Rh2AG113200

Belongs to the tRNA nucleotidyltransferase poly(A) polymerase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Forward (+)
10121917 .. 10127759
5843 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG113200.1

Sequence Viewer

Length: 1623 bp
ATGGTGCATATTAAAGGTTCTGTCATAGAGGTATCCAGTTTTGAAACGGTGGCAAAAGCAAAACACTCTGATAAACAAGTTACTTTCTCTCAAATGCCAAAGGGCTGTGATAAGAAAGATTTCATCCGCTGGAGAAACAGCATGCATCGAGACTTCACAATTAACAGTTTGTTCTTTGATCCTTTATCAAATAAAATCTTTGATTATGCAAATGGAATGGCGGATTTGAGATCCTCAAAGCTACGGTCGTTAGGCTCCGCCAAGTTGTCGTTTAAAGAGGATTGCGCAAGAATTTTACGTGGCTTAAGAATTGCTGCTCGTCTGACTTTGAAAATTTCAAAAGAAACCGAGACAGCTATACATAAGTTTTCTTCATCCATTTCGACATTGGCAACGAGTAGAATTATGATGGAAATGAACTATATGCTTTCTTATGGAGCTGCTGAGCCATCTCTTTGTCTGCTTCGGGAATTCAATCTACTCAGAGTTCTACTTCCAATTCATGCAGCATACTTGGATGAACAGAGGATTAGGAAGTTTCCTCAGAATTCCACGATGTTGATGAAACTATTCTTTAATTTGGATAAAGTTGTCACGGTTGATCGACCTTCTGACTGCAGTTTATGGGTAGCTCTGTTGGCTTTTCACATGGCACTGGTCAGTCACCCTCAAGACGCTCTTGTGGTGTTCACCTTTGCTTCTGTCCTGTATCATGGGGGATGCAAAAAGGGTCTTACATTTGCTAGAGACAATGCTCAAGTGATAGTTGACTATCTACCAGAGATCTCAAGTTCATCTGCATGTAAATCAGAGGAAGAGCTTGAAAAAGAAGTTTCCTTATTGGCCTCTCTTGTTTTAGATTCTATTGCTGCTCTAACTGCAACTGAGAGTCTTGTCGAAACGATGTCTAAGTATCCTGAATCTCCATGCTCTGGATTGGTATTTGTACCGAAGAAAACGGCCCAAGGTGTTGCTGAAATTTTTAGAGTTCTGGCCGACGACATCAAATCTTACAGTAGAGAAAGAAAAAGTTATGAAATTGATTACCCTGTACTTCGGAAAGGTTTTCTGCACGAGACAAGATTTGTGCTTGGCAAAATTATTTTAGAAACCATGAGCAGTAGTATTTTGAAAGGGGAGGAATTTGTTCAGGAGGACTACCGACACCTGGAGCAGGAGAGCATTAAGGAAAATTGCAATAAGGGTAAAAAACGTGGCCTTAAACCTGATACTCCTAAACTAAAACAAGAGTTTGTGAAGAAACATAAGTTGGTCGAAAGGAAATGCAGACCGTTGGAGCAAGAGATGGACATTGATAACCAAGATTCTGTAATATTATCACAATTGGATTCAGTTCCGAGACATAATGTAGAGAAGGAAACATGCCAGTTACCTGAAGAGAAGGTGATAAAGAAAAAACATAAGGCAACGAAGCAGCAGTGTGTACCATGGGATGAGGCAACGGAGCAGCAACTAAAGACAGTTGAGAAGAATAATGACAAGGAGAATGACAGTCCATCTAGTCTCTTGAGCGGTGAGAAGATACAGAAACGCAAAGAAGTACCAGACAAGGGGGAGAAAAGCAGTCAATTTCGACTGTCTAGTCTCTTCAAGAAAAAATAA

Protein Analysis

540

Amino Acids

61.48

Weight (kDa)

9.01

Isoelectric Point (pI)

49.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PolyA_pol PF01743 26 - 82 2.2e-08 Poly A polymerase head domain
PolyA_pol_RNAbd PF12627 110 - 171 7.8e-15 Probable RNA and SrmB- binding site of polymerase A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1602
Acc16I TGCGCA 1 cut(s) 286
AccB7I CCANNNNNTGG 1 cut(s) 932
AccBSI CCGCTC 1 cut(s) 1533
AciI CCGC 4 cut(s) 127, 221, 258, 1533
AclWI GGATC 2 cut(s) 173, 225
AcoI YGGCCR 1 cut(s) 993
AcsI RAATTY 6 cut(s) 291, 333, 470, 547, 978, 1142
AcuI CTGAAG 1 cut(s) 1416
AfaI GTAC 4 cut(s) 948, 1053, 1446, 1563
AfiI CCNNNNNNNGG 4 cut(s) 932, 1168, 1174, 1571
AflII CTTAAG 1 cut(s) 304
AgsI TTSAA 7 cut(s) 44, 331, 339, 475, 824, 1132, 1612
AjnI CCWGG 1 cut(s) 1167
AjuI GAANNNNNNNTTGG 2 cut(s) 1253, 1285
AluBI AGCT 5 cut(s) 241, 356, 440, 632, 820
AluI AGCT 5 cut(s) 241, 356, 440, 632, 820
Alw26I GTCTC 7 cut(s) 144, 344, 741, 1070, 1354, 1529, 1610
AlwI GGATC 2 cut(s) 173, 225
AoxI GGCC 4 cut(s) 843, 960, 993, 1216
ApeKI GCWGC 6 cut(s) 314, 440, 506, 869, 1435, 1468
ApoI RAATTY 6 cut(s) 291, 333, 470, 547, 978, 1142
ArsI GACNNNNNNTTYG 2 cut(s) 230, 262
Asp700I GAANNNNTTC 3 cut(s) 119, 569, 1146
AspLEI GCGC 1 cut(s) 287
AspS9I GGNCC 1 cut(s) 961
AsuHPI GGTGA 4 cut(s) 656, 682, 1417, 1547
BauI CACGAG 1 cut(s) 1073
BbvI GCAGC 6 cut(s) 301, 427, 518, 856, 1447, 1480
BccI CCATC 4 cut(s) 403, 457, 1300, 1525
BceAI ACGGC 1 cut(s) 975
BciT130I CCWGG 1 cut(s) 1169
BciVI GTATCC 2 cut(s) 43, 924
BcoDI GTCTC 7 cut(s) 144, 344, 741, 1070, 1354, 1529, 1610
BfaI CTAG 3 cut(s) 744, 1521, 1602
BfmI CTRYAG 1 cut(s) 616
BfrI CTTAAG 1 cut(s) 304
BfuI GTATCC 2 cut(s) 43, 924
BglII AGATCT 1 cut(s) 783
BisI GCNGC 6 cut(s) 315, 441, 507, 870, 1436, 1469
BlpI GCTNAGC 1 cut(s) 444
BlsI GCNGC 6 cut(s) 316, 442, 508, 871, 1437, 1470
Bme1390I CCNGG 1 cut(s) 1169
BmgT120I GGNCC 1 cut(s) 961
BmiI GGNNCC 1 cut(s) 256
BmrFI CCNGG 1 cut(s) 1169
BmsI GCATC 2 cut(s) 154, 710
BpmI CTGGAG 2 cut(s) 151, 1190
Bpu1102I GCTNAGC 1 cut(s) 444
BpuEI CTTGAG 4 cut(s) 654, 741, 772, 1549
BsaAI YACGTR 1 cut(s) 299
BsaJI CCNNGG 2 cut(s) 964, 1448
Bsc4I CCNNNNNNNGG 4 cut(s) 932, 1168, 1174, 1571
Bse1I ACTGG 3 cut(s) 36, 660, 1387
BseBI CCWGG 1 cut(s) 1169
BseDI CCNNGG 2 cut(s) 964, 1448
BseGI GGATG 5 cut(s) 123, 374, 523, 725, 1459
BseLI CCNNNNNNNGG 4 cut(s) 932, 1168, 1174, 1571
BseMII CTCAG 4 cut(s) 435, 496, 557, 876
BseNI ACTGG 3 cut(s) 36, 660, 1387
BseXI GCAGC 6 cut(s) 301, 427, 518, 856, 1447, 1480
BsgI GTGCAG 1 cut(s) 1055
Bsh1285I CGRYCG 1 cut(s) 248
BshFI GGCC 4 cut(s) 845, 962, 995, 1218
BsiEI CGRYCG 1 cut(s) 248
BslI CCNNNNNNNGG 4 cut(s) 932, 1168, 1174, 1571
BsmAI GTCTC 7 cut(s) 144, 344, 741, 1070, 1354, 1529, 1610
BsnI GGCC 4 cut(s) 845, 962, 995, 1218
Bsp143I GATC 4 cut(s) 178, 230, 601, 783
Bsp1720I GCTNAGC 1 cut(s) 444
Bsp19I CCATGG 1 cut(s) 1448
BspACI CCGC 4 cut(s) 127, 221, 258, 1533
BspANI GGCC 4 cut(s) 845, 962, 995, 1218
BspCNI CTCAG 4 cut(s) 436, 495, 556, 877
BspLI GGNNCC 1 cut(s) 256
BspMAI CTGCAG 1 cut(s) 620
BspPI GGATC 2 cut(s) 173, 225
BspQI GCTCTTC 1 cut(s) 810
BspTI CTTAAG 1 cut(s) 304
BsrBI CCGCTC 1 cut(s) 1533
BsrI ACTGG 3 cut(s) 36, 660, 1387
BssECI CCNNGG 2 cut(s) 964, 1448
BssMI GATC 4 cut(s) 178, 230, 601, 783
BssSI CACGAG 1 cut(s) 1073
BssT1I CCWWGG 2 cut(s) 964, 1448
Bst2BI CACGAG 1 cut(s) 1073
Bst2UI CCWGG 1 cut(s) 1169
Bst4CI ACNGT 9 cut(s) 49, 167, 246, 598, 1016, 1293, 1483, 1514, 1599
Bst6I CTCTTC 3 cut(s) 810, 1392, 1613
BstAFI CTTAAG 1 cut(s) 304
BstBAI YACGTR 1 cut(s) 299
BstC8I GCNNGC 1 cut(s) 143
BstDEI CTNAG 5 cut(s) 444, 482, 543, 885, 909
BstDSI CCRYGG 1 cut(s) 1448
BstENI CCTNNNNNAGG 1 cut(s) 1172
BstF5I GGATG 5 cut(s) 123, 374, 523, 725, 1459
BstHHI GCGC 1 cut(s) 287
BstKTI GATC 4 cut(s) 181, 233, 604, 786
BstMAI GTCTC 7 cut(s) 144, 344, 741, 1070, 1354, 1529, 1610
BstMBI GATC 4 cut(s) 178, 230, 601, 783
BstMCI CGRYCG 1 cut(s) 248
BstMWI GCNNNNNNNGC 2 cut(s) 638, 878
BstNI CCWGG 1 cut(s) 1169
BstNSI RCATGY 3 cut(s) 145, 804, 1386
BstSCI CCNGG 1 cut(s) 1167
BstSFI CTRYAG 1 cut(s) 616
BstV1I GCAGC 6 cut(s) 301, 427, 518, 856, 1447, 1480
BstX2I RGATCY 2 cut(s) 230, 783
BstYI RGATCY 2 cut(s) 230, 783
BsuI GTATCC 2 cut(s) 43, 924
BsuRI GGCC 4 cut(s) 845, 962, 995, 1218
BtgI CCRYGG 1 cut(s) 1448
BtsCI GGATG 5 cut(s) 123, 374, 523, 725, 1459
BtsI GCAGTG 1 cut(s) 1445
BtsIMutI CAGTG 2 cut(s) 653, 1445
Cac8I GCNNGC 1 cut(s) 143
CfoI GCGC 1 cut(s) 287
Cfr13I GGNCC 1 cut(s) 961
CseI GACGC 1 cut(s) 683
Csp6I GTAC 4 cut(s) 947, 1052, 1445, 1562
CviAII CATG 9 cut(s) 142, 503, 649, 713, 801, 927, 1114, 1383, 1449
CviQI GTAC 4 cut(s) 947, 1052, 1445, 1562
DdeI CTNAG 5 cut(s) 444, 482, 543, 885, 909
DpnI GATC 4 cut(s) 180, 232, 603, 785
DpnII GATC 4 cut(s) 178, 230, 601, 783
DraI TTTAAA 1 cut(s) 274
DrdI GACNNNNNNGTC 1 cut(s) 1602
DseDI GACNNNNNNGTC 1 cut(s) 1602
EaeI YGGCCR 1 cut(s) 993
Eam1104I CTCTTC 3 cut(s) 810, 1392, 1613
EarI CTCTTC 3 cut(s) 810, 1392, 1613
EciI GGCGGA 2 cut(s) 236, 247
Eco130I CCWWGG 2 cut(s) 964, 1448
Eco57I CTGAAG 1 cut(s) 1416
EcoNI CCTNNNNNAGG 1 cut(s) 1172
EcoRI GAATTC 2 cut(s) 470, 547
EcoRII CCWGG 1 cut(s) 1167
EcoT14I CCWWGG 2 cut(s) 964, 1448
EcoT22I ATGCAT 1 cut(s) 147
ErhI CCWWGG 2 cut(s) 964, 1448
FaeI CATG 9 cut(s) 145, 506, 652, 716, 804, 930, 1117, 1386, 1452
FalI AAGNNNNNCTT 2 cut(s) 663, 695
FatI CATG 9 cut(s) 141, 502, 648, 712, 800, 926, 1113, 1382, 1448
Fnu4HI GCNGC 6 cut(s) 315, 441, 507, 870, 1436, 1469
FokI GGATG 5 cut(s) 110, 361, 530, 732, 1466
Fsp4HI GCNGC 6 cut(s) 315, 441, 507, 870, 1436, 1469
FspBI CTAG 3 cut(s) 744, 1521, 1602
FspI TGCGCA 1 cut(s) 286
GlaI GCGC 1 cut(s) 286
GluI GCNGC 6 cut(s) 315, 441, 507, 870, 1436, 1469
GsuI CTGGAG 2 cut(s) 151, 1190
HaeIII GGCC 4 cut(s) 845, 962, 995, 1218
HgaI GACGC 1 cut(s) 683
HhaI GCGC 1 cut(s) 287
Hin1II CATG 9 cut(s) 145, 506, 652, 716, 804, 930, 1117, 1386, 1452
Hin6I GCGC 1 cut(s) 285
HinP1I GCGC 1 cut(s) 285
HincII GTYRAC 1 cut(s) 769
HindII GTYRAC 1 cut(s) 769
HinfI GANTC 5 cut(s) 860, 889, 920, 1325, 1349
HphI GGTGA 4 cut(s) 656, 682, 1417, 1547
Hpy166II GTNNAC 3 cut(s) 690, 769, 1445
Hpy188I TCNGA 8 cut(s) 70, 324, 485, 546, 613, 811, 1059, 1359
Hpy188III TCNNGA 8 cut(s) 149, 467, 671, 917, 933, 1151, 1528, 1612
Hpy8I GTNNAC 3 cut(s) 690, 769, 1445
Hpy99I CGWCG 1 cut(s) 1001
HpyAV CCTTC 3 cut(s) 618, 1369, 1396
HpyCH4III ACNGT 9 cut(s) 49, 167, 246, 598, 1016, 1293, 1483, 1514, 1599
HpyCH4IV ACGT 2 cut(s) 298, 1213
HpyF10VI GCNNNNNNNGC 2 cut(s) 638, 878
HpyF3I CTNAG 5 cut(s) 444, 482, 543, 885, 909
HpySE526I ACGT 2 cut(s) 298, 1213
Hsp92II CATG 9 cut(s) 145, 506, 652, 716, 804, 930, 1117, 1386, 1452
HspAI GCGC 1 cut(s) 285
Kzo9I GATC 4 cut(s) 178, 230, 601, 783
LguI GCTCTTC 1 cut(s) 810
LmnI GCTCC 5 cut(s) 260, 437, 1171, 1297, 1465
Lsp1109I GCAGC 6 cut(s) 301, 427, 518, 856, 1447, 1480
LweI GCATC 2 cut(s) 154, 710
MaeI CTAG 3 cut(s) 744, 1521, 1602
MaeII ACGT 2 cut(s) 298, 1213
MaeIII GTNAC 4 cut(s) 79, 592, 662, 1389
MalI GATC 4 cut(s) 180, 232, 603, 785
MbiI CCGCTC 1 cut(s) 1533
MboI GATC 4 cut(s) 178, 230, 601, 783
MboII GAAGA 8 cut(s) 363, 827, 964, 1270, 1409, 1501, 1552, 1600
MfeI CAATTG 1 cut(s) 1343
MflI RGATCY 2 cut(s) 230, 783
MlyI GAGTC 1 cut(s) 898
MmeI TCCRAC 1 cut(s) 1275
Mph1103I ATGCAT 1 cut(s) 147
MroXI GAANNNNTTC 3 cut(s) 119, 569, 1146
MseI TTAA 7 cut(s) 12, 162, 273, 305, 576, 1185, 1221
MslI CAYNNNNRTG 1 cut(s) 799
MspA1I CMGCKG 1 cut(s) 129
MspCI CTTAAG 1 cut(s) 304
MspR9I CCNGG 1 cut(s) 1169
MunI CAATTG 1 cut(s) 1343
MvaI CCWGG 1 cut(s) 1169
MwoI GCNNNNNNNGC 2 cut(s) 638, 878
NcoI CCATGG 1 cut(s) 1448
NdeII GATC 4 cut(s) 178, 230, 601, 783
NlaIII CATG 9 cut(s) 145, 506, 652, 716, 804, 930, 1117, 1386, 1452
NlaIV GGNNCC 1 cut(s) 256
NmuCI GTSAC 2 cut(s) 592, 662
NsbI TGCGCA 1 cut(s) 286
NsiI ATGCAT 1 cut(s) 147
NspI RCATGY 3 cut(s) 145, 804, 1386
PaeI GCATGC 1 cut(s) 145
PciSI GCTCTTC 1 cut(s) 810
PdmI GAANNNNTTC 3 cut(s) 119, 569, 1146
PfeI GAWTC 4 cut(s) 860, 920, 1325, 1349
PflMI CCANNNNNTGG 1 cut(s) 932
PkrI GCNGC 6 cut(s) 316, 442, 508, 871, 1437, 1470
PleI GAGTC 1 cut(s) 897
PpsI GAGTC 1 cut(s) 897
Ppu21I YACGTR 1 cut(s) 299
Psp6I CCWGG 1 cut(s) 1167
PspGI CCWGG 1 cut(s) 1167
PspN4I GGNNCC 1 cut(s) 256
PspPI GGNCC 1 cut(s) 961
PstI CTGCAG 1 cut(s) 620
PsuI RGATCY 2 cut(s) 230, 783
RsaI GTAC 4 cut(s) 948, 1053, 1446, 1563
RsaNI GTAC 4 cut(s) 947, 1052, 1445, 1562
RseI CAYNNNNRTG 1 cut(s) 799
SapI GCTCTTC 1 cut(s) 810
SaqAI TTAA 7 cut(s) 12, 162, 273, 305, 576, 1185, 1221
SatI GCNGC 6 cut(s) 315, 441, 507, 870, 1436, 1469
Sau3AI GATC 4 cut(s) 178, 230, 601, 783
Sau96I GGNCC 1 cut(s) 961
SchI GAGTC 1 cut(s) 898
ScrFI CCNGG 1 cut(s) 1169
SfaNI GCATC 2 cut(s) 154, 710
SfcI CTRYAG 1 cut(s) 616
SmiMI CAYNNNNRTG 1 cut(s) 799
SmlI CTYRAG 5 cut(s) 304, 669, 756, 787, 1528
SmoI CTYRAG 5 cut(s) 304, 669, 756, 787, 1528
SphI GCATGC 1 cut(s) 145
SsiI CCGC 4 cut(s) 127, 221, 258, 1533
SspI AATATT 1 cut(s) 1335
SspMI CTAG 3 cut(s) 744, 1521, 1602
StyD4I CCNGG 1 cut(s) 1167
StyI CCWWGG 2 cut(s) 964, 1448
TaaI ACNGT 9 cut(s) 49, 167, 246, 598, 1016, 1293, 1483, 1514, 1599
TaiI ACGT 2 cut(s) 301, 1216
TaqI TCGA 6 cut(s) 148, 383, 604, 897, 1275, 1594
TatI WGTACW 1 cut(s) 1051
TfiI GAWTC 4 cut(s) 860, 920, 1325, 1349
Tru1I TTAA 7 cut(s) 12, 162, 273, 305, 576, 1185, 1221
Tru9I TTAA 7 cut(s) 12, 162, 273, 305, 576, 1185, 1221
TscAI CASTG 2 cut(s) 660, 1445
TseFI GTSAC 2 cut(s) 592, 662
TseI GCWGC 6 cut(s) 314, 440, 506, 869, 1435, 1468
Tsp45I GTSAC 2 cut(s) 592, 662
TspDTI ATGAA 8 cut(s) 112, 363, 431, 491, 534, 578, 783, 1050
TspGWI ACGGA 1 cut(s) 1478
TspRI CASTG 2 cut(s) 660, 1445
Van91I CCANNNNNTGG 1 cut(s) 932
Vha464I CTTAAG 1 cut(s) 304
XagI CCTNNNNNAGG 1 cut(s) 1172
XapI RAATTY 6 cut(s) 291, 333, 470, 547, 978, 1142
XceI RCATGY 3 cut(s) 145, 804, 1386
XcmI CCANNNNNNNNNTGG 1 cut(s) 385
XmnI GAANNNNTTC 3 cut(s) 119, 569, 1146
XspI CTAG 3 cut(s) 744, 1521, 1602
Zsp2I ATGCAT 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.