Belongs to the tRNA nucleotidyltransferase poly(A) polymerase family
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G17580 |
| fragaria_vesca | FvH4_1g10510 FvH4_1g10510 FvH4_1g10510 FvH4_1g10510 FvH4_1g29700 |
| malus_domestica | MD02G1119000.v1.1 MD15G1233000.v1.1 |
| prunus_persica | Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 |
| pyrus_communis | pycom02g09260 pycom02g09270 pycom15g20750 |
| rosa_chinensis | RchiOBHm_Chr2g0097411 RchiOBHm_Chr2g0097511 RchiOBHm_Chr3g0465401 |
| rosa_laevigata | RLG00000016724 |
| rosa_multiflora | Rmu_sc0001060.1_g000002 Rmu_sc0004220.1_g000008 Rmu_sc0011781.1_g000006 |
| rosa_roxburghii | Rroxscaffold_2G00144710 |
| rosa_rugosa | Rorug02G0066800 Rorug02G0066800 Rorug02G0066800 |
| rosa_samantha | Rh2AG113200 Rh2BG116200 Rh2BG116300 Rh2CG118200 Rh2CG118300 Rh2DG117300 Rh3BG141600 Rh3CG142700 Rh3DG142700 |
| rosa_wichuraiana | Rw2G008870 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1590 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2190 |
| Acc16I | TGCGCA | 1 cut(s) | 700 |
| Acc36I | ACCTGC | 1 cut(s) | 1590 |
| AccB1I | GGYRCC | 1 cut(s) | 130 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1041, 1349 |
| AccI | GTMKAC | 2 cut(s) | 2098, 2176 |
| AciI | CCGC | 4 cut(s) | 658, 712, 1287, 2172 |
| AclI | AACGTT | 1 cut(s) | 1596 |
| AclWI | GGATC | 3 cut(s) | 301, 587, 1187 |
| AcsI | RAATTY | 6 cut(s) | 249, 900, 1154, 1217, 1395, 1808 |
| AcuI | CTGAAG | 6 cut(s) | 114, 239, 1194, 1401, 1668, 1697 |
| AfaI | GTAC | 3 cut(s) | 1194, 1236, 1365 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 152, 507, 1041, 1349, 1588, 1879 |
| AflIII | ACRYGT | 1 cut(s) | 2016 |
| AgsI | TTSAA | 9 cut(s) | 272, 461, 689, 832, 1316, 1684, 1745, 1903, 1986 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 643 |
| AhlI | ACTAGT | 1 cut(s) | 1072 |
| AjnI | CCWGG | 2 cut(s) | 16, 514 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1853, 1885 |
| Alw26I | GTCTC | 4 cut(s) | 67, 758, 1158, 2198 |
| AlwI | GGATC | 3 cut(s) | 301, 587, 1187 |
| AoxI | GGCC | 1 cut(s) | 509 |
| ApeKI | GCWGC | 7 cut(s) | 156, 655, 728, 854, 920, 1585, 1918 |
| ApoI | RAATTY | 6 cut(s) | 249, 900, 1154, 1217, 1395, 1808 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 533, 986, 1560 |
| AspLEI | GCGC | 1 cut(s) | 701 |
| AspS9I | GGNCC | 1 cut(s) | 645 |
| AsuHPI | GGTGA | 2 cut(s) | 1055, 1423 |
| AvaII | GGWCC | 1 cut(s) | 645 |
| AxyI | CCTNAGG | 1 cut(s) | 324 |
| BanI | GGYRCC | 1 cut(s) | 130 |
| BbsI | GAAGAC | 3 cut(s) | 406, 1910, 2070 |
| BbvI | GCAGC | 7 cut(s) | 143, 642, 715, 841, 932, 1572, 1905 |
| BccI | CCATC | 2 cut(s) | 817, 871 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 362, 396 |
| BciT130I | CCWGG | 2 cut(s) | 18, 516 |
| BciVI | GTATCC | 1 cut(s) | 1990 |
| BclI | TGATCA | 2 cut(s) | 339, 2043 |
| BcoDI | GTCTC | 4 cut(s) | 67, 758, 1158, 2198 |
| BcuI | ACTAGT | 1 cut(s) | 1072 |
| BfaI | CTAG | 5 cut(s) | 993, 1073, 1274, 2112, 2190 |
| BfmI | CTRYAG | 3 cut(s) | 345, 1586, 1919 |
| BfuAI | ACCTGC | 1 cut(s) | 1590 |
| BfuI | GTATCC | 1 cut(s) | 1990 |
| BglII | AGATCT | 2 cut(s) | 609, 1200 |
| BisI | GCNGC | 7 cut(s) | 157, 656, 729, 855, 921, 1586, 1919 |
| BlpI | GCTNAGC | 1 cut(s) | 858 |
| BlsI | GCNGC | 7 cut(s) | 158, 657, 730, 856, 922, 1587, 1920 |
| BmcAI | AGTACT | 1 cut(s) | 1236 |
| Bme1390I | CCNGG | 2 cut(s) | 18, 516 |
| Bme18I | GGWCC | 1 cut(s) | 645 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 643 |
| BmgT120I | GGNCC | 1 cut(s) | 645 |
| BmiI | GGNNCC | 4 cut(s) | 25, 132, 144, 197 |
| BmrFI | CCNGG | 2 cut(s) | 18, 516 |
| BmrI | ACTGGG | 1 cut(s) | 1249 |
| BmsI | GCATC | 4 cut(s) | 568, 762, 1081, 1884 |
| BmuI | ACTGGG | 1 cut(s) | 1249 |
| BpiI | GAAGAC | 3 cut(s) | 406, 1910, 2070 |
| BpmI | CTGGAG | 1 cut(s) | 39 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 858 |
| BpuEI | CTTGAG | 1 cut(s) | 661 |
| Bsa29I | ATCGAT | 1 cut(s) | 1725 |
| BsaJI | CCNNGG | 3 cut(s) | 16, 199, 216 |
| BsaWI | WCCGGW | 1 cut(s) | 1819 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 152, 507, 1041, 1349, 1588, 1879 |
| Bse1I | ACTGG | 2 cut(s) | 453, 1255 |
| Bse21I | CCTNAGG | 1 cut(s) | 324 |
| BseBI | CCWGG | 2 cut(s) | 18, 516 |
| BseCI | ATCGAT | 1 cut(s) | 1725 |
| BseDI | CCNNGG | 3 cut(s) | 16, 199, 216 |
| BseGI | GGATG | 4 cut(s) | 296, 537, 788, 1867 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 152, 507, 1041, 1349, 1588, 1879 |
| BseMII | CTCAG | 9 cut(s) | 64, 728, 753, 849, 974, 1020, 1188, 1775, 1848 |
| BseNI | ACTGG | 2 cut(s) | 453, 1255 |
| BseRI | GAGGAG | 3 cut(s) | 1841, 2066, 2144 |
| BseXI | GCAGC | 7 cut(s) | 143, 642, 715, 841, 932, 1572, 1905 |
| BsgI | GTGCAG | 1 cut(s) | 405 |
| BshFI | GGCC | 1 cut(s) | 511 |
| BshNI | GGYRCC | 1 cut(s) | 130 |
| BshVI | ATCGAT | 1 cut(s) | 1725 |
| BsiSI | CCGG | 1 cut(s) | 1820 |
| BslFI | GGGAC | 1 cut(s) | 578 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 152, 507, 1041, 1349, 1588, 1879 |
| BsmAI | GTCTC | 4 cut(s) | 67, 758, 1158, 2198 |
| BsmFI | GGGAC | 1 cut(s) | 578 |
| BsnI | GGCC | 1 cut(s) | 511 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 858 |
| Bsp19I | CCATGG | 1 cut(s) | 216 |
| BspACI | CCGC | 4 cut(s) | 658, 712, 1287, 2172 |
| BspANI | GGCC | 1 cut(s) | 511 |
| BspCNI | CTCAG | 9 cut(s) | 63, 729, 754, 850, 973, 1021, 1189, 1774, 1849 |
| BspDI | ATCGAT | 1 cut(s) | 1725 |
| BspHI | TCATGA | 1 cut(s) | 1129 |
| BspLI | GGNNCC | 4 cut(s) | 25, 132, 144, 197 |
| BspMAI | CTGCAG | 2 cut(s) | 1590, 1923 |
| BspMI | ACCTGC | 1 cut(s) | 1590 |
| BspPI | GGATC | 3 cut(s) | 301, 587, 1187 |
| BspT107I | GGYRCC | 1 cut(s) | 130 |
| BsrI | ACTGG | 2 cut(s) | 453, 1255 |
| BssECI | CCNNGG | 3 cut(s) | 16, 199, 216 |
| BssT1I | CCWWGG | 2 cut(s) | 199, 216 |
| Bst2UI | CCWGG | 2 cut(s) | 18, 516 |
| Bst4CI | ACNGT | 4 cut(s) | 466, 581, 1053, 1535 |
| Bst6I | CTCTTC | 5 cut(s) | 684, 1377, 1436, 1796, 1818 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 476 |
| BstC8I | GCNNGC | 4 cut(s) | 108, 509, 557, 918 |
| BstDSI | CCRYGG | 1 cut(s) | 216 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 150, 1586 |
| BstF5I | GGATG | 4 cut(s) | 296, 537, 788, 1867 |
| BstHHI | GCGC | 1 cut(s) | 701 |
| BstMAI | GTCTC | 4 cut(s) | 67, 758, 1158, 2198 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 476, 1295 |
| BstNI | CCWGG | 2 cut(s) | 18, 516 |
| BstNSI | RCATGY | 5 cut(s) | 428, 479, 559, 920, 2020 |
| BstSCI | CCNGG | 2 cut(s) | 16, 514 |
| BstSFI | CTRYAG | 3 cut(s) | 345, 1586, 1919 |
| BstV1I | GCAGC | 7 cut(s) | 143, 642, 715, 841, 932, 1572, 1905 |
| BstV2I | GAAGAC | 3 cut(s) | 406, 1910, 2070 |
| BstX2I | RGATCY | 2 cut(s) | 609, 1200 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 631, 1469 |
| BstYI | RGATCY | 2 cut(s) | 609, 1200 |
| Bsu15I | ATCGAT | 1 cut(s) | 1725 |
| Bsu36I | CCTNAGG | 1 cut(s) | 324 |
| BsuI | GTATCC | 1 cut(s) | 1990 |
| BsuRI | GGCC | 1 cut(s) | 511 |
| BsuTUI | ATCGAT | 1 cut(s) | 1725 |
| BtgI | CCRYGG | 1 cut(s) | 216 |
| BtgZI | GCGATG | 1 cut(s) | 785 |
| BtsCI | GGATG | 4 cut(s) | 296, 537, 788, 1867 |
| BtsI | GCAGTG | 1 cut(s) | 2131 |
| BtsIMutI | CAGTG | 4 cut(s) | 471, 1540, 2053, 2131 |
| BveI | ACCTGC | 1 cut(s) | 1590 |
| Cac8I | GCNNGC | 4 cut(s) | 108, 509, 557, 918 |
| CciI | TCATGA | 1 cut(s) | 1129 |
| CfoI | GCGC | 1 cut(s) | 701 |
| Cfr13I | GGNCC | 1 cut(s) | 645 |
| ClaI | ATCGAT | 1 cut(s) | 1725 |
| Csp6I | GTAC | 3 cut(s) | 1193, 1235, 1364 |
| CviQI | GTAC | 3 cut(s) | 1193, 1235, 1364 |
| DraI | TTTAAA | 3 cut(s) | 798, 1222, 1402 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2190 |
| DriI | GACNNNNNGTC | 1 cut(s) | 643 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2190 |
| Eam1104I | CTCTTC | 5 cut(s) | 684, 1377, 1436, 1796, 1818 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 643 |
| EarI | CTCTTC | 5 cut(s) | 684, 1377, 1436, 1796, 1818 |
| Eco130I | CCWWGG | 2 cut(s) | 199, 216 |
| Eco32I | GATATC | 1 cut(s) | 1331 |
| Eco47I | GGWCC | 1 cut(s) | 645 |
| Eco57I | CTGAAG | 6 cut(s) | 114, 239, 1194, 1401, 1668, 1697 |
| Eco81I | CCTNAGG | 1 cut(s) | 324 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 150, 1586 |
| EcoO109I | RGGNCCY | 1 cut(s) | 645 |
| EcoRII | CCWGG | 2 cut(s) | 16, 514 |
| EcoRV | GATATC | 1 cut(s) | 1331 |
| EcoT14I | CCWWGG | 2 cut(s) | 199, 216 |
| EcoT22I | ATGCAT | 3 cut(s) | 88, 561, 777 |
| ErhI | CCWWGG | 2 cut(s) | 199, 216 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1080, 1112, 1883, 1915 |
| FaqI | GGGAC | 1 cut(s) | 578 |
| FauI | CCCGC | 1 cut(s) | 705 |
| FbaI | TGATCA | 2 cut(s) | 339, 2043 |
| FblI | GTMKAC | 2 cut(s) | 2098, 2176 |
| Fnu4HI | GCNGC | 7 cut(s) | 157, 656, 729, 855, 921, 1586, 1919 |
| FokI | GGATG | 4 cut(s) | 303, 524, 775, 1874 |
| Fsp4HI | GCNGC | 7 cut(s) | 157, 656, 729, 855, 921, 1586, 1919 |
| FspBI | CTAG | 5 cut(s) | 993, 1073, 1274, 2112, 2190 |
| FspI | TGCGCA | 1 cut(s) | 700 |
| GlaI | GCGC | 1 cut(s) | 700 |
| GluI | GCNGC | 7 cut(s) | 157, 656, 729, 855, 921, 1586, 1919 |
| GsuI | CTGGAG | 1 cut(s) | 39 |
| HaeIII | GGCC | 1 cut(s) | 511 |
| HapII | CCGG | 1 cut(s) | 1820 |
| HhaI | GCGC | 1 cut(s) | 701 |
| Hin6I | GCGC | 1 cut(s) | 699 |
| HinP1I | GCGC | 1 cut(s) | 699 |
| HincII | GTYRAC | 1 cut(s) | 1107 |
| HindII | GTYRAC | 1 cut(s) | 1107 |
| HpaII | CCGG | 1 cut(s) | 1820 |
| HphI | GGTGA | 2 cut(s) | 1055, 1423 |
| Hpy166II | GTNNAC | 6 cut(s) | 637, 1035, 1107, 1414, 2099, 2177 |
| Hpy8I | GTNNAC | 6 cut(s) | 637, 1035, 1107, 1414, 2099, 2177 |
| HpyAV | CCTTC | 7 cut(s) | 89, 257, 1035, 1139, 1169, 1431, 1546 |
| HpyCH4III | ACNGT | 4 cut(s) | 466, 581, 1053, 1535 |
| HpyCH4IV | ACGT | 3 cut(s) | 167, 662, 1596 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 476, 1295 |
| HpySE526I | ACGT | 3 cut(s) | 167, 662, 1596 |
| HspAI | GCGC | 1 cut(s) | 699 |
| Ksp22I | TGATCA | 2 cut(s) | 339, 2043 |
| LmnI | GCTCC | 3 cut(s) | 29, 851, 1849 |
| Lsp1109I | GCAGC | 7 cut(s) | 143, 642, 715, 841, 932, 1572, 1905 |
| LweI | GCATC | 4 cut(s) | 568, 762, 1081, 1884 |
| MaeI | CTAG | 5 cut(s) | 993, 1073, 1274, 2112, 2190 |
| MaeII | ACGT | 3 cut(s) | 167, 662, 1596 |
| MaeIII | GTNAC | 3 cut(s) | 1815, 2074, 2106 |
| MflI | RGATCY | 2 cut(s) | 609, 1200 |
| MlyI | GAGTC | 4 cut(s) | 69, 131, 1040, 1315 |
| MmeI | TCCRAC | 6 cut(s) | 165, 376, 524, 783, 1027, 1551 |
| Mph1103I | ATGCAT | 3 cut(s) | 88, 561, 777 |
| MroXI | GAANNNNTTC | 3 cut(s) | 533, 986, 1560 |
| MslI | CAYNNNNRTG | 1 cut(s) | 446 |
| MspI | CCGG | 1 cut(s) | 1820 |
| MspR9I | CCNGG | 2 cut(s) | 18, 516 |
| MvaI | CCWGG | 2 cut(s) | 18, 516 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 476, 1295 |
| NcoI | CCATGG | 1 cut(s) | 216 |
| NlaIV | GGNNCC | 4 cut(s) | 25, 132, 144, 197 |
| NsbI | TGCGCA | 1 cut(s) | 700 |
| NsiI | ATGCAT | 3 cut(s) | 88, 561, 777 |
| NspI | RCATGY | 5 cut(s) | 428, 479, 559, 920, 2020 |
| PaeI | GCATGC | 2 cut(s) | 559, 920 |
| PagI | TCATGA | 1 cut(s) | 1129 |
| PaqCI | CACCTGC | 1 cut(s) | 1590 |
| PciI | ACATGT | 1 cut(s) | 2016 |
| PdmI | GAANNNNTTC | 3 cut(s) | 533, 986, 1560 |
| PfeI | GAWTC | 7 cut(s) | 188, 405, 497, 705, 1277, 1316, 2134 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1041, 1349 |
| PkrI | GCNGC | 7 cut(s) | 158, 657, 730, 856, 922, 1587, 1920 |
| PleI | GAGTC | 4 cut(s) | 69, 131, 1039, 1314 |
| PpsI | GAGTC | 4 cut(s) | 69, 131, 1039, 1314 |
| PpuMI | RGGWCCY | 1 cut(s) | 645 |
| PscI | ACATGT | 1 cut(s) | 2016 |
| Psp1406I | AACGTT | 1 cut(s) | 1596 |
| Psp5II | RGGWCCY | 1 cut(s) | 645 |
| Psp6I | CCWGG | 2 cut(s) | 16, 514 |
| PspGI | CCWGG | 2 cut(s) | 16, 514 |
| PspN4I | GGNNCC | 4 cut(s) | 25, 132, 144, 197 |
| PspPI | GGNCC | 1 cut(s) | 645 |
| PspPPI | RGGWCCY | 1 cut(s) | 645 |
| PstI | CTGCAG | 2 cut(s) | 1590, 1923 |
| PsuI | RGATCY | 2 cut(s) | 609, 1200 |
| RsaI | GTAC | 3 cut(s) | 1194, 1236, 1365 |
| RsaNI | GTAC | 3 cut(s) | 1193, 1235, 1364 |
| RseI | CAYNNNNRTG | 1 cut(s) | 446 |
| SatI | GCNGC | 7 cut(s) | 157, 656, 729, 855, 921, 1586, 1919 |
| Sau96I | GGNCC | 1 cut(s) | 645 |
| ScaI | AGTACT | 1 cut(s) | 1236 |
| SchI | GAGTC | 4 cut(s) | 69, 131, 1040, 1315 |
| ScrFI | CCNGG | 2 cut(s) | 18, 516 |
| SfaNI | GCATC | 4 cut(s) | 568, 762, 1081, 1884 |
| SfcI | CTRYAG | 3 cut(s) | 345, 1586, 1919 |
| SinI | GGWCC | 1 cut(s) | 645 |
| SmiI | ATTTAAAT | 1 cut(s) | 1222 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 446 |
| SmlI | CTYRAG | 1 cut(s) | 640 |
| SmoI | CTYRAG | 1 cut(s) | 640 |
| SpeI | ACTAGT | 1 cut(s) | 1072 |
| SphI | GCATGC | 2 cut(s) | 559, 920 |
| SsiI | CCGC | 4 cut(s) | 658, 712, 1287, 2172 |
| SspMI | CTAG | 5 cut(s) | 993, 1073, 1274, 2112, 2190 |
| StyD4I | CCNGG | 2 cut(s) | 16, 514 |
| StyI | CCWWGG | 2 cut(s) | 199, 216 |
| SwaI | ATTTAAAT | 1 cut(s) | 1222 |
| TaaI | ACNGT | 4 cut(s) | 466, 581, 1053, 1535 |
| TaiI | ACGT | 3 cut(s) | 170, 665, 1599 |
| TaqI | TCGA | 6 cut(s) | 191, 444, 934, 1021, 1725, 2182 |
| TatI | WGTACW | 1 cut(s) | 1234 |
| TfiI | GAWTC | 7 cut(s) | 188, 405, 497, 705, 1277, 1316, 2134 |
| TscAI | CASTG | 4 cut(s) | 471, 1540, 2053, 2131 |
| TseI | GCWGC | 7 cut(s) | 156, 655, 728, 854, 920, 1585, 1918 |
| TspDTI | ATGAA | 7 cut(s) | 107, 526, 777, 965, 995, 1146, 1544 |
| TspGWI | ACGGA | 2 cut(s) | 530, 2094 |
| TspRI | CASTG | 4 cut(s) | 471, 1540, 2053, 2131 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1041, 1349 |
| VpaK11BI | GGWCC | 1 cut(s) | 645 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 150, 1586 |
| XapI | RAATTY | 6 cut(s) | 249, 900, 1154, 1217, 1395, 1808 |
| XceI | RCATGY | 5 cut(s) | 428, 479, 559, 920, 2020 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 631, 799, 820 |
| XmiI | GTMKAC | 2 cut(s) | 2098, 2176 |
| XmnI | GAANNNNTTC | 3 cut(s) | 533, 986, 1560 |
| XspI | CTAG | 5 cut(s) | 993, 1073, 1274, 2112, 2190 |
| ZrmI | AGTACT | 1 cut(s) | 1236 |
| Zsp2I | ATGCAT | 3 cut(s) | 88, 561, 777 |