Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0002344

Physical Location & Seq

Genomic Coordinates Forward (+)

19055088 .. 19068412

Gene Structure 13325 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1233000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2160 bp

ATGGCGATAATATCTCCGCGAGGCTCCAACAAGTTCTTGCTATCTCGCCTCGGAGCCCTAATCAAGCAACAGAGACTCATCAACGCATTCTCTGAGGGAGGGTTGCAAGCTCAGGTTCACCCTAAAATGGTTCCAGACTCGGTGCCGGACCAAGGTTTCATTGATATGTCCAAGTGGAAAAAGGTCAACGCGAGGGTCCTTGGGATAAAACGCTCCATGATTTCGCAGCCCTCTTGGATTGTCTTGAAACTTCTTCAGGCTGAAGGATTTGAGGCCTACTTAGTGGGTGGATGTGTCAGAGACTTAATCCTCAAAAGAGTACCTAAAGACTTCGATGTGATCACTACAGCTAATCTTAAAGAGATCAAGAAGAAATTTCATCGTGCAGATATTGTTGGGCAACGGTTTCCTATATGCAGGGTGCATGTTAAAGGCACTGTCATTGAGGTATCGAGTTTTGAAACAGTGGCAAGAGATGCAGGAGAAAATAAAGATAAAGATAATTTATCTTGTAGGCCACCTGGCTGTGATAAGAAAGATTTCGTCCGTTGGAAAAACAGCATGCATCGGGACTTCACTATTAACTGTTTATTCTTTGATCCTTTTGCGAATAAGATCTATGATTATGCTAATGGAATGGCGGATTTGAGGCACTTAAAGCTACGGACGCTAGGCCCTGCCAAGTTGTCATTTGAAGAGGATTGTGCAAGAATCTTGCGGGGCTTAAGAATTGCTGCTCGTCTGAGCTTGTCAATTTCAAAAGAAACTGAGACCGCAATGCATAAGCTTTCTTCATCCATTTTGAGTTTGAGTAAGTCCAGAATAATGATGGAGATGGACTATATGCTTTCTTATGGAGCTGCGGAGGCGTCACTCTGTTTGCTGTGGAGATTTGATCTAATCAGAGTTCTGTTTCCCTTTCATGCAGCATACTTTGATCAACAGAGTGAAAACTTGAAAGAAGCTCAGAGTTCCACGATGTTGATGAAACTATTCTCAAATATGGATAAAGTGGTTAGCTGTGATCGGCCTGGTCACTGCTCTTTATGGGTCGGATTGTTGGCTTTTCACCTGGCACTAGTCAACAACCCACAAGATGCTCTTGTTGTGTTGACTTTTGCTTCCGTACTGTATCATGAAGAATGGGAAGAAGGTGTTAAATTTTCCAGGGACAATGCTGCATCGATAGTTAACTATGTACCTGAGATCTCAGGCTCATGTGAATTTAAATCAGATGAAGAACTTGCAAAACAAGTTTCCCAGTTAGCTTCTTGTGTGCTAGATTATATTGCTGCTTTAACTGCAACAAAAGATCCTGATGAATCAATGTCCAGATATCCTGTTTTTCCATTCTCTGGGTTGGCATTTTTATCAAAGAATATGGCTAAACATGTTGCTGCAATTGTTGAAGTGCTGGCCAATGACATCGAATATTACAATCAAGGAAGGAAGAATTTTGAGATTGATTGCCACTCACTTGGGAAAGGTCATATGCGTGAGATTAGGTTTGTTTTAGGAAAAGTTATTCTAGAAACCATGGACAGTGGGATTTTGAGAGGGAAGGAAGTTGTTCAGGAGAATGAGGACAACTACCGCCTGCAGCGGGAGAGCATTGACAAAAATTTCACTAAGGATAGAAAACGTGGCCGTACAACTGATACCCCTGAACTAAAAGAAGATTTGTCCAAGAAACATAAGGTGAAAGAAGCTTTGGATCCAGATATTGCTATCGATAATCAAGAGGTTGTTGAAACAGCTGAATTACCCCAGAAGGAGTTGATTTCAGTTCTGGGAAATATATTAGAGAAGAAAAAACGTCAGTTACCGGAAGAGGTGATTGAGAAAAAGCGAGAGCTTTGTGGGAATGATAAGAATGAGAAGTTCCAGAATAAGCAGAAGAAGAATATTAAGAAGCGTATTTCAAGTCAGGAGGAGACTATTAATGTGGAAAATATGTTAGAGCAGAGAAGGTATCCTGTAACAAGGAAAGTGATCCGTGAGAAGATTACAGAACTCAGACAAGAAACAGATGAGGAGAGAAGCAGTCCACCTCCACTATTTAGTCATTCCAGCAGTGGGGTTGAGGAGATTCGGAAACACAAACAAGTAGCAGAAAAGCCAATATCCGGTCTCCGTCGACTATCTAGTCTCTTCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004652 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006276 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031124 GO:0034641 GO:0043170 GO:0043412 GO:0043631 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0070566 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

720

Amino Acids

81.98

Weight (kDa)

8.96

Isoelectric Point (pI)

52.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PolyA_pol	PF01743	92 - 221	1.1e-22	Poly A polymerase head domain
PolyA_pol_RNAbd	PF12627	250 - 310	2.2e-14	Probable RNA and SrmB- binding site of polymerase A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17580
fragaria_vesca	FvH4_1g10510 FvH4_1g10510 FvH4_1g10510 FvH4_1g10510 FvH4_1g29700
malus_domestica	MD02G1119000.v1.1 MD15G1233000.v1.1
prunus_persica	Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1
pyrus_communis	pycom02g09260 pycom02g09270 pycom15g20750
rosa_chinensis	RchiOBHm_Chr2g0097411 RchiOBHm_Chr2g0097511 RchiOBHm_Chr3g0465401
rosa_laevigata	RLG00000016724
rosa_multiflora	Rmu_sc0001060.1_g000002 Rmu_sc0004220.1_g000008 Rmu_sc0011781.1_g000006
rosa_roxburghii	Rroxscaffold_2G00144710
rosa_rugosa	Rorug02G0066800 Rorug02G0066800 Rorug02G0066800
rosa_samantha	Rh2AG113200 Rh2BG116200 Rh2BG116300 Rh2CG118200 Rh2CG118300 Rh2DG117300 Rh3BG141600 Rh3CG142700 Rh3DG142700
rosa_wichuraiana	Rw2G008870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2145
AccB1I	GGYRCC	1 cut(s)	142
AccB7I	CCANNNNNTGG	1 cut(s)	1355
AccI	GTMKAC	1 cut(s)	2137
AccII	CGCG	2 cut(s)	19, 191
AciI	CCGC	7 cut(s)	17, 641, 718, 774, 863, 1594, 1603
AclWI	GGATC	5 cut(s)	593, 1307, 1709, 1722, 1987
AcoI	YGGCCR	2 cut(s)	1416, 1645
AcsI	RAATTY	5 cut(s)	374, 1160, 1223, 1453, 1621
AcuI	CTGAAG	2 cut(s)	239, 282
AcyI	GRCGYC	1 cut(s)	869
AfaI	GTAC	4 cut(s)	321, 1128, 1200, 1651
AfiI	CCNNNNNNNGG	6 cut(s)	127, 152, 1355, 1603, 2076, 2126
AflII	CTTAAG	1 cut(s)	724
AflIII	ACRYGT	1 cut(s)	1390
AgsI	TTSAA	9 cut(s)	247, 461, 695, 759, 958, 1409, 1751, 1923, 2155
AhlI	ACTAGT	1 cut(s)	1078
AjnI	CCWGG	4 cut(s)	520, 1030, 1071, 1166
AjuI	GAANNNNNNNTTGG	2 cut(s)	1694, 1726
Alw26I	GTCTC	6 cut(s)	67, 294, 764, 1928, 2135, 2153
AlwI	GGATC	5 cut(s)	593, 1307, 1709, 1722, 1987
AoxI	GGCC	6 cut(s)	273, 515, 673, 1028, 1416, 1645
ApeKI	GCWGC	8 cut(s)	226, 734, 860, 926, 1178, 1292, 1397, 1600
ApoI	RAATTY	5 cut(s)	374, 1160, 1223, 1453, 1621
AseI	ATTAAT	1 cut(s)	1941
Asp700I	GAANNNNTTC	3 cut(s)	539, 992, 1569
AspS9I	GGNCC	3 cut(s)	148, 196, 674
AsuHPI	GGTGA	4 cut(s)	110, 1061, 1711, 1846
AvaII	GGWCC	2 cut(s)	148, 196
BalI	TGGCCA	1 cut(s)	1418
BamHI	GGATCC	1 cut(s)	1714
BanI	GGYRCC	1 cut(s)	142
BanII	GRGCYC	1 cut(s)	58
BbvI	GCAGC	8 cut(s)	238, 721, 847, 938, 1165, 1279, 1384, 1612
BccI	CCATC	2 cut(s)	823, 829
BceAI	ACGGC	1 cut(s)	1632
BciT130I	CCWGG	4 cut(s)	522, 1032, 1073, 1168
BciVI	GTATCC	1 cut(s)	1983
BclI	TGATCA	2 cut(s)	339, 937
BcoDI	GTCTC	6 cut(s)	67, 294, 764, 1928, 2135, 2153
BcuI	ACTAGT	1 cut(s)	1078
BfaI	CTAG	5 cut(s)	671, 1079, 1280, 1529, 2145
BfmI	CTRYAG	2 cut(s)	345, 1598
BfrI	CTTAAG	1 cut(s)	724
BfuI	GTATCC	1 cut(s)	1983
BglII	AGATCT	2 cut(s)	615, 1206
BisI	GCNGC	8 cut(s)	227, 735, 861, 927, 1179, 1293, 1398, 1601
BlsI	GCNGC	8 cut(s)	228, 736, 862, 928, 1180, 1294, 1399, 1602
Bme1390I	CCNGG	4 cut(s)	522, 1032, 1073, 1168
Bme18I	GGWCC	2 cut(s)	148, 196
BmgT120I	GGNCC	3 cut(s)	148, 196, 674
BmiI	GGNNCC	6 cut(s)	25, 55, 132, 144, 197, 1716
BmrFI	CCNGG	4 cut(s)	522, 1032, 1073, 1168
BmrI	ACTGGG	1 cut(s)	1255
BmsI	GCATC	4 cut(s)	466, 574, 1087, 1190
BmuI	ACTGGG	1 cut(s)	1255
Bpu10I	CCTNAGC	1 cut(s)	111
Bsa29I	ATCGAT	2 cut(s)	1184, 1731
BsaHI	GRCGYC	1 cut(s)	869
BsaI	GGTCTC	2 cut(s)	764, 2135
BsaJI	CCNNGG	5 cut(s)	49, 151, 199, 1167, 1536
BsaWI	WCCGGW	2 cut(s)	1825, 2126
Bsc4I	CCNNNNNNNGG	6 cut(s)	127, 152, 1355, 1603, 2076, 2126
Bse1I	ACTGG	1 cut(s)	1261
Bse3DI	GCAATG	1 cut(s)	783
BseBI	CCWGG	4 cut(s)	522, 1032, 1073, 1168
BseCI	ATCGAT	2 cut(s)	1184, 1731
BseDI	CCNNGG	5 cut(s)	49, 151, 199, 1167, 1536
BseGI	GGATG	2 cut(s)	296, 794
BseLI	CCNNNNNNNGG	6 cut(s)	127, 152, 1355, 1603, 2076, 2126
BseMI	GCAATG	1 cut(s)	783
BseMII	CTCAG	8 cut(s)	84, 125, 734, 759, 980, 1194, 1224, 2029
BseNI	ACTGG	1 cut(s)	1261
BseRI	GAGGAG	3 cut(s)	1946, 2048, 2099
BseXI	GCAGC	8 cut(s)	238, 721, 847, 938, 1165, 1279, 1384, 1612
BsgI	GTGCAG	1 cut(s)	405
Bsh1236I	CGCG	2 cut(s)	19, 191
BshFI	GGCC	6 cut(s)	275, 517, 675, 1030, 1418, 1647
BshNI	GGYRCC	1 cut(s)	142
BshVI	ATCGAT	2 cut(s)	1184, 1731
BsiSI	CCGG	3 cut(s)	146, 1826, 2127
BslFI	GGGAC	2 cut(s)	584, 1184
BslI	CCNNNNNNNGG	6 cut(s)	127, 152, 1355, 1603, 2076, 2126
BsmAI	GTCTC	6 cut(s)	67, 294, 764, 1928, 2135, 2153
BsmFI	GGGAC	2 cut(s)	584, 1184
BsmI	GAATGC	1 cut(s)	86
BsnI	GGCC	6 cut(s)	275, 517, 675, 1030, 1418, 1647
Bso31I	GGTCTC	2 cut(s)	764, 2135
Bsp1286I	GDGCHC	1 cut(s)	58
Bsp19I	CCATGG	1 cut(s)	1536
BspACI	CCGC	7 cut(s)	17, 641, 718, 774, 863, 1594, 1603
BspANI	GGCC	6 cut(s)	275, 517, 675, 1030, 1418, 1647
BspCNI	CTCAG	8 cut(s)	85, 124, 735, 760, 979, 1195, 1223, 2028
BspDI	ATCGAT	2 cut(s)	1184, 1731
BspFNI	CGCG	2 cut(s)	19, 191
BspHI	TCATGA	1 cut(s)	1135
BspLI	GGNNCC	6 cut(s)	25, 55, 132, 144, 197, 1716
BspMAI	CTGCAG	1 cut(s)	1602
BspPI	GGATC	5 cut(s)	593, 1307, 1709, 1722, 1987
BspT107I	GGYRCC	1 cut(s)	142
BspTI	CTTAAG	1 cut(s)	724
BspTNI	GGTCTC	2 cut(s)	764, 2135
BsrDI	GCAATG	1 cut(s)	783
BsrI	ACTGG	1 cut(s)	1261
BssECI	CCNNGG	5 cut(s)	49, 151, 199, 1167, 1536
BssNI	GRCGYC	1 cut(s)	869
BssT1I	CCWWGG	3 cut(s)	151, 199, 1536
Bst2UI	CCWGG	4 cut(s)	522, 1032, 1073, 1168
Bst4CI	ACNGT	6 cut(s)	405, 439, 466, 587, 1131, 1544
Bst6I	CTCTTC	3 cut(s)	690, 1824, 2156
BstACI	GRCGYC	1 cut(s)	869
BstAFI	CTTAAG	1 cut(s)	724
BstAPI	GCANNNNNTGC	1 cut(s)	476
BstC8I	GCNNGC	4 cut(s)	108, 563, 1416, 1598
BstDSI	CCRYGG	1 cut(s)	1536
BstF5I	GGATG	2 cut(s)	296, 794
BstFNI	CGCG	2 cut(s)	19, 191
BstMAI	GTCTC	6 cut(s)	67, 294, 764, 1928, 2135, 2153
BstMWI	GCNNNNNNNGC	5 cut(s)	476, 658, 667, 866, 1301
BstNI	CCWGG	4 cut(s)	522, 1032, 1073, 1168
BstNSI	RCATGY	3 cut(s)	428, 565, 1394
BstSCI	CCNGG	4 cut(s)	520, 1030, 1071, 1166
BstSFI	CTRYAG	2 cut(s)	345, 1598
BstUI	CGCG	2 cut(s)	19, 191
BstV1I	GCAGC	8 cut(s)	238, 721, 847, 938, 1165, 1279, 1384, 1612
BstX2I	RGATCY	4 cut(s)	615, 1206, 1312, 1714
BstXI	CCANNNNNNTGG	1 cut(s)	1478
BstYI	RGATCY	4 cut(s)	615, 1206, 1312, 1714
Bsu15I	ATCGAT	2 cut(s)	1184, 1731
BsuI	GTATCC	1 cut(s)	1983
BsuRI	GGCC	6 cut(s)	275, 517, 675, 1030, 1418, 1647
BsuTUI	ATCGAT	2 cut(s)	1184, 1731
BtgI	CCRYGG	1 cut(s)	1536
BtsCI	GGATG	2 cut(s)	296, 794
BtsI	GCAGTG	2 cut(s)	1036, 2080
BtsIMutI	CAGTG	5 cut(s)	435, 471, 1036, 1549, 2080
Cac8I	GCNNGC	4 cut(s)	108, 563, 1416, 1598
CciI	TCATGA	1 cut(s)	1135
Cfr13I	GGNCC	3 cut(s)	148, 196, 674
ClaI	ATCGAT	2 cut(s)	1184, 1731
CseI	GACGC	2 cut(s)	676, 858
Csp6I	GTAC	4 cut(s)	320, 1127, 1199, 1650
CviAII	CATG	8 cut(s)	217, 425, 562, 923, 1136, 1218, 1391, 1537
CviQI	GTAC	4 cut(s)	320, 1127, 1199, 1650
DraI	TTTAAA	1 cut(s)	1228
DrdI	GACNNNNNNGTC	1 cut(s)	2145
DseDI	GACNNNNNNGTC	1 cut(s)	2145
EaeI	YGGCCR	2 cut(s)	1416, 1645
Eam1104I	CTCTTC	3 cut(s)	690, 1824, 2156
EarI	CTCTTC	3 cut(s)	690, 1824, 2156
EciI	GGCGGA	1 cut(s)	656
Eco130I	CCWWGG	3 cut(s)	151, 199, 1536
Eco147I	AGGCCT	1 cut(s)	275
Eco24I	GRGCYC	1 cut(s)	58
Eco31I	GGTCTC	2 cut(s)	764, 2135
Eco32I	GATATC	1 cut(s)	1337
Eco47I	GGWCC	2 cut(s)	148, 196
Eco57I	CTGAAG	2 cut(s)	239, 282
EcoO109I	RGGNCCY	2 cut(s)	196, 674
EcoRII	CCWGG	4 cut(s)	520, 1030, 1071, 1166
EcoRV	GATATC	1 cut(s)	1337
EcoT14I	CCWWGG	3 cut(s)	151, 199, 1536
EcoT22I	ATGCAT	2 cut(s)	567, 783
EcoT38I	GRGCYC	1 cut(s)	58
ErhI	CCWWGG	3 cut(s)	151, 199, 1536
FaeI	CATG	8 cut(s)	220, 428, 565, 926, 1139, 1221, 1394, 1540
FalI	AAGNNNNNCTT	2 cut(s)	1086, 1118
FaqI	GGGAC	2 cut(s)	584, 1184
FatI	CATG	8 cut(s)	216, 424, 561, 922, 1135, 1217, 1390, 1536
FauI	CCCGC	2 cut(s)	711, 1596
FauNDI	CATATG	1 cut(s)	1491
FbaI	TGATCA	2 cut(s)	339, 937
FblI	GTMKAC	1 cut(s)	2137
Fnu4HI	GCNGC	8 cut(s)	227, 735, 861, 927, 1179, 1293, 1398, 1601
FokI	GGATG	2 cut(s)	303, 781
FriOI	GRGCYC	1 cut(s)	58
Fsp4HI	GCNGC	8 cut(s)	227, 735, 861, 927, 1179, 1293, 1398, 1601
FspBI	CTAG	5 cut(s)	671, 1079, 1280, 1529, 2145
GluI	GCNGC	8 cut(s)	227, 735, 861, 927, 1179, 1293, 1398, 1601
HaeIII	GGCC	6 cut(s)	275, 517, 675, 1030, 1418, 1647
HapII	CCGG	3 cut(s)	146, 1826, 2127
HgaI	GACGC	2 cut(s)	676, 858
Hin1I	GRCGYC	1 cut(s)	869
Hin1II	CATG	8 cut(s)	220, 428, 565, 926, 1139, 1221, 1394, 1540
HincII	GTYRAC	5 cut(s)	187, 1084, 1113, 1192, 2138
HindII	GTYRAC	5 cut(s)	187, 1084, 1113, 1192, 2138
HindIII	AAGCTT	2 cut(s)	785, 1707
HinfI	GANTC	5 cut(s)	75, 137, 711, 1322, 2089
HpaI	GTTAAC	1 cut(s)	1192
HpaII	CCGG	3 cut(s)	146, 1826, 2127
HphI	GGTGA	4 cut(s)	110, 1061, 1711, 1846
Hpy166II	GTNNAC	7 cut(s)	118, 187, 1084, 1113, 1192, 2048, 2138
Hpy8I	GTNNAC	7 cut(s)	118, 187, 1084, 1113, 1192, 2048, 2138
Hpy99I	CGWCG	1 cut(s)	2139
HpyAV	CCTTC	6 cut(s)	257, 1145, 1440, 1555, 1765, 1962
HpyCH4III	ACNGT	6 cut(s)	405, 439, 466, 587, 1131, 1544
HpyCH4IV	ACGT	2 cut(s)	1642, 1816
HpyF10VI	GCNNNNNNNGC	5 cut(s)	476, 658, 667, 866, 1301
HpySE526I	ACGT	2 cut(s)	1642, 1816
Hsp92I	GRCGYC	1 cut(s)	869
Hsp92II	CATG	8 cut(s)	220, 428, 565, 926, 1139, 1221, 1394, 1540
Ksp22I	TGATCA	2 cut(s)	339, 937
KspAI	GTTAAC	1 cut(s)	1192
LmnI	GCTCC	4 cut(s)	29, 53, 218, 857
Lsp1109I	GCAGC	8 cut(s)	238, 721, 847, 938, 1165, 1279, 1384, 1612
LweI	GCATC	4 cut(s)	466, 574, 1087, 1190
MaeI	CTAG	5 cut(s)	671, 1079, 1280, 1529, 2145
MaeII	ACGT	2 cut(s)	1642, 1816
MaeIII	GTNAC	4 cut(s)	870, 1034, 1821, 1978
MfeI	CAATTG	1 cut(s)	1401
MflI	RGATCY	4 cut(s)	615, 1206, 1312, 1714
MhlI	GDGCHC	1 cut(s)	58
MlsI	TGGCCA	1 cut(s)	1418
MluNI	TGGCCA	1 cut(s)	1418
MlyI	GAGTC	2 cut(s)	69, 131
MmeI	TCCRAC	3 cut(s)	51, 530, 1033
Mox20I	TGGCCA	1 cut(s)	1418
Mph1103I	ATGCAT	2 cut(s)	567, 783
MroXI	GAANNNNTTC	3 cut(s)	539, 992, 1569
MscI	TGGCCA	1 cut(s)	1418
MslI	CAYNNNNRTG	2 cut(s)	164, 1494
Msp20I	TGGCCA	1 cut(s)	1418
MspA1I	CMGCKG	2 cut(s)	1603, 1757
MspCI	CTTAAG	1 cut(s)	724
MspI	CCGG	3 cut(s)	146, 1826, 2127
MspR9I	CCNGG	4 cut(s)	522, 1032, 1073, 1168
MunI	CAATTG	1 cut(s)	1401
Mva1269I	GAATGC	1 cut(s)	86
MvaI	CCWGG	4 cut(s)	522, 1032, 1073, 1168
MvnI	CGCG	2 cut(s)	19, 191
MwoI	GCNNNNNNNGC	5 cut(s)	476, 658, 667, 866, 1301
NcoI	CCATGG	1 cut(s)	1536
NdeI	CATATG	1 cut(s)	1491
NlaIII	CATG	8 cut(s)	220, 428, 565, 926, 1139, 1221, 1394, 1540
NlaIV	GGNNCC	6 cut(s)	25, 55, 132, 144, 197, 1716
NmuCI	GTSAC	2 cut(s)	870, 1034
NsiI	ATGCAT	2 cut(s)	567, 783
NspI	RCATGY	3 cut(s)	428, 565, 1394
PaeI	GCATGC	1 cut(s)	565
PagI	TCATGA	1 cut(s)	1135
PceI	AGGCCT	1 cut(s)	275
PciI	ACATGT	1 cut(s)	1390
PctI	GAATGC	1 cut(s)	86
PdmI	GAANNNNTTC	3 cut(s)	539, 992, 1569
PfeI	GAWTC	3 cut(s)	711, 1322, 2089
PflMI	CCANNNNNTGG	1 cut(s)	1355
PkrI	GCNGC	8 cut(s)	228, 736, 862, 928, 1180, 1294, 1399, 1602
PleI	GAGTC	2 cut(s)	69, 131
PpsI	GAGTC	2 cut(s)	69, 131
PpuMI	RGGWCCY	1 cut(s)	196
PscI	ACATGT	1 cut(s)	1390
PshBI	ATTAAT	1 cut(s)	1941
Psp5II	RGGWCCY	1 cut(s)	196
Psp6I	CCWGG	4 cut(s)	520, 1030, 1071, 1166
PspGI	CCWGG	4 cut(s)	520, 1030, 1071, 1166
PspN4I	GGNNCC	6 cut(s)	25, 55, 132, 144, 197, 1716
PspPI	GGNCC	3 cut(s)	148, 196, 674
PspPPI	RGGWCCY	1 cut(s)	196
PstI	CTGCAG	1 cut(s)	1602
PsuI	RGATCY	4 cut(s)	615, 1206, 1312, 1714
PvuII	CAGCTG	1 cut(s)	1757
RsaI	GTAC	4 cut(s)	321, 1128, 1200, 1651
RsaNI	GTAC	4 cut(s)	320, 1127, 1199, 1650
RseI	CAYNNNNRTG	2 cut(s)	164, 1494
SalI	GTCGAC	1 cut(s)	2136
SatI	GCNGC	8 cut(s)	227, 735, 861, 927, 1179, 1293, 1398, 1601
Sau96I	GGNCC	3 cut(s)	148, 196, 674
SchI	GAGTC	2 cut(s)	69, 131
ScrFI	CCNGG	4 cut(s)	522, 1032, 1073, 1168
SduI	GDGCHC	1 cut(s)	58
SfaNI	GCATC	4 cut(s)	466, 574, 1087, 1190
SfcI	CTRYAG	2 cut(s)	345, 1598
SinI	GGWCC	2 cut(s)	148, 196
SmiI	ATTTAAAT	1 cut(s)	1228
SmiMI	CAYNNNNRTG	2 cut(s)	164, 1494
SmlI	CTYRAG	1 cut(s)	724
SmoI	CTYRAG	1 cut(s)	724
SpeI	ACTAGT	1 cut(s)	1078
SphI	GCATGC	1 cut(s)	565
SseBI	AGGCCT	1 cut(s)	275
SsiI	CCGC	7 cut(s)	17, 641, 718, 774, 863, 1594, 1603
SspI	AATATT	2 cut(s)	1433, 1906
SspMI	CTAG	5 cut(s)	671, 1079, 1280, 1529, 2145
StuI	AGGCCT	1 cut(s)	275
StyD4I	CCNGG	4 cut(s)	520, 1030, 1071, 1166
StyI	CCWWGG	3 cut(s)	151, 199, 1536
SwaI	ATTTAAAT	1 cut(s)	1228
TaaI	ACNGT	6 cut(s)	405, 439, 466, 587, 1131, 1544
TaiI	ACGT	2 cut(s)	1645, 1819
TaqI	TCGA	6 cut(s)	333, 452, 1184, 1428, 1731, 2137
TfiI	GAWTC	3 cut(s)	711, 1322, 2089
TscAI	CASTG	5 cut(s)	442, 471, 1043, 1549, 2080
TseFI	GTSAC	2 cut(s)	870, 1034
TseI	GCWGC	8 cut(s)	226, 734, 860, 926, 1178, 1292, 1397, 1600
Tsp45I	GTSAC	2 cut(s)	870, 1034
TspDTI	ATGAA	8 cut(s)	148, 368, 783, 911, 1001, 1152, 1251, 1335
TspGWI	ACGGA	5 cut(s)	536, 679, 1114, 1985, 2123
TspRI	CASTG	5 cut(s)	442, 471, 1043, 1549, 2080
Van91I	CCANNNNNTGG	1 cut(s)	1355
Vha464I	CTTAAG	1 cut(s)	724
VpaK11BI	GGWCC	2 cut(s)	148, 196
VspI	ATTAAT	1 cut(s)	1941
XapI	RAATTY	5 cut(s)	374, 1160, 1223, 1453, 1621
XbaI	TCTAGA	1 cut(s)	1528
XceI	RCATGY	3 cut(s)	428, 565, 1394
XcmI	CCANNNNNNNNNTGG	1 cut(s)	826
XmiI	GTMKAC	1 cut(s)	2137
XmnI	GAANNNNTTC	3 cut(s)	539, 992, 1569
XspI	CTAG	5 cut(s)	671, 1079, 1280, 1529, 2145
Zsp2I	ATGCAT	2 cut(s)	567, 783

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.