75, 636, 711
HpaII	CCGG	3 cut(s)	134, 146, 902
Hpy166II	GTNNAC	1 cut(s)	187
Hpy188I	TCNGA	4 cut(s)	53, 94, 299, 744
Hpy188III	TCNNGA	5 cut(s)	134, 244, 367, 569, 819
Hpy8I	GTNNAC	1 cut(s)	187
HpyAV	CCTTC	1 cut(s)	257
HpyCH4III	ACNGT	4 cut(s)	405, 439, 466, 587
HpyF10VI	GCNNNNNNNGC	4 cut(s)	476, 658, 667, 866
HpyF3I	CTNAG	6 cut(s)	93, 111, 280, 743, 768, 864
Hsp92I	GRCGYC	1 cut(s)	869
Hsp92II	CATG	4 cut(s)	86, 220, 428, 565
Kpn2I	TCCGGA	1 cut(s)	133
Ksp22I	TGATCA	1 cut(s)	339
Kzo9I	GATC	4 cut(s)	339, 363, 598, 615
LmnI	GCTCC	3 cut(s)	29, 53, 857
Lsp1109I	GCAGC	3 cut(s)	238, 721, 847
LweI	GCATC	2 cut(s)	466, 574
MaeI	CTAG	1 cut(s)	671
MaeIII	GTNAC	2 cut(s)	870, 904
MalI	GATC	4 cut(s)	341, 365, 600, 617
MboI	GATC	4 cut(s)	339, 363, 598, 615
MboII	GAAGA	4 cut(s)	245, 382, 707, 783
MflI	RGATCY	1 cut(s)	615
MhlI	GDGCHC	1 cut(s)	58
MluCI	AATT	4 cut(s)	374, 653, 683, 729
MlyI	GAGTC	1 cut(s)	69
MmeI	TCCRAC	2 cut(s)	51, 530
Mph1103I	ATGCAT	3 cut(s)	88, 567, 783
MroI	TCCGGA	1 cut(s)	133
MroXI	GAANNNNTTC	1 cut(s)	539
MseI	TTAA	6 cut(s)	305, 357, 429, 582, 656, 725
MslI	CAYNNNNRTG	1 cut(s)	164
MspCI	CTTAAG	1 cut(s)	724
MspI	CCGG	3 cut(s)	134, 146, 902
MspR9I	CCNGG	2 cut(s)	522, 902
MvaI	CCWGG	1 cut(s)	522
MvnI	CGCG	2 cut(s)	19, 191
MwoI	GCNNNNNNNGC	4 cut(s)	476, 658, 667, 866
NciI	CCSGG	1 cut(s)	902
NdeII	GATC	4 cut(s)	339, 363, 598, 615
NlaIII	CATG	4 cut(s)	86, 220, 428, 565
NlaIV	GGNNCC	5 cut(s)	25, 55, 132, 144, 197
NmuCI	GTSAC	1 cut(s)	870
NsiI	ATGCAT	3 cut(s)	88, 567, 783
NspI	RCATGY	2 cut(s)	428, 565
PaeI	GCATGC	1 cut(s)	565
PceI	AGGCCT	1 cut(s)	275
PdmI	GAANNNNTTC	1 cut(s)	539
PfeI	GAWTC	2 cut(s)	636, 711
PkrI	GCNGC	3 cut(s)	228, 736, 862
PleI	GAGTC	1 cut(s)	69
PpsI	GAGTC	1 cut(s)	69
PpuMI	RGGWCCY	1 cut(s)	196
Psp5II	RGGWCCY	1 cut(s)	196
Psp6I	CCWGG	1 cut(s)	520
PspGI	CCWGG	1 cut(s)	520
PspN4I	GGNNCC	5 cut(s)	25, 55, 132, 144, 197
PspPI	GGNCC	2 cut(s)	148, 196
PspPPI	RGGWCCY	1 cut(s)	196
PsuI	RGATCY	1 cut(s)	615
RsaI	GTAC	1 cut(s)	321
RsaNI	GTAC	1 cut(s)	320
RseI	CAYNNNNRTG	1 cut(s)	164
SaqAI	TTAA	6 cut(s)	305, 357, 429, 582, 656, 725
SatI	GCNGC	3 cut(s)	227, 735, 861
Sau3AI	GATC	4 cut(s)	339, 363, 598, 615
Sau96I	GGNCC	2 cut(s)	148, 196
SchI	GAGTC	1 cut(s)	69
ScrFI	CCNGG	2 cut(s)	522, 902
SduI	GDGCHC	1 cut(s)	58
SfaNI	GCATC	2 cut(s)	466, 574
SfcI	CTRYAG	1 cut(s)	345
SinI	GGWCC	2 cut(s)	148, 196
SmiMI	CAYNNNNRTG	1 cut(s)	164
SmlI	CTYRAG	2 cut(s)	646, 724
SmoI	CTYRAG	2 cut(s)	646, 724
SphI	GCATGC	1 cut(s)	565
Sse9I	AATT	4 cut(s)	374, 653, 683, 729
SseBI	AGGCCT	1 cut(s)	275
SsiI	CCGC	2 cut(s)	17, 718
SspMI	CTAG	1 cut(s)	671
StuI	AGGCCT	1 cut(s)	275
StyD4I	CCNGG	2 cut(s)	520, 900
StyI	CCWWGG	2 cut(s)	151, 199
TaaI	ACNGT	4 cut(s)	405, 439, 466, 587
TaqI	TCGA	1 cut(s)	452
TasI	AATT	4 cut(s)	374, 653, 683, 729
TfiI	GAWTC	2 cut(s)	636, 711
Tru1I	TTAA	6 cut(s)	305, 357, 429, 582, 656, 725
Tru9I	TTAA	6 cut(s)	305, 357, 429, 582, 656, 725
TscAI	CASTG	2 cut(s)	442, 471
TseFI	GTSAC	1 cut(s)	870
TseI	GCWGC	3 cut(s)	226, 734, 860
Tsp45I	GTSAC	1 cut(s)	870
TspDTI	ATGAA	5 cut(s)	107, 148, 368, 532, 783
TspGWI	ACGGA	3 cut(s)	536, 656, 679
TspRI	CASTG	2 cut(s)	442, 471
Vha464I	CTTAAG	1 cut(s)	724
VpaK11BI	GGWCC	2 cut(s)	148, 196
XapI	RAATTY	1 cut(s)	374
XceI	RCATGY	2 cut(s)	428, 565
XcmI	CCANNNNNNNNNTGG	1 cut(s)	826
XmnI	GAANNNNTTC	1 cut(s)	539
XspI	CTAG	1 cut(s)	671
Zsp2I	ATGCAT	3 cut(s)	88, 567, 783

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.