Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002344

Physical Location & Seq

Genomic Coordinates Forward (+)

9713236 .. 9719187

Gene Structure 5952 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG117300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2181 bp

ATGGCGGTAACATCCCTCAGAGGCAACAATCACTTGTTATCTCGCCTCAAACTCCTTCTTAACCAGCAACAGGTGCTCTCTTCTTCTTCTTCTTCTTCTTCCCCTATCTGCTTTTTCATTGAGGCATTTCGTCGAACACTTGGTGACCATGGTTTTGAACACAGCAGAGACTCGCCCACACGCTCTCCGAAGGCCCTCAGTCCCGCCCTAAAATGGTTCCTGAGTCGGTCCATGAAGAGGGTACGTCGATTCAGCATTGGGGCAAATGTGAAAGCCTCTAATAGCTTCTTGATTGTGTATGTTGTAATTTTCAATTGTGGATTGTTAGGGTTGATTGACATGTCGAAATGGAGAAAGGTGGATTCCAGGGTGTTTGGGATAACACGGTCCATGATTCCCGAGCCATCTTGGAACGTCTTGAGAATACTTCGAAGGGAAGGGTTTGAAGCCTACTTAGTGGGCGGATGTGTGAGGGACTTAATCCTGAAAAGAATTCCTAAAGACTTTGACGTGATCACTACAGCTAATCTTAAGCAGATCAAGAGGCAGTTCCATCGTGCACAAATTGTCGGACAACGATTTCCTATATGTATGGTGCATATTAAAGGTTCTGTCATAGAGGTATCCAGTTTTGAAACGGTGGCAAAAGCAAAACACTCTGATAAAGAAGTTACTTTCTCTCAAATGCCAAAGGGCTGTGATAAGAAAGATTTCATCCGCTGGAGAAACAGCATGCATCGAGACTTCACAATTAACAGTTTGTTCTTTGATCCTTTATCAAATAAAATATTTGATTATGCAAATGGAATGGCGGATTTGAGATCCTCAAAGCTACGGTCGTTAGGCTCCGCCAAGTTGTCATTTAAAGAGGATTGCGCAAGAATTTTACGTGGCTTAAGAATTGCTGCTCGTCTGAGTTTGAAAATTTCAAAAGAAACCGAGACAGCTATACATAAGTTTTCTTCATCCATTTCGACATTGGCAACGAGTAGAATTATGATGGAAATGAACTATATGCTTTCTTATGGAGCTGCTGAGCCATCTCTCTGTCTGCTTTGGGAATTCAATCTACTCAGAGTTCTACTTCCAATTCATGCAGCATACTTGGATGAACAGAGGATTAGGAAGTTTCCTCAGAATTCCACGATGTTGATGAAACTATTCTTTAATTTGGATAAAGTTGTCACGGTTGATCGACCTTCTGACTGCAGTTTATGGGTAGCTCTGTTGGCTTTTCACATGGCACTGGTCAGTCACCCTCAAGACGCTCTTGTGGTGTTCACCTTTGCTTCTGTCCTGTATCATGGGGGATGCAAAAAGGGTCTTACATTTGCTAGAGACAATGCTCAAGTGATAGTTGACTATCTACCTGAGATATCAAGTTCATCTGCATGTAAATCAGAGGAAGAGCTTGAAAAAGAAGTTTCCTTATTGGCCTCTCTTGTTTTAGATTCTATTGCTGCTCTAACTGCAACTGAGAGTCTTGTCGAAACGATGTCTAAGTATCCTGAATCTCCATGCTCTGGATTGGTATTTGTACCAAAGAAAACGGCCCAAGGTGTTGCTGAAATTTTTAGAGTTCTGGCCGACGACATCAAATCTTACAATAGAGAAAGAAAAAGTTATGAAATTGATTACCCTGTACTTCGGAAAGGTTTTCTGCACGAGACAAGATTTGTGCTTGGCAAAATTATTTTAGAAACCATGAGCAGTAGTATTTTGAAAGGGGAGGAATTTGTTCAGGAGGACTACCAACACCTGGAGCAGGAGAGCATTAAGGAAAATTGCAATAAGGGTAAAAAACGTGGCCTTAAACCTGATACTCCTAAACTAAAACAAGAGTTTGTGAAGAAACATAAGTTGGTCGAAAGGAAATGCAGACCGTTGGAGCAAGAGATGGACATTGATAACCAAGATGCTGTAATATTATCACAATTGGTTTCAGTTCCGAGACATAATGTAGAGAAGGAAACATGCCAGTTGCTTGAAGAGAAGGTGATAAAGAAAAAACATAAGGCAACGAAGCAGCAACTAAAGACAGTTGAGAAGAATAATGACAAGGAGAATGACAGTCTATCTAGTCTCTTGAGCGGTGAGAAGATACAGAAACGCAAAGAAGTACCAGACAAGGGGGAGAAAAGCAGTCAACTTCGAGTGTCTAGTCTCTTCAAGAAAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004652 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006276 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031124 GO:0034641 GO:0043170 GO:0043412 GO:0043631 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0070566 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

726

Amino Acids

82.61

Weight (kDa)

9.54

Isoelectric Point (pI)

50.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PolyA_pol	PF01743	150 - 279	7.4e-25	Poly A polymerase head domain
PolyA_pol_RNAbd	PF12627	307 - 368	4.7e-15	Probable RNA and SrmB- binding site of polymerase A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17580
fragaria_vesca	FvH4_1g10510 FvH4_1g10510 FvH4_1g10510 FvH4_1g10510 FvH4_1g29700
malus_domestica	MD02G1119000.v1.1 MD15G1233000.v1.1
prunus_persica	Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1
pyrus_communis	pycom02g09260 pycom02g09270 pycom15g20750
rosa_chinensis	RchiOBHm_Chr2g0097411 RchiOBHm_Chr2g0097511 RchiOBHm_Chr3g0465401
rosa_laevigata	RLG00000016724
rosa_multiflora	Rmu_sc0001060.1_g000002 Rmu_sc0004220.1_g000008 Rmu_sc0011781.1_g000006
rosa_roxburghii	Rroxscaffold_2G00144710
rosa_rugosa	Rorug02G0066800 Rorug02G0066800 Rorug02G0066800
rosa_samantha	Rh2AG113200 Rh2BG116200 Rh2BG116300 Rh2CG118200 Rh2CG118300 Rh2DG117300 Rh3BG141600 Rh3CG142700 Rh3DG142700
rosa_wichuraiana	Rw2G008870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	877
AccB7I	CCANNNNNTGG	2 cut(s)	1523, 1759
AccBSI	CCGCTC	1 cut(s)	2091
AciI	CCGC	7 cut(s)	5, 204, 462, 718, 812, 849, 2091
AclWI	GGATC	2 cut(s)	764, 816
AcoI	YGGCCR	1 cut(s)	1584
AcsI	RAATTY	7 cut(s)	492, 882, 924, 1061, 1138, 1569, 1733
AdeI	CACNNNGTG	1 cut(s)	143
AfaI	GTAC	4 cut(s)	243, 1539, 1644, 2121
AfiI	CCNNNNNNNGG	7 cut(s)	70, 213, 237, 1523, 1759, 1765, 2129
AflII	CTTAAG	2 cut(s)	530, 895
AflIII	ACRYGT	1 cut(s)	339
AjiI	CACGTC	1 cut(s)	511
AjnI	CCWGG	2 cut(s)	365, 1758
AjuI	GAANNNNNNNTTGG	2 cut(s)	1844, 1876
AluBI	AGCT	7 cut(s)	285, 524, 832, 947, 1031, 1223, 1411
AluI	AGCT	7 cut(s)	285, 524, 832, 947, 1031, 1223, 1411
Alw21I	GWGCWC	2 cut(s)	78, 562
Alw26I	GTCTC	8 cut(s)	162, 735, 935, 1332, 1661, 1945, 2087, 2168
Alw44I	GTGCAC	1 cut(s)	558
AlwI	GGATC	2 cut(s)	764, 816
Ama87I	CYCGRG	1 cut(s)	398
AoxI	GGCC	5 cut(s)	192, 1434, 1551, 1584, 1807
ApaLI	GTGCAC	1 cut(s)	558
ApeKI	GCWGC	5 cut(s)	905, 1031, 1097, 1460, 2026
ApoI	RAATTY	7 cut(s)	492, 882, 924, 1061, 1138, 1569, 1733
ArsI	GACNNNNNNTTYG	4 cut(s)	137, 169, 821, 853
Asp700I	GAANNNNTTC	3 cut(s)	710, 1160, 1737
AspLEI	GCGC	1 cut(s)	878
AspS9I	GGNCC	4 cut(s)	193, 228, 387, 1552
AsuHPI	GGTGA	5 cut(s)	155, 1247, 1273, 2008, 2105
AsuII	TTCGAA	1 cut(s)	430
AvaI	CYCGRG	1 cut(s)	398
AvaII	GGWCC	2 cut(s)	228, 387
BaeGI	GKGCMC	1 cut(s)	562
BauI	CACGAG	1 cut(s)	1664
Bbv12I	GWGCWC	2 cut(s)	78, 562
BbvI	GCAGC	5 cut(s)	892, 1018, 1109, 1447, 2038
BccI	CCATC	5 cut(s)	412, 561, 994, 1048, 1891
BceAI	ACGGC	1 cut(s)	1566
BcgI	CGANNNNNNTGC	2 cut(s)	536, 570
BciT130I	CCWGG	2 cut(s)	367, 1760
BciVI	GTATCC	2 cut(s)	634, 1515
BclI	TGATCA	1 cut(s)	513
BcoDI	GTCTC	8 cut(s)	162, 735, 935, 1332, 1661, 1945, 2087, 2168
BfaI	CTAG	3 cut(s)	1335, 2079, 2160
BfmI	CTRYAG	2 cut(s)	519, 1207
BfrI	CTTAAG	2 cut(s)	530, 895
BfuI	GTATCC	2 cut(s)	634, 1515
BisI	GCNGC	5 cut(s)	906, 1032, 1098, 1461, 2027
BlpI	GCTNAGC	1 cut(s)	1035
BlsI	GCNGC	5 cut(s)	907, 1033, 1099, 1462, 2028
Bme1390I	CCNGG	2 cut(s)	367, 1760
Bme18I	GGWCC	2 cut(s)	228, 387
BmeT110I	CYCGRG	1 cut(s)	398
BmgBI	CACGTC	1 cut(s)	511
BmgT120I	GGNCC	4 cut(s)	193, 228, 387, 1552
BmiI	GGNNCC	2 cut(s)	218, 847
BmrFI	CCNGG	2 cut(s)	367, 1760
BmsI	GCATC	3 cut(s)	745, 1301, 1906
BpmI	CTGGAG	2 cut(s)	742, 1781
Bpu1102I	GCTNAGC	1 cut(s)	1035
Bpu14I	TTCGAA	1 cut(s)	430
BpuEI	CTTGAG	4 cut(s)	439, 1245, 1332, 2107
BsaAI	YACGTR	1 cut(s)	890
BsaJI	CCNNGG	3 cut(s)	148, 366, 1555
BsaXI	ACNNNNNCTCC	2 cut(s)	169, 199
Bsc4I	CCNNNNNNNGG	7 cut(s)	70, 213, 237, 1523, 1759, 1765, 2129
Bse1I	ACTGG	3 cut(s)	627, 1251, 1978
BseBI	CCWGG	2 cut(s)	367, 1760
BseDI	CCNNGG	3 cut(s)	148, 366, 1555
BseGI	GGATG	6 cut(s)	11, 470, 714, 965, 1114, 1316
BseLI	CCNNNNNNNGG	7 cut(s)	70, 213, 237, 1523, 1759, 1765, 2129
BseMII	CTCAG	9 cut(s)	31, 211, 212, 905, 1026, 1087, 1148, 1362, 1467
BseNI	ACTGG	3 cut(s)	627, 1251, 1978
BseSI	GKGCMC	1 cut(s)	562
BseXI	GCAGC	5 cut(s)	892, 1018, 1109, 1447, 2038
BsgI	GTGCAG	1 cut(s)	1646
Bsh1285I	CGRYCG	1 cut(s)	839
BshFI	GGCC	5 cut(s)	194, 1436, 1553, 1586, 1809
BsiEI	CGRYCG	1 cut(s)	839
BsiHKAI	GWGCWC	2 cut(s)	78, 562
BsiHKCI	CYCGRG	1 cut(s)	398
BslFI	GGGAC	2 cut(s)	186, 488
BslI	CCNNNNNNNGG	7 cut(s)	70, 213, 237, 1523, 1759, 1765, 2129
BsmAI	GTCTC	8 cut(s)	162, 735, 935, 1332, 1661, 1945, 2087, 2168
BsmFI	GGGAC	2 cut(s)	186, 488
BsnI	GGCC	5 cut(s)	194, 1436, 1553, 1586, 1809
BsoBI	CYCGRG	1 cut(s)	398
Bsp119I	TTCGAA	1 cut(s)	430
Bsp1286I	GDGCHC	2 cut(s)	78, 562
Bsp143I	GATC	5 cut(s)	513, 537, 769, 821, 1192
Bsp1720I	GCTNAGC	1 cut(s)	1035
Bsp19I	CCATGG	1 cut(s)	148
BspACI	CCGC	7 cut(s)	5, 204, 462, 718, 812, 849, 2091
BspANI	GGCC	5 cut(s)	194, 1436, 1553, 1586, 1809
BspCNI	CTCAG	9 cut(s)	30, 210, 213, 906, 1027, 1086, 1147, 1363, 1468
BspLI	GGNNCC	2 cut(s)	218, 847
BspMAI	CTGCAG	1 cut(s)	1211
BspPI	GGATC	2 cut(s)	764, 816
BspQI	GCTCTTC	1 cut(s)	1401
BspT104I	TTCGAA	1 cut(s)	430
BspTI	CTTAAG	2 cut(s)	530, 895
BsrBI	CCGCTC	1 cut(s)	2091
BsrI	ACTGG	3 cut(s)	627, 1251, 1978
BssECI	CCNNGG	3 cut(s)	148, 366, 1555
BssMI	GATC	5 cut(s)	513, 537, 769, 821, 1192
BssSI	CACGAG	1 cut(s)	1664
BssT1I	CCWWGG	2 cut(s)	148, 1555
Bst2BI	CACGAG	1 cut(s)	1664
Bst2UI	CCWGG	2 cut(s)	367, 1760
Bst4CI	ACNGT	8 cut(s)	387, 640, 758, 837, 1189, 1884, 2041, 2072
Bst6I	CTCTTC	5 cut(s)	85, 230, 1401, 1983, 2171
BstAFI	CTTAAG	2 cut(s)	530, 895
BstAPI	GCANNNNNTGC	1 cut(s)	73
BstBAI	YACGTR	1 cut(s)	890
BstBI	TTCGAA	1 cut(s)	430
BstC8I	GCNNGC	1 cut(s)	734
BstDSI	CCRYGG	1 cut(s)	148
BstEII	GGTNACC	1 cut(s)	143
BstENI	CCTNNNNNAGG	1 cut(s)	1763
BstF5I	GGATG	6 cut(s)	11, 470, 714, 965, 1114, 1316
BstHHI	GCGC	1 cut(s)	878
BstKTI	GATC	5 cut(s)	516, 540, 772, 824, 1195
BstMAI	GTCTC	8 cut(s)	162, 735, 935, 1332, 1661, 1945, 2087, 2168
BstMBI	GATC	5 cut(s)	513, 537, 769, 821, 1192
BstMCI	CGRYCG	1 cut(s)	839
BstMWI	GCNNNNNNNGC	3 cut(s)	73, 1229, 1469
BstNI	CCWGG	2 cut(s)	367, 1760
BstNSI	RCATGY	4 cut(s)	343, 736, 1395, 1977
BstPI	GGTNACC	1 cut(s)	143
BstSCI	CCNGG	2 cut(s)	365, 1758
BstSFI	CTRYAG	2 cut(s)	519, 1207
BstSLI	GKGCMC	1 cut(s)	562
BstV1I	GCAGC	5 cut(s)	892, 1018, 1109, 1447, 2038
BstX2I	RGATCY	1 cut(s)	821
BstYI	RGATCY	1 cut(s)	821
BsuI	GTATCC	2 cut(s)	634, 1515
BsuRI	GGCC	5 cut(s)	194, 1436, 1553, 1586, 1809
BtgI	CCRYGG	1 cut(s)	148
BtrI	CACGTC	1 cut(s)	511
BtsCI	GGATG	6 cut(s)	11, 470, 714, 965, 1114, 1316
BtsIMutI	CAGTG	1 cut(s)	1244
Cac8I	GCNNGC	1 cut(s)	734
CfoI	GCGC	1 cut(s)	878
Cfr13I	GGNCC	4 cut(s)	193, 228, 387, 1552
CseI	GACGC	1 cut(s)	1274
Csp6I	GTAC	4 cut(s)	242, 1538, 1643, 2120
CviQI	GTAC	4 cut(s)	242, 1538, 1643, 2120
DpnI	GATC	5 cut(s)	515, 539, 771, 823, 1194
DpnII	GATC	5 cut(s)	513, 537, 769, 821, 1192
DraI	TTTAAA	1 cut(s)	865
DraIII	CACNNNGTG	1 cut(s)	143
EaeI	YGGCCR	1 cut(s)	1584
Eam1104I	CTCTTC	5 cut(s)	85, 230, 1401, 1983, 2171
EarI	CTCTTC	5 cut(s)	85, 230, 1401, 1983, 2171
EciI	GGCGGA	3 cut(s)	477, 827, 838
Eco130I	CCWWGG	2 cut(s)	148, 1555
Eco32I	GATATC	1 cut(s)	1377
Eco47I	GGWCC	2 cut(s)	228, 387
Eco88I	CYCGRG	1 cut(s)	398
Eco91I	GGTNACC	1 cut(s)	143
EcoNI	CCTNNNNNAGG	1 cut(s)	1763
EcoO109I	RGGNCCY	1 cut(s)	193
EcoO65I	GGTNACC	1 cut(s)	143
EcoRI	GAATTC	3 cut(s)	492, 1061, 1138
EcoRII	CCWGG	2 cut(s)	365, 1758
EcoRV	GATATC	1 cut(s)	1377
EcoT14I	CCWWGG	2 cut(s)	148, 1555
EcoT22I	ATGCAT	1 cut(s)	738
ErhI	CCWWGG	2 cut(s)	148, 1555
FalI	AAGNNNNNCTT	2 cut(s)	1254, 1286
FaqI	GGGAC	2 cut(s)	186, 488
FauI	CCCGC	1 cut(s)	211
FbaI	TGATCA	1 cut(s)	513
Fnu4HI	GCNGC	5 cut(s)	906, 1032, 1098, 1461, 2027
FokI	GGATG	5 cut(s)	477, 701, 952, 1121, 1323
Fsp4HI	GCNGC	5 cut(s)	906, 1032, 1098, 1461, 2027
FspBI	CTAG	3 cut(s)	1335, 2079, 2160
FspI	TGCGCA	1 cut(s)	877
GlaI	GCGC	1 cut(s)	877
GluI	GCNGC	5 cut(s)	906, 1032, 1098, 1461, 2027
GsuI	CTGGAG	2 cut(s)	742, 1781
HaeIII	GGCC	5 cut(s)	194, 1436, 1553, 1586, 1809
HgaI	GACGC	1 cut(s)	1274
HhaI	GCGC	1 cut(s)	878
Hin6I	GCGC	1 cut(s)	876
HinP1I	GCGC	1 cut(s)	876
HincII	GTYRAC	2 cut(s)	1360, 2147
HindII	GTYRAC	2 cut(s)	1360, 2147
HinfI	GANTC	8 cut(s)	170, 223, 249, 362, 394, 1451, 1480, 1511
HphI	GGTGA	5 cut(s)	155, 1247, 1273, 2008, 2105
Hpy166II	GTNNAC	4 cut(s)	560, 1281, 1360, 2147
Hpy8I	GTNNAC	4 cut(s)	560, 1281, 1360, 2147
Hpy99I	CGWCG	3 cut(s)	135, 249, 1592
HpyAV	CCTTC	7 cut(s)	65, 184, 426, 431, 1209, 1960, 1987
HpyCH4III	ACNGT	8 cut(s)	387, 640, 758, 837, 1189, 1884, 2041, 2072
HpyCH4IV	ACGT	5 cut(s)	244, 414, 510, 889, 1804
HpyF10VI	GCNNNNNNNGC	3 cut(s)	73, 1229, 1469
HpySE526I	ACGT	5 cut(s)	244, 414, 510, 889, 1804
HspAI	GCGC	1 cut(s)	876
Ksp22I	TGATCA	1 cut(s)	513
Kzo9I	GATC	5 cut(s)	513, 537, 769, 821, 1192
LguI	GCTCTTC	1 cut(s)	1401
LmnI	GCTCC	4 cut(s)	851, 1028, 1762, 1888
Lsp1109I	GCAGC	5 cut(s)	892, 1018, 1109, 1447, 2038
LweI	GCATC	3 cut(s)	745, 1301, 1906
MaeI	CTAG	3 cut(s)	1335, 2079, 2160
MaeII	ACGT	5 cut(s)	244, 414, 510, 889, 1804
MaeIII	GTNAC	5 cut(s)	7, 143, 670, 1183, 1253
MalI	GATC	5 cut(s)	515, 539, 771, 823, 1194
MbiI	CCGCTC	1 cut(s)	2091
MboI	GATC	5 cut(s)	513, 537, 769, 821, 1192
MfeI	CAATTG	2 cut(s)	313, 1934
MflI	RGATCY	1 cut(s)	821
MhlI	GDGCHC	2 cut(s)	78, 562
MlyI	GAGTC	3 cut(s)	164, 232, 1489
MmeI	TCCRAC	2 cut(s)	550, 1866
Mph1103I	ATGCAT	1 cut(s)	738
MroXI	GAANNNNTTC	3 cut(s)	710, 1160, 1737
MslI	CAYNNNNRTG	1 cut(s)	1390
MspA1I	CMGCKG	1 cut(s)	720
MspCI	CTTAAG	2 cut(s)	530, 895
MspR9I	CCNGG	2 cut(s)	367, 1760
MunI	CAATTG	2 cut(s)	313, 1934
MvaI	CCWGG	2 cut(s)	367, 1760
MwoI	GCNNNNNNNGC	3 cut(s)	73, 1229, 1469
NcoI	CCATGG	1 cut(s)	148
NdeII	GATC	5 cut(s)	513, 537, 769, 821, 1192
NlaIV	GGNNCC	2 cut(s)	218, 847
NmuCI	GTSAC	3 cut(s)	143, 1183, 1253
NsbI	TGCGCA	1 cut(s)	877
NsiI	ATGCAT	1 cut(s)	738
NspI	RCATGY	4 cut(s)	343, 736, 1395, 1977
NspV	TTCGAA	1 cut(s)	430
PaeI	GCATGC	1 cut(s)	736
PciI	ACATGT	1 cut(s)	339
PciSI	GCTCTTC	1 cut(s)	1401
PdmI	GAANNNNTTC	3 cut(s)	710, 1160, 1737
PfeI	GAWTC	5 cut(s)	249, 362, 394, 1451, 1511
PflMI	CCANNNNNTGG	2 cut(s)	1523, 1759
PkrI	GCNGC	5 cut(s)	907, 1033, 1099, 1462, 2028
PleI	GAGTC	3 cut(s)	164, 231, 1488
PpsI	GAGTC	3 cut(s)	164, 231, 1488
Ppu21I	YACGTR	1 cut(s)	890
PscI	ACATGT	1 cut(s)	339
Psp6I	CCWGG	2 cut(s)	365, 1758
PspEI	GGTNACC	1 cut(s)	143
PspGI	CCWGG	2 cut(s)	365, 1758
PspN4I	GGNNCC	2 cut(s)	218, 847
PspPI	GGNCC	4 cut(s)	193, 228, 387, 1552
PstI	CTGCAG	1 cut(s)	1211
PsuI	RGATCY	1 cut(s)	821
RsaI	GTAC	4 cut(s)	243, 1539, 1644, 2121
RsaNI	GTAC	4 cut(s)	242, 1538, 1643, 2120
RseI	CAYNNNNRTG	1 cut(s)	1390
SapI	GCTCTTC	1 cut(s)	1401
SatI	GCNGC	5 cut(s)	906, 1032, 1098, 1461, 2027
Sau3AI	GATC	5 cut(s)	513, 537, 769, 821, 1192
Sau96I	GGNCC	4 cut(s)	193, 228, 387, 1552
SchI	GAGTC	3 cut(s)	164, 232, 1489
ScrFI	CCNGG	2 cut(s)	367, 1760
SduI	GDGCHC	2 cut(s)	78, 562
SfaNI	GCATC	3 cut(s)	745, 1301, 1906
SfcI	CTRYAG	2 cut(s)	519, 1207
SfuI	TTCGAA	1 cut(s)	430
SinI	GGWCC	2 cut(s)	228, 387
SmiMI	CAYNNNNRTG	1 cut(s)	1390
SmlI	CTYRAG	6 cut(s)	418, 530, 895, 1260, 1347, 2086
SmoI	CTYRAG	6 cut(s)	418, 530, 895, 1260, 1347, 2086
SphI	GCATGC	1 cut(s)	736
SsiI	CCGC	7 cut(s)	5, 204, 462, 718, 812, 849, 2091
SspI	AATATT	2 cut(s)	789, 1926
SspMI	CTAG	3 cut(s)	1335, 2079, 2160
StyD4I	CCNGG	2 cut(s)	365, 1758
StyI	CCWWGG	2 cut(s)	148, 1555
TaaI	ACNGT	8 cut(s)	387, 640, 758, 837, 1189, 1884, 2041, 2072
TaiI	ACGT	5 cut(s)	247, 417, 513, 892, 1807
TaqII	GACCGA	1 cut(s)	216
TatI	WGTACW	1 cut(s)	1642
TfiI	GAWTC	5 cut(s)	249, 362, 394, 1451, 1511
TscAI	CASTG	1 cut(s)	1251
TseFI	GTSAC	3 cut(s)	143, 1183, 1253
TseI	GCWGC	5 cut(s)	905, 1031, 1097, 1460, 2026
Tsp45I	GTSAC	3 cut(s)	143, 1183, 1253
TspRI	CASTG	1 cut(s)	1251
Van91I	CCANNNNNTGG	2 cut(s)	1523, 1759
Vha464I	CTTAAG	2 cut(s)	530, 895
VneI	GTGCAC	1 cut(s)	558
VpaK11BI	GGWCC	2 cut(s)	228, 387
XagI	CCTNNNNNAGG	1 cut(s)	1763
XapI	RAATTY	7 cut(s)	492, 882, 924, 1061, 1138, 1569, 1733
XceI	RCATGY	4 cut(s)	343, 736, 1395, 1977
XcmI	CCANNNNNNNNNTGG	1 cut(s)	976
XmnI	GAANNNNTTC	3 cut(s)	710, 1160, 1737
XspI	CTAG	3 cut(s)	1335, 2079, 2160
Zsp2I	ATGCAT	1 cut(s)	738

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.