Belongs to the tRNA nucleotidyltransferase poly(A) polymerase family
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G17580 |
| fragaria_vesca | FvH4_1g10510 FvH4_1g10510 FvH4_1g10510 FvH4_1g10510 FvH4_1g29700 |
| malus_domestica | MD02G1119000.v1.1 MD15G1233000.v1.1 |
| prunus_persica | Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 |
| pyrus_communis | pycom02g09260 pycom02g09270 pycom15g20750 |
| rosa_chinensis | RchiOBHm_Chr2g0097411 RchiOBHm_Chr2g0097511 RchiOBHm_Chr3g0465401 |
| rosa_laevigata | RLG00000016724 |
| rosa_multiflora | Rmu_sc0001060.1_g000002 Rmu_sc0004220.1_g000008 Rmu_sc0011781.1_g000006 |
| rosa_roxburghii | Rroxscaffold_2G00144710 |
| rosa_rugosa | Rorug02G0066800 Rorug02G0066800 Rorug02G0066800 |
| rosa_samantha | Rh2AG113200 Rh2BG116200 Rh2BG116300 Rh2CG118200 Rh2CG118300 Rh2DG117300 Rh3BG141600 Rh3CG142700 Rh3DG142700 |
| rosa_wichuraiana | Rw2G008870 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 694 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1340 |
| AciI | CCGC | 5 cut(s) | 109, 279, 535, 629, 666 |
| AclWI | GGATC | 3 cut(s) | 292, 581, 633 |
| AcoI | YGGCCR | 1 cut(s) | 1401 |
| AcsI | RAATTY | 7 cut(s) | 309, 699, 741, 878, 955, 1386, 1550 |
| AfaI | GTAC | 2 cut(s) | 1356, 1461 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 20, 118, 142, 1340 |
| AflII | CTTAAG | 2 cut(s) | 347, 712 |
| AflIII | ACRYGT | 1 cut(s) | 156 |
| AgsI | TTSAA | 7 cut(s) | 263, 452, 739, 747, 883, 1232, 1540 |
| AluBI | AGCT | 6 cut(s) | 341, 649, 764, 848, 1040, 1228 |
| AluI | AGCT | 6 cut(s) | 341, 649, 764, 848, 1040, 1228 |
| Alw21I | GWGCWC | 1 cut(s) | 379 |
| Alw26I | GTCTC | 5 cut(s) | 67, 552, 752, 1149, 1478 |
| Alw44I | GTGCAC | 1 cut(s) | 375 |
| AlwI | GGATC | 3 cut(s) | 292, 581, 633 |
| Ama87I | CYCGRG | 2 cut(s) | 125, 215 |
| AoxI | GGCC | 4 cut(s) | 97, 1251, 1368, 1401 |
| ApaLI | GTGCAC | 1 cut(s) | 375 |
| ApeKI | GCWGC | 4 cut(s) | 722, 848, 914, 1277 |
| ApoI | RAATTY | 7 cut(s) | 309, 699, 741, 878, 955, 1386, 1550 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 638, 670 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 527, 977, 1554 |
| AspLEI | GCGC | 1 cut(s) | 695 |
| AspS9I | GGNCC | 4 cut(s) | 98, 133, 204, 1369 |
| AsuHPI | GGTGA | 2 cut(s) | 1064, 1090 |
| AsuII | TTCGAA | 1 cut(s) | 247 |
| AvaI | CYCGRG | 2 cut(s) | 125, 215 |
| AvaII | GGWCC | 2 cut(s) | 133, 204 |
| BaeGI | GKGCMC | 1 cut(s) | 379 |
| BauI | CACGAG | 1 cut(s) | 1481 |
| Bbv12I | GWGCWC | 1 cut(s) | 379 |
| BbvI | GCAGC | 4 cut(s) | 709, 835, 926, 1264 |
| BccI | CCATC | 3 cut(s) | 378, 811, 865 |
| BceAI | ACGGC | 1 cut(s) | 1383 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 353, 387 |
| BciVI | GTATCC | 2 cut(s) | 451, 1332 |
| BclI | TGATCA | 1 cut(s) | 330 |
| BcoDI | GTCTC | 5 cut(s) | 67, 552, 752, 1149, 1478 |
| BfaI | CTAG | 1 cut(s) | 1152 |
| BfmI | CTRYAG | 2 cut(s) | 336, 1024 |
| BfrI | CTTAAG | 2 cut(s) | 347, 712 |
| BfuI | GTATCC | 2 cut(s) | 451, 1332 |
| BglII | AGATCT | 2 cut(s) | 1191, 1415 |
| BisI | GCNGC | 4 cut(s) | 723, 849, 915, 1278 |
| BlpI | GCTNAGC | 1 cut(s) | 852 |
| BlsI | GCNGC | 4 cut(s) | 724, 850, 916, 1279 |
| Bme18I | GGWCC | 2 cut(s) | 133, 204 |
| BmeT110I | CYCGRG | 2 cut(s) | 125, 215 |
| BmgT120I | GGNCC | 4 cut(s) | 98, 133, 204, 1369 |
| BmiI | GGNNCC | 2 cut(s) | 123, 664 |
| BmsI | GCATC | 2 cut(s) | 562, 1118 |
| BpmI | CTGGAG | 1 cut(s) | 559 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 852 |
| Bpu14I | TTCGAA | 1 cut(s) | 247 |
| BpuEI | CTTGAG | 4 cut(s) | 256, 1062, 1149, 1180 |
| BsaAI | YACGTR | 1 cut(s) | 707 |
| BsaJI | CCNNGG | 1 cut(s) | 1372 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 74, 104 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 20, 118, 142, 1340 |
| Bse1I | ACTGG | 2 cut(s) | 444, 1068 |
| BseDI | CCNNGG | 1 cut(s) | 1372 |
| BseGI | GGATG | 5 cut(s) | 287, 531, 782, 931, 1133 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 20, 118, 142, 1340 |
| BseMII | CTCAG | 8 cut(s) | 31, 116, 722, 843, 904, 965, 1179, 1284 |
| BseNI | ACTGG | 2 cut(s) | 444, 1068 |
| BseSI | GKGCMC | 1 cut(s) | 379 |
| BseXI | GCAGC | 4 cut(s) | 709, 835, 926, 1264 |
| BsgI | GTGCAG | 1 cut(s) | 1463 |
| Bsh1285I | CGRYCG | 1 cut(s) | 656 |
| BshFI | GGCC | 4 cut(s) | 99, 1253, 1370, 1403 |
| BsiEI | CGRYCG | 1 cut(s) | 656 |
| BsiHKAI | GWGCWC | 1 cut(s) | 379 |
| BsiHKCI | CYCGRG | 2 cut(s) | 125, 215 |
| BslFI | GGGAC | 2 cut(s) | 91, 305 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 20, 118, 142, 1340 |
| BsmAI | GTCTC | 5 cut(s) | 67, 552, 752, 1149, 1478 |
| BsmFI | GGGAC | 2 cut(s) | 91, 305 |
| BsnI | GGCC | 4 cut(s) | 99, 1253, 1370, 1403 |
| BsoBI | CYCGRG | 2 cut(s) | 125, 215 |
| Bsp119I | TTCGAA | 1 cut(s) | 247 |
| Bsp1286I | GDGCHC | 1 cut(s) | 379 |
| Bsp143I | GATC | 8 cut(s) | 297, 330, 354, 586, 638, 1009, 1191, 1415 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 852 |
| BspACI | CCGC | 5 cut(s) | 109, 279, 535, 629, 666 |
| BspANI | GGCC | 4 cut(s) | 99, 1253, 1370, 1403 |
| BspCNI | CTCAG | 8 cut(s) | 30, 115, 723, 844, 903, 964, 1180, 1285 |
| BspLI | GGNNCC | 2 cut(s) | 123, 664 |
| BspMAI | CTGCAG | 1 cut(s) | 1028 |
| BspPI | GGATC | 3 cut(s) | 292, 581, 633 |
| BspQI | GCTCTTC | 1 cut(s) | 1218 |
| BspT104I | TTCGAA | 1 cut(s) | 247 |
| BspTI | CTTAAG | 2 cut(s) | 347, 712 |
| BsrI | ACTGG | 2 cut(s) | 444, 1068 |
| BssECI | CCNNGG | 1 cut(s) | 1372 |
| BssMI | GATC | 8 cut(s) | 297, 330, 354, 586, 638, 1009, 1191, 1415 |
| BssSI | CACGAG | 1 cut(s) | 1481 |
| BssT1I | CCWWGG | 1 cut(s) | 1372 |
| Bst2BI | CACGAG | 1 cut(s) | 1481 |
| Bst4CI | ACNGT | 5 cut(s) | 204, 457, 575, 654, 1006 |
| Bst6I | CTCTTC | 2 cut(s) | 135, 1218 |
| BstAFI | CTTAAG | 2 cut(s) | 347, 712 |
| BstBAI | YACGTR | 1 cut(s) | 707 |
| BstBI | TTCGAA | 1 cut(s) | 247 |
| BstC8I | GCNNGC | 1 cut(s) | 551 |
| BstF5I | GGATG | 5 cut(s) | 287, 531, 782, 931, 1133 |
| BstHHI | GCGC | 1 cut(s) | 695 |
| BstKTI | GATC | 8 cut(s) | 300, 333, 357, 589, 641, 1012, 1194, 1418 |
| BstMAI | GTCTC | 5 cut(s) | 67, 552, 752, 1149, 1478 |
| BstMBI | GATC | 8 cut(s) | 297, 330, 354, 586, 638, 1009, 1191, 1415 |
| BstMCI | CGRYCG | 1 cut(s) | 656 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 1046, 1286 |
| BstNSI | RCATGY | 3 cut(s) | 160, 553, 1212 |
| BstSFI | CTRYAG | 2 cut(s) | 336, 1024 |
| BstSLI | GKGCMC | 1 cut(s) | 379 |
| BstV1I | GCAGC | 4 cut(s) | 709, 835, 926, 1264 |
| BstX2I | RGATCY | 3 cut(s) | 638, 1191, 1415 |
| BstYI | RGATCY | 3 cut(s) | 638, 1191, 1415 |
| BsuI | GTATCC | 2 cut(s) | 451, 1332 |
| BsuRI | GGCC | 4 cut(s) | 99, 1253, 1370, 1403 |
| BtsCI | GGATG | 5 cut(s) | 287, 531, 782, 931, 1133 |
| BtsIMutI | CAGTG | 1 cut(s) | 1061 |
| Cac8I | GCNNGC | 1 cut(s) | 551 |
| CfoI | GCGC | 1 cut(s) | 695 |
| Cfr13I | GGNCC | 4 cut(s) | 98, 133, 204, 1369 |
| CseI | GACGC | 1 cut(s) | 1091 |
| Csp6I | GTAC | 2 cut(s) | 1355, 1460 |
| CviQI | GTAC | 2 cut(s) | 1355, 1460 |
| DpnI | GATC | 8 cut(s) | 299, 332, 356, 588, 640, 1011, 1193, 1417 |
| DpnII | GATC | 8 cut(s) | 297, 330, 354, 586, 638, 1009, 1191, 1415 |
| DraI | TTTAAA | 1 cut(s) | 682 |
| EaeI | YGGCCR | 1 cut(s) | 1401 |
| Eam1104I | CTCTTC | 2 cut(s) | 135, 1218 |
| EarI | CTCTTC | 2 cut(s) | 135, 1218 |
| EciI | GGCGGA | 3 cut(s) | 294, 644, 655 |
| Eco130I | CCWWGG | 1 cut(s) | 1372 |
| Eco47I | GGWCC | 2 cut(s) | 133, 204 |
| Eco88I | CYCGRG | 2 cut(s) | 125, 215 |
| EcoO109I | RGGNCCY | 1 cut(s) | 98 |
| EcoRI | GAATTC | 3 cut(s) | 309, 878, 955 |
| EcoT14I | CCWWGG | 1 cut(s) | 1372 |
| EcoT22I | ATGCAT | 1 cut(s) | 555 |
| ErhI | CCWWGG | 1 cut(s) | 1372 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1071, 1103 |
| FaqI | GGGAC | 2 cut(s) | 91, 305 |
| FauI | CCCGC | 1 cut(s) | 116 |
| FbaI | TGATCA | 1 cut(s) | 330 |
| Fnu4HI | GCNGC | 4 cut(s) | 723, 849, 915, 1278 |
| FokI | GGATG | 5 cut(s) | 294, 518, 769, 938, 1140 |
| Fsp4HI | GCNGC | 4 cut(s) | 723, 849, 915, 1278 |
| FspBI | CTAG | 1 cut(s) | 1152 |
| FspI | TGCGCA | 1 cut(s) | 694 |
| GlaI | GCGC | 1 cut(s) | 694 |
| GluI | GCNGC | 4 cut(s) | 723, 849, 915, 1278 |
| GsuI | CTGGAG | 1 cut(s) | 559 |
| HaeIII | GGCC | 4 cut(s) | 99, 1253, 1370, 1403 |
| HgaI | GACGC | 1 cut(s) | 1091 |
| HhaI | GCGC | 1 cut(s) | 695 |
| Hin6I | GCGC | 1 cut(s) | 693 |
| HinP1I | GCGC | 1 cut(s) | 693 |
| HincII | GTYRAC | 1 cut(s) | 1177 |
| HindII | GTYRAC | 1 cut(s) | 1177 |
| HinfI | GANTC | 9 cut(s) | 75, 128, 179, 211, 218, 907, 1268, 1297, 1328 |
| HphI | GGTGA | 2 cut(s) | 1064, 1090 |
| Hpy166II | GTNNAC | 3 cut(s) | 377, 1098, 1177 |
| Hpy8I | GTNNAC | 3 cut(s) | 377, 1098, 1177 |
| Hpy99I | CGWCG | 2 cut(s) | 389, 1409 |
| HpyAV | CCTTC | 5 cut(s) | 65, 89, 243, 248, 1026 |
| HpyCH4III | ACNGT | 5 cut(s) | 204, 457, 575, 654, 1006 |
| HpyCH4IV | ACGT | 2 cut(s) | 231, 706 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 1046, 1286 |
| HpySE526I | ACGT | 2 cut(s) | 231, 706 |
| HspAI | GCGC | 1 cut(s) | 693 |
| Ksp22I | TGATCA | 1 cut(s) | 330 |
| Kzo9I | GATC | 8 cut(s) | 297, 330, 354, 586, 638, 1009, 1191, 1415 |
| LguI | GCTCTTC | 1 cut(s) | 1218 |
| LmnI | GCTCC | 2 cut(s) | 668, 845 |
| Lsp1109I | GCAGC | 4 cut(s) | 709, 835, 926, 1264 |
| LweI | GCATC | 2 cut(s) | 562, 1118 |
| MaeI | CTAG | 1 cut(s) | 1152 |
| MaeII | ACGT | 2 cut(s) | 231, 706 |
| MaeIII | GTNAC | 3 cut(s) | 487, 1000, 1070 |
| MalI | GATC | 8 cut(s) | 299, 332, 356, 588, 640, 1011, 1193, 1417 |
| MboI | GATC | 8 cut(s) | 297, 330, 354, 586, 638, 1009, 1191, 1415 |
| MboII | GAAGA | 3 cut(s) | 152, 771, 1235 |
| MflI | RGATCY | 3 cut(s) | 638, 1191, 1415 |
| MhlI | GDGCHC | 1 cut(s) | 379 |
| MlyI | GAGTC | 4 cut(s) | 69, 137, 227, 1306 |
| MmeI | TCCRAC | 1 cut(s) | 367 |
| Mph1103I | ATGCAT | 1 cut(s) | 555 |
| MroXI | GAANNNNTTC | 3 cut(s) | 527, 977, 1554 |
| MseI | TTAA | 7 cut(s) | 60, 348, 420, 570, 681, 713, 984 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1207 |
| MspA1I | CMGCKG | 1 cut(s) | 537 |
| MspCI | CTTAAG | 2 cut(s) | 347, 712 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 1046, 1286 |
| NdeII | GATC | 8 cut(s) | 297, 330, 354, 586, 638, 1009, 1191, 1415 |
| NlaIV | GGNNCC | 2 cut(s) | 123, 664 |
| NmuCI | GTSAC | 2 cut(s) | 1000, 1070 |
| NsbI | TGCGCA | 1 cut(s) | 694 |
| NsiI | ATGCAT | 1 cut(s) | 555 |
| NspI | RCATGY | 3 cut(s) | 160, 553, 1212 |
| NspV | TTCGAA | 1 cut(s) | 247 |
| PaeI | GCATGC | 1 cut(s) | 553 |
| PciI | ACATGT | 1 cut(s) | 156 |
| PciSI | GCTCTTC | 1 cut(s) | 1218 |
| PdmI | GAANNNNTTC | 3 cut(s) | 527, 977, 1554 |
| PfeI | GAWTC | 5 cut(s) | 179, 211, 907, 1268, 1328 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1340 |
| PkrI | GCNGC | 4 cut(s) | 724, 850, 916, 1279 |
| PleI | GAGTC | 4 cut(s) | 69, 136, 226, 1305 |
| PpsI | GAGTC | 4 cut(s) | 69, 136, 226, 1305 |
| Ppu21I | YACGTR | 1 cut(s) | 707 |
| PscI | ACATGT | 1 cut(s) | 156 |
| PspN4I | GGNNCC | 2 cut(s) | 123, 664 |
| PspPI | GGNCC | 4 cut(s) | 98, 133, 204, 1369 |
| PstI | CTGCAG | 1 cut(s) | 1028 |
| PsuI | RGATCY | 3 cut(s) | 638, 1191, 1415 |
| RsaI | GTAC | 2 cut(s) | 1356, 1461 |
| RsaNI | GTAC | 2 cut(s) | 1355, 1460 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1207 |
| SapI | GCTCTTC | 1 cut(s) | 1218 |
| SaqAI | TTAA | 7 cut(s) | 60, 348, 420, 570, 681, 713, 984 |
| SatI | GCNGC | 4 cut(s) | 723, 849, 915, 1278 |
| Sau3AI | GATC | 8 cut(s) | 297, 330, 354, 586, 638, 1009, 1191, 1415 |
| Sau96I | GGNCC | 4 cut(s) | 98, 133, 204, 1369 |
| SchI | GAGTC | 4 cut(s) | 69, 137, 227, 1306 |
| SduI | GDGCHC | 1 cut(s) | 379 |
| SfaNI | GCATC | 2 cut(s) | 562, 1118 |
| SfcI | CTRYAG | 2 cut(s) | 336, 1024 |
| SfuI | TTCGAA | 1 cut(s) | 247 |
| SinI | GGWCC | 2 cut(s) | 133, 204 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1207 |
| SmlI | CTYRAG | 6 cut(s) | 235, 347, 712, 1077, 1164, 1195 |
| SmoI | CTYRAG | 6 cut(s) | 235, 347, 712, 1077, 1164, 1195 |
| SphI | GCATGC | 1 cut(s) | 553 |
| SsiI | CCGC | 5 cut(s) | 109, 279, 535, 629, 666 |
| SspMI | CTAG | 1 cut(s) | 1152 |
| StyI | CCWWGG | 1 cut(s) | 1372 |
| TaaI | ACNGT | 5 cut(s) | 204, 457, 575, 654, 1006 |
| TaiI | ACGT | 2 cut(s) | 234, 709 |
| TaqI | TCGA | 7 cut(s) | 161, 182, 247, 556, 791, 1012, 1305 |
| TaqII | GACCGA | 1 cut(s) | 121 |
| TatI | WGTACW | 1 cut(s) | 1459 |
| TfiI | GAWTC | 5 cut(s) | 179, 211, 907, 1268, 1328 |
| Tru1I | TTAA | 7 cut(s) | 60, 348, 420, 570, 681, 713, 984 |
| Tru9I | TTAA | 7 cut(s) | 60, 348, 420, 570, 681, 713, 984 |
| TscAI | CASTG | 1 cut(s) | 1068 |
| TseFI | GTSAC | 2 cut(s) | 1000, 1070 |
| TseI | GCWGC | 4 cut(s) | 722, 848, 914, 1277 |
| Tsp45I | GTSAC | 2 cut(s) | 1000, 1070 |
| TspDTI | ATGAA | 9 cut(s) | 153, 520, 771, 839, 899, 942, 986, 1191, 1458 |
| TspRI | CASTG | 1 cut(s) | 1068 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1340 |
| Vha464I | CTTAAG | 2 cut(s) | 347, 712 |
| VneI | GTGCAC | 1 cut(s) | 375 |
| VpaK11BI | GGWCC | 2 cut(s) | 133, 204 |
| XapI | RAATTY | 7 cut(s) | 309, 699, 741, 878, 955, 1386, 1550 |
| XceI | RCATGY | 3 cut(s) | 160, 553, 1212 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 793 |
| XmnI | GAANNNNTTC | 3 cut(s) | 527, 977, 1554 |
| XspI | CTAG | 1 cut(s) | 1152 |
| Zsp2I | ATGCAT | 1 cut(s) | 555 |