Rh2BG116200

Belongs to the tRNA nucleotidyltransferase poly(A) polymerase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Forward (+)
9837613 .. 9842372
4760 bp
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UTR
Exon/CDS
Intron
Rh2BG116200.1

Sequence Viewer

Length: 1572 bp
ATGGCGATAACACCCCTCAGAGGCAACAATCACTTGTTATCTCGCCTCAAACTCCTTCTTAACCAGCAACAGAGACTCGCCCACACGCTCTCCGAAGGCCCTCAGTCCCGCCCTAAAATGGTTCCCGAGTCGGTCCATGAAGAGGGGTTGATTGACATGTCGAAATGGAGAAAGGTGGATTCGAGGTTGTTTGGGATAACACGGTCCATGATTCCCGAGTCATCTTGGAACGTCTTGAGAATACTTCGAAGGGAAGGGTTTGAAGCCTACTTAGTGGGCGGATGTGTGAGGGACTTGATCCTGAAAAGAATTCCCAAAGACTTTGATGTGATCACTACAGCTAATCTTAAGCAGATCAAGAGGCAGTTCCATCGTGCACAAATCGTCGGACAACGATTTCCTATATGTATGGTGCATATTAAAGGTTCTGTCATAGAGGTATCCAGTTTTGAAACGGTGGCAAAAGCAAAACACTCTGATAAAGAAGTTACTTTCTCTCAAATGCCAAAGGGCTGTGATAAGAAAGATTTCATCCGCTGGAGAAACAGCATGCATCGAGACTTCACAATTAACAGTTTGTTCTTTGATCCTTTATCAAATAAAATCTTTGATTATGCAAATGGAATGGCGGATTTGAGATCCTCAAAGCTACGGTCGTTAGGCTCCGCCAAGTTGTCATTTAAAGAGGATTGCGCAAGAATTTTACGTGGCTTAAGAATTGCTGCTCGTCTGAGTTTGAAAATTTCAAAAGAAACCGAGACAGCTATACATAAGTTTTCTTCATCCATTTCGACATTGGCAACGAGTAGAATTATGATGGAAATGAACTATATGCTTTCTTATGGAGCTGCTGAGCCATCTCTCTGTCTGCTTTGGGAATTCAATCTACTCAGAGTTCTACTTCCGATTCATGCAGCATACTTGGATGAACAGAGGATTAGGAAGTTTCCTCAGAATTCCACAATGTTGATGAAACTATTCTTTAATTTGGATAAAGTTGTCACGGTTGATCGACCTTCTGACTGCAGTTTATGGGTAGCTCTGTTGGCTTTTCACATGGCACTGGTCAGTCACCCTCAAGACGCTCTTGTGGTGTTCACCTTTGCTTCTGTCCTGTATCATGGGGGATGCAAAAAGGGTCTTACATTTGCTAGAGACAATGCTCAAGTGATAGTTGACTATCTACCTGAGATCTCAAGTTCATCTGCATGTAAATCAGAGGAAGAGCTTGAAAAAGAAGTTTCCTTATTGGCCTCTCTTGTTTTAGATTCTATTGCTGCTCTAACTGCAACTGAGAGTCTTGTCGAAACGATGTCTAAGTATCCTGAATCTCCATGCTCTGGATTGGTATTTGTACCAAAGAAAACGGCCCAAGGTGTTGCTGAAATTTTTAGAGGTCTGGCCGACGACATCAGATCTTACAATAGAGAAAGAAAAAGTTATGAAATTGATTACCCTGTACTTCGGAAAGGTTTTCTGCACGAGACAAGATTTGTGCTTGGCGAAATTATTTTAGAAACCATGAGCAGTAGTATTTTGAAAGGGGAGGAATTTGTTCAGGAGGACTGCTGA

Protein Analysis

523

Amino Acids

59.34

Weight (kDa)

9.05

Isoelectric Point (pI)

53.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PolyA_pol PF01743 89 - 218 4.3e-25 Poly A polymerase head domain
PolyA_pol_RNAbd PF12627 246 - 307 3e-15 Probable RNA and SrmB- binding site of polymerase A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 694
AccB7I CCANNNNNTGG 1 cut(s) 1340
AciI CCGC 5 cut(s) 109, 279, 535, 629, 666
AclWI GGATC 3 cut(s) 292, 581, 633
AcoI YGGCCR 1 cut(s) 1401
AcsI RAATTY 7 cut(s) 309, 699, 741, 878, 955, 1386, 1550
AfaI GTAC 2 cut(s) 1356, 1461
AfiI CCNNNNNNNGG 4 cut(s) 20, 118, 142, 1340
AflII CTTAAG 2 cut(s) 347, 712
AflIII ACRYGT 1 cut(s) 156
AgsI TTSAA 7 cut(s) 263, 452, 739, 747, 883, 1232, 1540
AluBI AGCT 6 cut(s) 341, 649, 764, 848, 1040, 1228
AluI AGCT 6 cut(s) 341, 649, 764, 848, 1040, 1228
Alw21I GWGCWC 1 cut(s) 379
Alw26I GTCTC 5 cut(s) 67, 552, 752, 1149, 1478
Alw44I GTGCAC 1 cut(s) 375
AlwI GGATC 3 cut(s) 292, 581, 633
Ama87I CYCGRG 2 cut(s) 125, 215
AoxI GGCC 4 cut(s) 97, 1251, 1368, 1401
ApaLI GTGCAC 1 cut(s) 375
ApeKI GCWGC 4 cut(s) 722, 848, 914, 1277
ApoI RAATTY 7 cut(s) 309, 699, 741, 878, 955, 1386, 1550
ArsI GACNNNNNNTTYG 2 cut(s) 638, 670
Asp700I GAANNNNTTC 3 cut(s) 527, 977, 1554
AspLEI GCGC 1 cut(s) 695
AspS9I GGNCC 4 cut(s) 98, 133, 204, 1369
AsuHPI GGTGA 2 cut(s) 1064, 1090
AsuII TTCGAA 1 cut(s) 247
AvaI CYCGRG 2 cut(s) 125, 215
AvaII GGWCC 2 cut(s) 133, 204
BaeGI GKGCMC 1 cut(s) 379
BauI CACGAG 1 cut(s) 1481
Bbv12I GWGCWC 1 cut(s) 379
BbvI GCAGC 4 cut(s) 709, 835, 926, 1264
BccI CCATC 3 cut(s) 378, 811, 865
BceAI ACGGC 1 cut(s) 1383
BcgI CGANNNNNNTGC 2 cut(s) 353, 387
BciVI GTATCC 2 cut(s) 451, 1332
BclI TGATCA 1 cut(s) 330
BcoDI GTCTC 5 cut(s) 67, 552, 752, 1149, 1478
BfaI CTAG 1 cut(s) 1152
BfmI CTRYAG 2 cut(s) 336, 1024
BfrI CTTAAG 2 cut(s) 347, 712
BfuI GTATCC 2 cut(s) 451, 1332
BglII AGATCT 2 cut(s) 1191, 1415
BisI GCNGC 4 cut(s) 723, 849, 915, 1278
BlpI GCTNAGC 1 cut(s) 852
BlsI GCNGC 4 cut(s) 724, 850, 916, 1279
Bme18I GGWCC 2 cut(s) 133, 204
BmeT110I CYCGRG 2 cut(s) 125, 215
BmgT120I GGNCC 4 cut(s) 98, 133, 204, 1369
BmiI GGNNCC 2 cut(s) 123, 664
BmsI GCATC 2 cut(s) 562, 1118
BpmI CTGGAG 1 cut(s) 559
Bpu1102I GCTNAGC 1 cut(s) 852
Bpu14I TTCGAA 1 cut(s) 247
BpuEI CTTGAG 4 cut(s) 256, 1062, 1149, 1180
BsaAI YACGTR 1 cut(s) 707
BsaJI CCNNGG 1 cut(s) 1372
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bsc4I CCNNNNNNNGG 4 cut(s) 20, 118, 142, 1340
Bse1I ACTGG 2 cut(s) 444, 1068
BseDI CCNNGG 1 cut(s) 1372
BseGI GGATG 5 cut(s) 287, 531, 782, 931, 1133
BseLI CCNNNNNNNGG 4 cut(s) 20, 118, 142, 1340
BseMII CTCAG 8 cut(s) 31, 116, 722, 843, 904, 965, 1179, 1284
BseNI ACTGG 2 cut(s) 444, 1068
BseSI GKGCMC 1 cut(s) 379
BseXI GCAGC 4 cut(s) 709, 835, 926, 1264
BsgI GTGCAG 1 cut(s) 1463
Bsh1285I CGRYCG 1 cut(s) 656
BshFI GGCC 4 cut(s) 99, 1253, 1370, 1403
BsiEI CGRYCG 1 cut(s) 656
BsiHKAI GWGCWC 1 cut(s) 379
BsiHKCI CYCGRG 2 cut(s) 125, 215
BslFI GGGAC 2 cut(s) 91, 305
BslI CCNNNNNNNGG 4 cut(s) 20, 118, 142, 1340
BsmAI GTCTC 5 cut(s) 67, 552, 752, 1149, 1478
BsmFI GGGAC 2 cut(s) 91, 305
BsnI GGCC 4 cut(s) 99, 1253, 1370, 1403
BsoBI CYCGRG 2 cut(s) 125, 215
Bsp119I TTCGAA 1 cut(s) 247
Bsp1286I GDGCHC 1 cut(s) 379
Bsp143I GATC 8 cut(s) 297, 330, 354, 586, 638, 1009, 1191, 1415
Bsp1720I GCTNAGC 1 cut(s) 852
BspACI CCGC 5 cut(s) 109, 279, 535, 629, 666
BspANI GGCC 4 cut(s) 99, 1253, 1370, 1403
BspCNI CTCAG 8 cut(s) 30, 115, 723, 844, 903, 964, 1180, 1285
BspLI GGNNCC 2 cut(s) 123, 664
BspMAI CTGCAG 1 cut(s) 1028
BspPI GGATC 3 cut(s) 292, 581, 633
BspQI GCTCTTC 1 cut(s) 1218
BspT104I TTCGAA 1 cut(s) 247
BspTI CTTAAG 2 cut(s) 347, 712
BsrI ACTGG 2 cut(s) 444, 1068
BssECI CCNNGG 1 cut(s) 1372
BssMI GATC 8 cut(s) 297, 330, 354, 586, 638, 1009, 1191, 1415
BssSI CACGAG 1 cut(s) 1481
BssT1I CCWWGG 1 cut(s) 1372
Bst2BI CACGAG 1 cut(s) 1481
Bst4CI ACNGT 5 cut(s) 204, 457, 575, 654, 1006
Bst6I CTCTTC 2 cut(s) 135, 1218
BstAFI CTTAAG 2 cut(s) 347, 712
BstBAI YACGTR 1 cut(s) 707
BstBI TTCGAA 1 cut(s) 247
BstC8I GCNNGC 1 cut(s) 551
BstF5I GGATG 5 cut(s) 287, 531, 782, 931, 1133
BstHHI GCGC 1 cut(s) 695
BstKTI GATC 8 cut(s) 300, 333, 357, 589, 641, 1012, 1194, 1418
BstMAI GTCTC 5 cut(s) 67, 552, 752, 1149, 1478
BstMBI GATC 8 cut(s) 297, 330, 354, 586, 638, 1009, 1191, 1415
BstMCI CGRYCG 1 cut(s) 656
BstMWI GCNNNNNNNGC 2 cut(s) 1046, 1286
BstNSI RCATGY 3 cut(s) 160, 553, 1212
BstSFI CTRYAG 2 cut(s) 336, 1024
BstSLI GKGCMC 1 cut(s) 379
BstV1I GCAGC 4 cut(s) 709, 835, 926, 1264
BstX2I RGATCY 3 cut(s) 638, 1191, 1415
BstYI RGATCY 3 cut(s) 638, 1191, 1415
BsuI GTATCC 2 cut(s) 451, 1332
BsuRI GGCC 4 cut(s) 99, 1253, 1370, 1403
BtsCI GGATG 5 cut(s) 287, 531, 782, 931, 1133
BtsIMutI CAGTG 1 cut(s) 1061
Cac8I GCNNGC 1 cut(s) 551
CfoI GCGC 1 cut(s) 695
Cfr13I GGNCC 4 cut(s) 98, 133, 204, 1369
CseI GACGC 1 cut(s) 1091
Csp6I GTAC 2 cut(s) 1355, 1460
CviQI GTAC 2 cut(s) 1355, 1460
DpnI GATC 8 cut(s) 299, 332, 356, 588, 640, 1011, 1193, 1417
DpnII GATC 8 cut(s) 297, 330, 354, 586, 638, 1009, 1191, 1415
DraI TTTAAA 1 cut(s) 682
EaeI YGGCCR 1 cut(s) 1401
Eam1104I CTCTTC 2 cut(s) 135, 1218
EarI CTCTTC 2 cut(s) 135, 1218
EciI GGCGGA 3 cut(s) 294, 644, 655
Eco130I CCWWGG 1 cut(s) 1372
Eco47I GGWCC 2 cut(s) 133, 204
Eco88I CYCGRG 2 cut(s) 125, 215
EcoO109I RGGNCCY 1 cut(s) 98
EcoRI GAATTC 3 cut(s) 309, 878, 955
EcoT14I CCWWGG 1 cut(s) 1372
EcoT22I ATGCAT 1 cut(s) 555
ErhI CCWWGG 1 cut(s) 1372
FalI AAGNNNNNCTT 2 cut(s) 1071, 1103
FaqI GGGAC 2 cut(s) 91, 305
FauI CCCGC 1 cut(s) 116
FbaI TGATCA 1 cut(s) 330
Fnu4HI GCNGC 4 cut(s) 723, 849, 915, 1278
FokI GGATG 5 cut(s) 294, 518, 769, 938, 1140
Fsp4HI GCNGC 4 cut(s) 723, 849, 915, 1278
FspBI CTAG 1 cut(s) 1152
FspI TGCGCA 1 cut(s) 694
GlaI GCGC 1 cut(s) 694
GluI GCNGC 4 cut(s) 723, 849, 915, 1278
GsuI CTGGAG 1 cut(s) 559
HaeIII GGCC 4 cut(s) 99, 1253, 1370, 1403
HgaI GACGC 1 cut(s) 1091
HhaI GCGC 1 cut(s) 695
Hin6I GCGC 1 cut(s) 693
HinP1I GCGC 1 cut(s) 693
HincII GTYRAC 1 cut(s) 1177
HindII GTYRAC 1 cut(s) 1177
HinfI GANTC 9 cut(s) 75, 128, 179, 211, 218, 907, 1268, 1297, 1328
HphI GGTGA 2 cut(s) 1064, 1090
Hpy166II GTNNAC 3 cut(s) 377, 1098, 1177
Hpy8I GTNNAC 3 cut(s) 377, 1098, 1177
Hpy99I CGWCG 2 cut(s) 389, 1409
HpyAV CCTTC 5 cut(s) 65, 89, 243, 248, 1026
HpyCH4III ACNGT 5 cut(s) 204, 457, 575, 654, 1006
HpyCH4IV ACGT 2 cut(s) 231, 706
HpyF10VI GCNNNNNNNGC 2 cut(s) 1046, 1286
HpySE526I ACGT 2 cut(s) 231, 706
HspAI GCGC 1 cut(s) 693
Ksp22I TGATCA 1 cut(s) 330
Kzo9I GATC 8 cut(s) 297, 330, 354, 586, 638, 1009, 1191, 1415
LguI GCTCTTC 1 cut(s) 1218
LmnI GCTCC 2 cut(s) 668, 845
Lsp1109I GCAGC 4 cut(s) 709, 835, 926, 1264
LweI GCATC 2 cut(s) 562, 1118
MaeI CTAG 1 cut(s) 1152
MaeII ACGT 2 cut(s) 231, 706
MaeIII GTNAC 3 cut(s) 487, 1000, 1070
MalI GATC 8 cut(s) 299, 332, 356, 588, 640, 1011, 1193, 1417
MboI GATC 8 cut(s) 297, 330, 354, 586, 638, 1009, 1191, 1415
MboII GAAGA 3 cut(s) 152, 771, 1235
MflI RGATCY 3 cut(s) 638, 1191, 1415
MhlI GDGCHC 1 cut(s) 379
MlyI GAGTC 4 cut(s) 69, 137, 227, 1306
MmeI TCCRAC 1 cut(s) 367
Mph1103I ATGCAT 1 cut(s) 555
MroXI GAANNNNTTC 3 cut(s) 527, 977, 1554
MseI TTAA 7 cut(s) 60, 348, 420, 570, 681, 713, 984
MslI CAYNNNNRTG 1 cut(s) 1207
MspA1I CMGCKG 1 cut(s) 537
MspCI CTTAAG 2 cut(s) 347, 712
MwoI GCNNNNNNNGC 2 cut(s) 1046, 1286
NdeII GATC 8 cut(s) 297, 330, 354, 586, 638, 1009, 1191, 1415
NlaIV GGNNCC 2 cut(s) 123, 664
NmuCI GTSAC 2 cut(s) 1000, 1070
NsbI TGCGCA 1 cut(s) 694
NsiI ATGCAT 1 cut(s) 555
NspI RCATGY 3 cut(s) 160, 553, 1212
NspV TTCGAA 1 cut(s) 247
PaeI GCATGC 1 cut(s) 553
PciI ACATGT 1 cut(s) 156
PciSI GCTCTTC 1 cut(s) 1218
PdmI GAANNNNTTC 3 cut(s) 527, 977, 1554
PfeI GAWTC 5 cut(s) 179, 211, 907, 1268, 1328
PflMI CCANNNNNTGG 1 cut(s) 1340
PkrI GCNGC 4 cut(s) 724, 850, 916, 1279
PleI GAGTC 4 cut(s) 69, 136, 226, 1305
PpsI GAGTC 4 cut(s) 69, 136, 226, 1305
Ppu21I YACGTR 1 cut(s) 707
PscI ACATGT 1 cut(s) 156
PspN4I GGNNCC 2 cut(s) 123, 664
PspPI GGNCC 4 cut(s) 98, 133, 204, 1369
PstI CTGCAG 1 cut(s) 1028
PsuI RGATCY 3 cut(s) 638, 1191, 1415
RsaI GTAC 2 cut(s) 1356, 1461
RsaNI GTAC 2 cut(s) 1355, 1460
RseI CAYNNNNRTG 1 cut(s) 1207
SapI GCTCTTC 1 cut(s) 1218
SaqAI TTAA 7 cut(s) 60, 348, 420, 570, 681, 713, 984
SatI GCNGC 4 cut(s) 723, 849, 915, 1278
Sau3AI GATC 8 cut(s) 297, 330, 354, 586, 638, 1009, 1191, 1415
Sau96I GGNCC 4 cut(s) 98, 133, 204, 1369
SchI GAGTC 4 cut(s) 69, 137, 227, 1306
SduI GDGCHC 1 cut(s) 379
SfaNI GCATC 2 cut(s) 562, 1118
SfcI CTRYAG 2 cut(s) 336, 1024
SfuI TTCGAA 1 cut(s) 247
SinI GGWCC 2 cut(s) 133, 204
SmiMI CAYNNNNRTG 1 cut(s) 1207
SmlI CTYRAG 6 cut(s) 235, 347, 712, 1077, 1164, 1195
SmoI CTYRAG 6 cut(s) 235, 347, 712, 1077, 1164, 1195
SphI GCATGC 1 cut(s) 553
SsiI CCGC 5 cut(s) 109, 279, 535, 629, 666
SspMI CTAG 1 cut(s) 1152
StyI CCWWGG 1 cut(s) 1372
TaaI ACNGT 5 cut(s) 204, 457, 575, 654, 1006
TaiI ACGT 2 cut(s) 234, 709
TaqI TCGA 7 cut(s) 161, 182, 247, 556, 791, 1012, 1305
TaqII GACCGA 1 cut(s) 121
TatI WGTACW 1 cut(s) 1459
TfiI GAWTC 5 cut(s) 179, 211, 907, 1268, 1328
Tru1I TTAA 7 cut(s) 60, 348, 420, 570, 681, 713, 984
Tru9I TTAA 7 cut(s) 60, 348, 420, 570, 681, 713, 984
TscAI CASTG 1 cut(s) 1068
TseFI GTSAC 2 cut(s) 1000, 1070
TseI GCWGC 4 cut(s) 722, 848, 914, 1277
Tsp45I GTSAC 2 cut(s) 1000, 1070
TspDTI ATGAA 9 cut(s) 153, 520, 771, 839, 899, 942, 986, 1191, 1458
TspRI CASTG 1 cut(s) 1068
Van91I CCANNNNNTGG 1 cut(s) 1340
Vha464I CTTAAG 2 cut(s) 347, 712
VneI GTGCAC 1 cut(s) 375
VpaK11BI GGWCC 2 cut(s) 133, 204
XapI RAATTY 7 cut(s) 309, 699, 741, 878, 955, 1386, 1550
XceI RCATGY 3 cut(s) 160, 553, 1212
XcmI CCANNNNNNNNNTGG 1 cut(s) 793
XmnI GAANNNNTTC 3 cut(s) 527, 977, 1554
XspI CTAG 1 cut(s) 1152
Zsp2I ATGCAT 1 cut(s) 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.