Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004220.1

Orthogroup ID

OG0002344

Physical Location & Seq

Genomic Coordinates Reverse (-)

32370 .. 34040

Gene Structure 1671 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004220.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

atggcactggtcagtcaccctcaagacgctcttgtggtgttcacctttgcttctgtcctgtatcatgggggatgcaaaaagggtcttacatttgctagagacaatgctcaagtgatagttgactatctaccagagatctcaagttcatctgcatgtaaatcagaggaagagcttgaaaaagaagtttccttattggcctctcttgttttagattctattgctgctctaactgcaactgagagtcttgtcgaaacgatgtctaagtatcctgaatctccatgctctggattggtatttgtaccaaagaaaacggcccaaggtgttgctgaaatttttagagttctggtcgacgacatcaaatcttacaatagagaaagaaaaagttatgaaattgattaccctgtacttaggaaaggttttctgcacgagacaagatttgtgcttggcaaaattattttagaaaccatgagcagtagtattctgaaaggggaggaatttgttcaggaggactaccgacacctggagcaggagagcattacggaaaattgcaataagggtaaaaaacgtggccttaaacctgatactcctaaactaaaacaagagtttgtgaagaaacacaagttggtcgaaaggaaatgcagaccgttggagcaagagatggacattgataaccaagatggtgtaatattatcacaattggtttcagttccgagacataatgtagagaaggaaacatggcagttacctgaagagaaggtgataaagaaaaaacataaggcaacgaagcagcagtgtgtaccatgggatgaggcaacgaagcagcaactaaagacagttgagaagaataatgacaaggagaatgaccgtctatctagtctcttgagcggtgagaagatacagaaacgcaaagaagtaccagacgagggggagaaaagcagtcaacttcgactgtctagtctcttcaagaaaacataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004652 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006276 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031124 GO:0034641 GO:0043170 GO:0043412 GO:0043631 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0070566 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

324

Amino Acids

36.88

Weight (kDa)

8.06

Isoelectric Point (pI)

46.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17580
fragaria_vesca	FvH4_1g10510 FvH4_1g10510 FvH4_1g10510 FvH4_1g10510 FvH4_1g29700
malus_domestica	MD02G1119000.v1.1 MD15G1233000.v1.1
prunus_persica	Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1
pyrus_communis	pycom02g09260 pycom02g09270 pycom15g20750
rosa_chinensis	RchiOBHm_Chr2g0097411 RchiOBHm_Chr2g0097511 RchiOBHm_Chr3g0465401
rosa_laevigata	RLG00000016724
rosa_multiflora	Rmu_sc0001060.1_g000002 Rmu_sc0004220.1_g000008 Rmu_sc0011781.1_g000006
rosa_roxburghii	Rroxscaffold_2G00144710
rosa_rugosa	Rorug02G0066800 Rorug02G0066800 Rorug02G0066800
rosa_samantha	Rh2AG113200 Rh2BG116200 Rh2BG116300 Rh2CG118200 Rh2CG118300 Rh2DG117300 Rh3BG141600 Rh3CG142700 Rh3DG142700
rosa_wichuraiana	Rw2G008870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	954
AccB7I	CCANNNNNTGG	1 cut(s)	284
AccBSI	CCGCTC	1 cut(s)	885
AccI	GTMKAC	1 cut(s)	348
AciI	CCGC	1 cut(s)	885
AcsI	RAATTY	2 cut(s)	330, 494
AcuI	CTGAAG	1 cut(s)	768
AfaI	GTAC	4 cut(s)	300, 405, 798, 915
AfiI	CCNNNNNNNGG	4 cut(s)	284, 520, 526, 923
AgsI	TTSAA	2 cut(s)	176, 964
AjnI	CCWGG	1 cut(s)	519
AjuI	GAANNNNNNNTTGG	2 cut(s)	605, 637
AluBI	AGCT	1 cut(s)	172
AluI	AGCT	1 cut(s)	172
Alw26I	GTCTC	5 cut(s)	93, 422, 706, 881, 962
AoxI	GGCC	3 cut(s)	195, 312, 568
ApeKI	GCWGC	3 cut(s)	221, 787, 820
ApoI	RAATTY	2 cut(s)	330, 494
Asp700I	GAANNNNTTC	1 cut(s)	498
AspS9I	GGNCC	1 cut(s)	313
AsuHPI	GGTGA	4 cut(s)	8, 34, 769, 899
BauI	CACGAG	1 cut(s)	425
BbvI	GCAGC	3 cut(s)	208, 799, 832
BccI	CCATC	2 cut(s)	652, 671
BceAI	ACGGC	1 cut(s)	327
BciT130I	CCWGG	1 cut(s)	521
BciVI	GTATCC	1 cut(s)	276
BcoDI	GTCTC	5 cut(s)	93, 422, 706, 881, 962
BfaI	CTAG	3 cut(s)	96, 873, 954
BfuI	GTATCC	1 cut(s)	276
BglII	AGATCT	1 cut(s)	135
BisI	GCNGC	3 cut(s)	222, 788, 821
BlsI	GCNGC	3 cut(s)	223, 789, 822
Bme1390I	CCNGG	1 cut(s)	521
BmgT120I	GGNCC	1 cut(s)	313
BmrFI	CCNGG	1 cut(s)	521
BmsI	GCATC	1 cut(s)	62
BpmI	CTGGAG	1 cut(s)	542
BpuEI	CTTGAG	4 cut(s)	6, 93, 124, 901
BsaJI	CCNNGG	2 cut(s)	316, 800
Bsc4I	CCNNNNNNNGG	4 cut(s)	284, 520, 526, 923
Bse1I	ACTGG	1 cut(s)	12
BseBI	CCWGG	1 cut(s)	521
BseDI	CCNNGG	2 cut(s)	316, 800
BseGI	GGATG	2 cut(s)	77, 811
BseLI	CCNNNNNNNGG	4 cut(s)	284, 520, 526, 923
BseMII	CTCAG	1 cut(s)	228
BseNI	ACTGG	1 cut(s)	12
BseXI	GCAGC	3 cut(s)	208, 799, 832
BsgI	GTGCAG	1 cut(s)	407
BshFI	GGCC	3 cut(s)	197, 314, 570
BslI	CCNNNNNNNGG	4 cut(s)	284, 520, 526, 923
BsmAI	GTCTC	5 cut(s)	93, 422, 706, 881, 962
BsnI	GGCC	3 cut(s)	197, 314, 570
Bsp143I	GATC	1 cut(s)	135
Bsp19I	CCATGG	1 cut(s)	800
BspACI	CCGC	1 cut(s)	885
BspANI	GGCC	3 cut(s)	197, 314, 570
BspCNI	CTCAG	1 cut(s)	229
BspQI	GCTCTTC	1 cut(s)	162
BsrBI	CCGCTC	1 cut(s)	885
BsrI	ACTGG	1 cut(s)	12
BssECI	CCNNGG	2 cut(s)	316, 800
BssMI	GATC	1 cut(s)	135
BssSI	CACGAG	1 cut(s)	425
BssT1I	CCWWGG	2 cut(s)	316, 800
Bst2BI	CACGAG	1 cut(s)	425
Bst2UI	CCWGG	1 cut(s)	521
Bst4CI	ACNGT	4 cut(s)	645, 835, 866, 951
Bst6I	CTCTTC	3 cut(s)	162, 744, 965
BstDEI	CTNAG	3 cut(s)	237, 261, 407
BstDSI	CCRYGG	1 cut(s)	800
BstENI	CCTNNNNNAGG	1 cut(s)	524
BstF5I	GGATG	2 cut(s)	77, 811
BstKTI	GATC	1 cut(s)	138
BstMAI	GTCTC	5 cut(s)	93, 422, 706, 881, 962
BstMBI	GATC	1 cut(s)	135
BstMWI	GCNNNNNNNGC	1 cut(s)	230
BstNI	CCWGG	1 cut(s)	521
BstNSI	RCATGY	1 cut(s)	156
BstSCI	CCNGG	1 cut(s)	519
BstV1I	GCAGC	3 cut(s)	208, 799, 832
BstX2I	RGATCY	1 cut(s)	135
BstYI	RGATCY	1 cut(s)	135
BsuI	GTATCC	1 cut(s)	276
BsuRI	GGCC	3 cut(s)	197, 314, 570
BtgI	CCRYGG	1 cut(s)	800
BtsCI	GGATG	2 cut(s)	77, 811
BtsI	GCAGTG	1 cut(s)	797
BtsIMutI	CAGTG	2 cut(s)	5, 797
Cfr13I	GGNCC	1 cut(s)	313
CseI	GACGC	1 cut(s)	35
Csp6I	GTAC	4 cut(s)	299, 404, 797, 914
CviAII	CATG	6 cut(s)	65, 153, 279, 466, 735, 801
CviJI	RGCY	4 cut(s)	172, 197, 314, 570
CviKI_1	RGCY	4 cut(s)	172, 197, 314, 570
CviQI	GTAC	4 cut(s)	299, 404, 797, 914
DdeI	CTNAG	3 cut(s)	237, 261, 407
DpnI	GATC	1 cut(s)	137
DpnII	GATC	1 cut(s)	135
DrdI	GACNNNNNNGTC	1 cut(s)	954
DseDI	GACNNNNNNGTC	1 cut(s)	954
Eam1104I	CTCTTC	3 cut(s)	162, 744, 965
EarI	CTCTTC	3 cut(s)	162, 744, 965
Eco130I	CCWWGG	2 cut(s)	316, 800
Eco57I	CTGAAG	1 cut(s)	768
EcoNI	CCTNNNNNAGG	1 cut(s)	524
EcoRII	CCWGG	1 cut(s)	519
EcoT14I	CCWWGG	2 cut(s)	316, 800
ErhI	CCWWGG	2 cut(s)	316, 800
FaeI	CATG	6 cut(s)	68, 156, 282, 469, 738, 804
FalI	AAGNNNNNCTT	2 cut(s)	15, 47
FatI	CATG	6 cut(s)	64, 152, 278, 465, 734, 800
FblI	GTMKAC	1 cut(s)	348
Fnu4HI	GCNGC	3 cut(s)	222, 788, 821
FokI	GGATG	2 cut(s)	84, 818
Fsp4HI	GCNGC	3 cut(s)	222, 788, 821
FspBI	CTAG	3 cut(s)	96, 873, 954
GluI	GCNGC	3 cut(s)	222, 788, 821
GsuI	CTGGAG	1 cut(s)	542
HaeIII	GGCC	3 cut(s)	197, 314, 570
HgaI	GACGC	1 cut(s)	35
Hin1II	CATG	6 cut(s)	68, 156, 282, 469, 738, 804
HincII	GTYRAC	3 cut(s)	121, 349, 941
HindII	GTYRAC	3 cut(s)	121, 349, 941
HinfI	GANTC	3 cut(s)	212, 241, 272
HphI	GGTGA	4 cut(s)	8, 34, 769, 899
Hpy166II	GTNNAC	5 cut(s)	42, 121, 349, 797, 941
Hpy188I	TCNGA	3 cut(s)	163, 483, 711
Hpy188III	TCNNGA	6 cut(s)	23, 269, 285, 503, 880, 964
Hpy8I	GTNNAC	5 cut(s)	42, 121, 349, 797, 941
Hpy99I	CGWCG	1 cut(s)	353
HpyAV	CCTTC	2 cut(s)	721, 748
HpyCH4III	ACNGT	4 cut(s)	645, 835, 866, 951
HpyCH4IV	ACGT	1 cut(s)	565
HpyCH4V	TGCA	6 cut(s)	75, 152, 233, 424, 549, 639
HpyF10VI	GCNNNNNNNGC	1 cut(s)	230
HpyF3I	CTNAG	3 cut(s)	237, 261, 407
HpySE526I	ACGT	1 cut(s)	565
Hsp92II	CATG	6 cut(s)	68, 156, 282, 469, 738, 804
Kzo9I	GATC	1 cut(s)	135
LguI	GCTCTTC	1 cut(s)	162
LmnI	GCTCC	2 cut(s)	523, 649
Lsp1109I	GCAGC	3 cut(s)	208, 799, 832
LweI	GCATC	1 cut(s)	62
MaeI	CTAG	3 cut(s)	96, 873, 954
MaeII	ACGT	1 cut(s)	565
MaeIII	GTNAC	2 cut(s)	14, 741
MalI	GATC	1 cut(s)	137
MbiI	CCGCTC	1 cut(s)	885
MboI	GATC	1 cut(s)	135
MboII	GAAGA	6 cut(s)	179, 622, 761, 853, 904, 952
MfeI	CAATTG	1 cut(s)	695
MflI	RGATCY	1 cut(s)	135
MluCI	AATT	6 cut(s)	330, 390, 450, 494, 544, 695
MlyI	GAGTC	1 cut(s)	250
MmeI	TCCRAC	1 cut(s)	627
MnlI	CCTC	7 cut(s)	30, 157, 208, 484, 499, 802, 916
MroXI	GAANNNNTTC	1 cut(s)	498
MseI	TTAA	1 cut(s)	573
MslI	CAYNNNNRTG	1 cut(s)	151
MspR9I	CCNGG	1 cut(s)	521
MunI	CAATTG	1 cut(s)	695
MvaI	CCWGG	1 cut(s)	521
MwoI	GCNNNNNNNGC	1 cut(s)	230
NcoI	CCATGG	1 cut(s)	800
NdeII	GATC	1 cut(s)	135
NlaIII	CATG	6 cut(s)	68, 156, 282, 469, 738, 804
NmuCI	GTSAC	1 cut(s)	14
NspI	RCATGY	1 cut(s)	156
PciSI	GCTCTTC	1 cut(s)	162
PdmI	GAANNNNTTC	1 cut(s)	498
PfeI	GAWTC	2 cut(s)	212, 272
PflMI	CCANNNNNTGG	1 cut(s)	284
PkrI	GCNGC	3 cut(s)	223, 789, 822
PleI	GAGTC	1 cut(s)	249
PpsI	GAGTC	1 cut(s)	249
Psp6I	CCWGG	1 cut(s)	519
PspGI	CCWGG	1 cut(s)	519
PspPI	GGNCC	1 cut(s)	313
PsuI	RGATCY	1 cut(s)	135
RsaI	GTAC	4 cut(s)	300, 405, 798, 915
RsaNI	GTAC	4 cut(s)	299, 404, 797, 914
RseI	CAYNNNNRTG	1 cut(s)	151
SalI	GTCGAC	1 cut(s)	347
SapI	GCTCTTC	1 cut(s)	162
SaqAI	TTAA	1 cut(s)	573
SatI	GCNGC	3 cut(s)	222, 788, 821
Sau3AI	GATC	1 cut(s)	135
Sau96I	GGNCC	1 cut(s)	313
SchI	GAGTC	1 cut(s)	250
ScrFI	CCNGG	1 cut(s)	521
SetI	ASST	9 cut(s)	47, 174, 322, 418, 522, 568, 580, 748, 759
SfaNI	GCATC	1 cut(s)	62
SmiMI	CAYNNNNRTG	1 cut(s)	151
SmlI	CTYRAG	4 cut(s)	21, 108, 139, 880
SmoI	CTYRAG	4 cut(s)	21, 108, 139, 880
Sse9I	AATT	6 cut(s)	330, 390, 450, 494, 544, 695
SsiI	CCGC	1 cut(s)	885
SspI	AATATT	1 cut(s)	687
SspMI	CTAG	3 cut(s)	96, 873, 954
StyD4I	CCNGG	1 cut(s)	519
StyI	CCWWGG	2 cut(s)	316, 800
TaaI	ACNGT	4 cut(s)	645, 835, 866, 951
TaiI	ACGT	1 cut(s)	568
TaqI	TCGA	4 cut(s)	249, 348, 627, 946
TasI	AATT	6 cut(s)	330, 390, 450, 494, 544, 695
TatI	WGTACW	1 cut(s)	403
TfiI	GAWTC	2 cut(s)	212, 272
Tru1I	TTAA	1 cut(s)	573
Tru9I	TTAA	1 cut(s)	573
TscAI	CASTG	2 cut(s)	12, 797
TseFI	GTSAC	1 cut(s)	14
TseI	GCWGC	3 cut(s)	221, 787, 820
Tsp45I	GTSAC	1 cut(s)	14
TspDTI	ATGAA	2 cut(s)	135, 402
TspGWI	ACGGA	1 cut(s)	554
TspRI	CASTG	2 cut(s)	12, 797
Van91I	CCANNNNNTGG	1 cut(s)	284
XagI	CCTNNNNNAGG	1 cut(s)	524
XapI	RAATTY	2 cut(s)	330, 494
XceI	RCATGY	1 cut(s)	156
XmiI	GTMKAC	1 cut(s)	348
XmnI	GAANNNNTTC	1 cut(s)	498
XspI	CTAG	3 cut(s)	96, 873, 954

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.