Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002344

Physical Location & Seq

Genomic Coordinates Reverse (-)

82620392 .. 82626111

Gene Structure 5720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00144710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2046 bp

ATGTATGATATTTATACTCAGATGGCGATAACTTCCCTCAGAGGCAACAATCACTTGTTATCTCGCCTCAAACTCCTTCTTAACCAGCAACAGAGACTCGCCCACACGTTCTCCGAAGGTCCTCAGTCTCGCCCTAAAAAAATGGTTCCTGAGTCGGTCCCTGAAGAGGGGTTGATTGACATGTCGAAATGGAGAAAGGTGGATTCGAGGTTGTTTGGGATAACACGGTCCATGATTCCCGAGTCATCCTGGAACGTCTTGAGAATACTTCGAAGGGAAGGGTTTGAAGCCTACTTAGTGGGCGGATGTGTGAGGGACTTGATCCTGAAAAGAATTCCTAAAGACTTTGATGTGATCACTACAGCTAATCTTAAACAGATCAAGAGGCAGTTCCATCGTGCACAAATTGTCGGACAACGATTTCCTATATGTATGGTGCATATTAAAGGTTCTGTCATAGAGGTATCCAGTTTTGAAACGGTGGCAAAAGTAAAACACTCCGATAAAGAAGTTACTTTCTCTCAAATGCCAAAGGGCTGTGATAAGAAAGATTTCATCCGCTGGAGAAACAGCATGCATCGAGACTTCACAATTAACAGTTTGTTCTTTGATCCTTTATCAAATGAAATCTTTGATTATGCAAATGGAATGGCGGATTTGAAATCCTCAAAGCTACGGTCGTTAGGCTCCGCCAAGTTGTCATTTAAAGAGGATTGCGCAAGAATTTTACGTGGCTTAAGAATTGCTGCTCGTCTGAGTTTGAAAATTTCAAAAGAAACCGAGACAGCTATACATAAGTTTTCTTCATCCATTTCGACATTGGCAACGAGTAGAATTATGATGGAAATGAACTATATGCTTTCTTATGGAGCTGCTGAGCCATCTCTCTGTCTGCTTTGGAAATTCAATCTACTCAGAGTTCTACTTCCAATTCATGCAGCATACTTGGATGAACAGCATATTAGGAAGTTTCCTCAGAATTCCACGATGTTGATGAAACTATTCTTTAATTTGGATAAAGTTGTCACGGTTGATCGACCTTCTGACTGCAGTTTATGGGTAGCTCTCTTGGCTTTTCACATGGCACTGATCAGTCACCCTCATGACGCTCTTGTGGTGTTCACCTTTGCTTCTATCCTGTATCATGGGGGATGCAAAAAGGGTCTTAAATTTGCTAGAGACAATGCTCAAGTGATAGTTGACTATCTACCTGAGATCTTAAGTTCACCTGCATGTAAATCAGAGGAAGAGCTTGAAAAAGAAGTTTCCCTATTGGCCTCTCTTGTTTTAGATTCTATTGCTGCTCTAACTGCAACTGAGAGTCTTGTCGAAACGATGTCTAAGTATCCTGAATCTCCATGCTCTGGATTGGTATTTGTACCAAAGAAAACGGCCCAAGGTGTTGCTGAAATTTTTAGAGTTCTGGCGGACAACATCAAATCTTACAATAGAGAAAGAAAAAGTTATGAAATTGATTACCCTGTACTTCGGAAAGGTTTTCTGCACGAGACAAGATTTGTGCTTGGCAAAATTATTTTAGAAACCATGAGCAGTTGTATTTTGAAAGGGGAGGAATTTGTTCAGGAGGACTACCGACACCTGGAGCAGGAGAGCATTAAGGAAAATTGCAATAAGGGTAAAAAACGTGGCCTTAAACCTGATTCTCCTGAACTAAAACAAGAGTTTGCGAAGAAACATAAGTTGGTCGAAAAGAAATGCAGACCGTTGGAGCAAGAGATGGATATTGATAACCAAGATGCTGTAACATTATCACAATTGGTTTCAGTTCTGGAACATAATGTAGAGAAGGAAACATGCCAGTTACCTGAAGAGAAGGTGATAAAGAAAAAACATAAGGCAACGAAGCAGCAGTGTGTACCACGGGATGAGGCAACGAAGCAGCAACTAAAGACAGTTGAGAAGAGTAGTGACAAGGAGAATGACAGTCTATCTAGTCTCTTGAGCGGTGAGAAGATACAGAAACGAAAAGTACCAGACAAGGGGGAGAAAAGCAGTCAACTTCGACTGTCTAGTCTCTTCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004652 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006276 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016740 GO:0016772 GO:0016779 GO:0031123 GO:0031124 GO:0034641 GO:0043170 GO:0043412 GO:0043631 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0070566 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PolyA_pol PolyA_pol_RNAbd

Protein Analysis

681

Amino Acids

77.77

Weight (kDa)

9.24

Isoelectric Point (pI)

51.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PolyA_pol	PF01743	97 - 226	4.8e-25	Poly A polymerase head domain
PolyA_pol_RNAbd	PF12627	254 - 315	7.8e-15	Probable RNA and SrmB- binding site of polymerase A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17580
fragaria_vesca	FvH4_1g10510 FvH4_1g10510 FvH4_1g10510 FvH4_1g10510 FvH4_1g29700
malus_domestica	MD02G1119000.v1.1 MD15G1233000.v1.1
prunus_persica	Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1 Prupe.7G180900_v2.0.a1
pyrus_communis	pycom02g09260 pycom02g09270 pycom15g20750
rosa_chinensis	RchiOBHm_Chr2g0097411 RchiOBHm_Chr2g0097511 RchiOBHm_Chr3g0465401
rosa_laevigata	RLG00000016724
rosa_multiflora	Rmu_sc0001060.1_g000002 Rmu_sc0004220.1_g000008 Rmu_sc0011781.1_g000006
rosa_roxburghii	Rroxscaffold_2G00144710
rosa_rugosa	Rorug02G0066800 Rorug02G0066800 Rorug02G0066800
rosa_samantha	Rh2AG113200 Rh2BG116200 Rh2BG116300 Rh2CG118200 Rh2CG118300 Rh2DG117300 Rh3BG141600 Rh3CG142700 Rh3DG142700
rosa_wichuraiana	Rw2G008870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1237
AasI	GACNNNNNNGTC	1 cut(s)	2031
Acc16I	TGCGCA	1 cut(s)	718
Acc36I	ACCTGC	1 cut(s)	1237
AccB7I	CCANNNNNTGG	1 cut(s)	1364
AccBSI	CCGCTC	1 cut(s)	1965
AciI	CCGC	6 cut(s)	303, 559, 653, 690, 1427, 1965
AclWI	GGATC	2 cut(s)	316, 605
AcsI	RAATTY	8 cut(s)	333, 723, 765, 902, 979, 1169, 1410, 1574
AcuI	CTGAAG	2 cut(s)	183, 1848
AfaI	GTAC	4 cut(s)	1380, 1485, 1878, 1992
AfiI	CCNNNNNNNGG	6 cut(s)	166, 167, 1364, 1600, 1606, 2000
AflII	CTTAAG	2 cut(s)	736, 1219
AflIII	ACRYGT	2 cut(s)	105, 180
AgsI	TTSAA	9 cut(s)	287, 476, 661, 763, 771, 907, 1256, 1564, 2041
AjnI	CCWGG	2 cut(s)	248, 1599
AjuI	GAANNNNNNNTTGG	2 cut(s)	1685, 1717
AluBI	AGCT	6 cut(s)	365, 673, 788, 872, 1064, 1252
AluI	AGCT	6 cut(s)	365, 673, 788, 872, 1064, 1252
Alw21I	GWGCWC	1 cut(s)	403
Alw26I	GTCTC	8 cut(s)	88, 132, 576, 776, 1173, 1502, 1961, 2039
Alw44I	GTGCAC	1 cut(s)	399
AlwI	GGATC	2 cut(s)	316, 605
Ama87I	CYCGRG	1 cut(s)	239
AoxI	GGCC	3 cut(s)	1275, 1392, 1648
ApaLI	GTGCAC	1 cut(s)	399
ApeKI	GCWGC	6 cut(s)	746, 872, 938, 1301, 1867, 1900
ApoI	RAATTY	8 cut(s)	333, 723, 765, 902, 979, 1169, 1410, 1574
ArsI	GACNNNNNNTTYG	2 cut(s)	662, 694
Asp700I	GAANNNNTTC	3 cut(s)	551, 1001, 1578
AspLEI	GCGC	1 cut(s)	719
AspS9I	GGNCC	4 cut(s)	119, 157, 228, 1393
AsuHPI	GGTGA	5 cut(s)	1088, 1114, 1218, 1849, 1979
AsuII	TTCGAA	1 cut(s)	271
AvaI	CYCGRG	1 cut(s)	239
AvaII	GGWCC	3 cut(s)	119, 157, 228
BaeGI	GKGCMC	1 cut(s)	403
BauI	CACGAG	1 cut(s)	1505
Bbv12I	GWGCWC	1 cut(s)	403
BbvI	GCAGC	6 cut(s)	733, 859, 950, 1288, 1879, 1912
BccI	CCATC	5 cut(s)	16, 402, 835, 889, 1732
BceAI	ACGGC	1 cut(s)	1407
BcgI	CGANNNNNNTGC	2 cut(s)	377, 411
BciT130I	CCWGG	2 cut(s)	250, 1601
BciVI	GTATCC	2 cut(s)	475, 1356
BclI	TGATCA	2 cut(s)	354, 1089
BcoDI	GTCTC	8 cut(s)	88, 132, 576, 776, 1173, 1502, 1961, 2039
BfaI	CTAG	3 cut(s)	1176, 1953, 2031
BfmI	CTRYAG	2 cut(s)	360, 1048
BfrI	CTTAAG	2 cut(s)	736, 1219
BfuAI	ACCTGC	1 cut(s)	1237
BfuI	GTATCC	2 cut(s)	475, 1356
BglII	AGATCT	1 cut(s)	1215
BisI	GCNGC	6 cut(s)	747, 873, 939, 1302, 1868, 1901
BlpI	GCTNAGC	1 cut(s)	876
BlsI	GCNGC	6 cut(s)	748, 874, 940, 1303, 1869, 1902
Bme1390I	CCNGG	2 cut(s)	250, 1601
Bme18I	GGWCC	3 cut(s)	119, 157, 228
BmeT110I	CYCGRG	1 cut(s)	239
BmgT120I	GGNCC	4 cut(s)	119, 157, 228, 1393
BmiI	GGNNCC	3 cut(s)	147, 159, 688
BmrFI	CCNGG	2 cut(s)	250, 1601
BmsI	GCATC	3 cut(s)	586, 1142, 1747
BpmI	CTGGAG	2 cut(s)	583, 1622
Bpu1102I	GCTNAGC	1 cut(s)	876
Bpu14I	TTCGAA	1 cut(s)	271
BpuEI	CTTGAG	3 cut(s)	280, 1173, 1981
BsaAI	YACGTR	1 cut(s)	731
BsaJI	CCNNGG	2 cut(s)	1396, 1880
BsaXI	ACNNNNNCTCC	2 cut(s)	95, 125
Bsc4I	CCNNNNNNNGG	6 cut(s)	166, 167, 1364, 1600, 1606, 2000
Bse1I	ACTGG	2 cut(s)	468, 1819
BseBI	CCWGG	2 cut(s)	250, 1601
BseDI	CCNNGG	2 cut(s)	1396, 1880
BseGI	GGATG	7 cut(s)	245, 311, 555, 806, 955, 1157, 1891
BseLI	CCNNNNNNNGG	6 cut(s)	166, 167, 1364, 1600, 1606, 2000
BseNI	ACTGG	2 cut(s)	468, 1819
BseSI	GKGCMC	1 cut(s)	403
BseXI	GCAGC	6 cut(s)	733, 859, 950, 1288, 1879, 1912
BsgI	GTGCAG	1 cut(s)	1487
Bsh1285I	CGRYCG	1 cut(s)	680
BshFI	GGCC	3 cut(s)	1277, 1394, 1650
BsiEI	CGRYCG	1 cut(s)	680
BsiHKAI	GWGCWC	1 cut(s)	403
BsiHKCI	CYCGRG	1 cut(s)	239
BslFI	GGGAC	2 cut(s)	143, 329
BslI	CCNNNNNNNGG	6 cut(s)	166, 167, 1364, 1600, 1606, 2000
BsmAI	GTCTC	8 cut(s)	88, 132, 576, 776, 1173, 1502, 1961, 2039
BsmFI	GGGAC	2 cut(s)	143, 329
BsnI	GGCC	3 cut(s)	1277, 1394, 1650
BsoBI	CYCGRG	1 cut(s)	239
Bsp119I	TTCGAA	1 cut(s)	271
Bsp1286I	GDGCHC	1 cut(s)	403
Bsp143I	GATC	7 cut(s)	321, 354, 378, 610, 1033, 1089, 1215
Bsp1720I	GCTNAGC	1 cut(s)	876
BspACI	CCGC	6 cut(s)	303, 559, 653, 690, 1427, 1965
BspANI	GGCC	3 cut(s)	1277, 1394, 1650
BspHI	TCATGA	1 cut(s)	1102
BspLI	GGNNCC	3 cut(s)	147, 159, 688
BspMAI	CTGCAG	1 cut(s)	1052
BspMI	ACCTGC	1 cut(s)	1237
BspPI	GGATC	2 cut(s)	316, 605
BspQI	GCTCTTC	1 cut(s)	1242
BspT104I	TTCGAA	1 cut(s)	271
BspTI	CTTAAG	2 cut(s)	736, 1219
BsrBI	CCGCTC	1 cut(s)	1965
BsrI	ACTGG	2 cut(s)	468, 1819
BssECI	CCNNGG	2 cut(s)	1396, 1880
BssMI	GATC	7 cut(s)	321, 354, 378, 610, 1033, 1089, 1215
BssSI	CACGAG	1 cut(s)	1505
BssT1I	CCWWGG	1 cut(s)	1396
Bst2BI	CACGAG	1 cut(s)	1505
Bst2UI	CCWGG	2 cut(s)	250, 1601
Bst4CI	ACNGT	9 cut(s)	228, 481, 599, 678, 1030, 1725, 1915, 1946, 2028
Bst6I	CTCTTC	5 cut(s)	159, 1242, 1824, 1916, 2042
BstAFI	CTTAAG	2 cut(s)	736, 1219
BstBAI	YACGTR	1 cut(s)	731
BstBI	TTCGAA	1 cut(s)	271
BstC8I	GCNNGC	1 cut(s)	575
BstDSI	CCRYGG	1 cut(s)	1880
BstENI	CCTNNNNNAGG	1 cut(s)	1604
BstF5I	GGATG	7 cut(s)	245, 311, 555, 806, 955, 1157, 1891
BstHHI	GCGC	1 cut(s)	719
BstKTI	GATC	7 cut(s)	324, 357, 381, 613, 1036, 1092, 1218
BstMAI	GTCTC	8 cut(s)	88, 132, 576, 776, 1173, 1502, 1961, 2039
BstMBI	GATC	7 cut(s)	321, 354, 378, 610, 1033, 1089, 1215
BstMCI	CGRYCG	1 cut(s)	680
BstMWI	GCNNNNNNNGC	2 cut(s)	1070, 1310
BstNI	CCWGG	2 cut(s)	250, 1601
BstNSI	RCATGY	4 cut(s)	184, 577, 1236, 1818
BstSCI	CCNGG	2 cut(s)	248, 1599
BstSFI	CTRYAG	2 cut(s)	360, 1048
BstSLI	GKGCMC	1 cut(s)	403
BstV1I	GCAGC	6 cut(s)	733, 859, 950, 1288, 1879, 1912
BstX2I	RGATCY	1 cut(s)	1215
BstYI	RGATCY	1 cut(s)	1215
BsuI	GTATCC	2 cut(s)	475, 1356
BsuRI	GGCC	3 cut(s)	1277, 1394, 1650
BtgI	CCRYGG	1 cut(s)	1880
BtsCI	GGATG	7 cut(s)	245, 311, 555, 806, 955, 1157, 1891
BtsI	GCAGTG	1 cut(s)	1877
BtsIMutI	CAGTG	2 cut(s)	1085, 1877
BveI	ACCTGC	1 cut(s)	1237
Cac8I	GCNNGC	1 cut(s)	575
CciI	TCATGA	1 cut(s)	1102
CfoI	GCGC	1 cut(s)	719
Cfr13I	GGNCC	4 cut(s)	119, 157, 228, 1393
CseI	GACGC	1 cut(s)	1115
Csp6I	GTAC	4 cut(s)	1379, 1484, 1877, 1991
CviQI	GTAC	4 cut(s)	1379, 1484, 1877, 1991
DpnI	GATC	7 cut(s)	323, 356, 380, 612, 1035, 1091, 1217
DpnII	GATC	7 cut(s)	321, 354, 378, 610, 1033, 1089, 1215
DraI	TTTAAA	1 cut(s)	706
DrdI	GACNNNNNNGTC	1 cut(s)	2031
DseDI	GACNNNNNNGTC	1 cut(s)	2031
Eam1104I	CTCTTC	5 cut(s)	159, 1242, 1824, 1916, 2042
EarI	CTCTTC	5 cut(s)	159, 1242, 1824, 1916, 2042
EciI	GGCGGA	4 cut(s)	318, 668, 679, 1442
Eco130I	CCWWGG	1 cut(s)	1396
Eco47I	GGWCC	3 cut(s)	119, 157, 228
Eco57I	CTGAAG	2 cut(s)	183, 1848
Eco88I	CYCGRG	1 cut(s)	239
EcoNI	CCTNNNNNAGG	1 cut(s)	1604
EcoO109I	RGGNCCY	1 cut(s)	119
EcoRI	GAATTC	2 cut(s)	333, 979
EcoRII	CCWGG	2 cut(s)	248, 1599
EcoT14I	CCWWGG	1 cut(s)	1396
EcoT22I	ATGCAT	1 cut(s)	579
ErhI	CCWWGG	1 cut(s)	1396
FaqI	GGGAC	2 cut(s)	143, 329
FbaI	TGATCA	2 cut(s)	354, 1089
Fnu4HI	GCNGC	6 cut(s)	747, 873, 939, 1302, 1868, 1901
FokI	GGATG	7 cut(s)	232, 318, 542, 793, 962, 1164, 1898
Fsp4HI	GCNGC	6 cut(s)	747, 873, 939, 1302, 1868, 1901
FspBI	CTAG	3 cut(s)	1176, 1953, 2031
FspI	TGCGCA	1 cut(s)	718
GlaI	GCGC	1 cut(s)	718
GluI	GCNGC	6 cut(s)	747, 873, 939, 1302, 1868, 1901
GsuI	CTGGAG	2 cut(s)	583, 1622
HaeIII	GGCC	3 cut(s)	1277, 1394, 1650
HgaI	GACGC	1 cut(s)	1115
HhaI	GCGC	1 cut(s)	719
Hin6I	GCGC	1 cut(s)	717
HinP1I	GCGC	1 cut(s)	717
HincII	GTYRAC	2 cut(s)	1201, 2018
HindII	GTYRAC	2 cut(s)	1201, 2018
HinfI	GANTC	9 cut(s)	96, 152, 203, 235, 242, 1292, 1321, 1352, 1661
HphI	GGTGA	5 cut(s)	1088, 1114, 1218, 1849, 1979
Hpy166II	GTNNAC	6 cut(s)	401, 1122, 1201, 1226, 1877, 2018
Hpy8I	GTNNAC	6 cut(s)	401, 1122, 1201, 1226, 1877, 2018
HpyAV	CCTTC	7 cut(s)	86, 110, 267, 272, 1050, 1801, 1828
HpyCH4III	ACNGT	9 cut(s)	228, 481, 599, 678, 1030, 1725, 1915, 1946, 2028
HpyCH4IV	ACGT	4 cut(s)	107, 255, 730, 1645
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1070, 1310
HpySE526I	ACGT	4 cut(s)	107, 255, 730, 1645
HspAI	GCGC	1 cut(s)	717
Ksp22I	TGATCA	2 cut(s)	354, 1089
Kzo9I	GATC	7 cut(s)	321, 354, 378, 610, 1033, 1089, 1215
LguI	GCTCTTC	1 cut(s)	1242
LmnI	GCTCC	4 cut(s)	692, 869, 1603, 1729
Lsp1109I	GCAGC	6 cut(s)	733, 859, 950, 1288, 1879, 1912
LweI	GCATC	3 cut(s)	586, 1142, 1747
MaeI	CTAG	3 cut(s)	1176, 1953, 2031
MaeII	ACGT	4 cut(s)	107, 255, 730, 1645
MaeIII	GTNAC	6 cut(s)	511, 1024, 1094, 1762, 1821, 1928
MalI	GATC	7 cut(s)	323, 356, 380, 612, 1035, 1091, 1217
MbiI	CCGCTC	1 cut(s)	1965
MboI	GATC	7 cut(s)	321, 354, 378, 610, 1033, 1089, 1215
MboII	GAAGA	8 cut(s)	176, 795, 1259, 1702, 1841, 1933, 1984, 2029
MfeI	CAATTG	1 cut(s)	1775
MflI	RGATCY	1 cut(s)	1215
MhlI	GDGCHC	1 cut(s)	403
MlyI	GAGTC	4 cut(s)	90, 161, 251, 1330
MmeI	TCCRAC	2 cut(s)	391, 1707
Mph1103I	ATGCAT	1 cut(s)	579
MroXI	GAANNNNTTC	3 cut(s)	551, 1001, 1578
MslI	CAYNNNNRTG	2 cut(s)	1101, 1231
MspA1I	CMGCKG	1 cut(s)	561
MspCI	CTTAAG	2 cut(s)	736, 1219
MspR9I	CCNGG	2 cut(s)	250, 1601
MunI	CAATTG	1 cut(s)	1775
MvaI	CCWGG	2 cut(s)	250, 1601
MwoI	GCNNNNNNNGC	2 cut(s)	1070, 1310
NdeII	GATC	7 cut(s)	321, 354, 378, 610, 1033, 1089, 1215
NlaIV	GGNNCC	3 cut(s)	147, 159, 688
NmuCI	GTSAC	3 cut(s)	1024, 1094, 1928
NsbI	TGCGCA	1 cut(s)	718
NsiI	ATGCAT	1 cut(s)	579
NspI	RCATGY	4 cut(s)	184, 577, 1236, 1818
NspV	TTCGAA	1 cut(s)	271
PaeI	GCATGC	1 cut(s)	577
PagI	TCATGA	1 cut(s)	1102
PaqCI	CACCTGC	1 cut(s)	1237
PciI	ACATGT	1 cut(s)	180
PciSI	GCTCTTC	1 cut(s)	1242
PdmI	GAANNNNTTC	3 cut(s)	551, 1001, 1578
PfeI	GAWTC	5 cut(s)	203, 235, 1292, 1352, 1661
PflMI	CCANNNNNTGG	1 cut(s)	1364
PfoI	TCCNGGA	1 cut(s)	248
PkrI	GCNGC	6 cut(s)	748, 874, 940, 1303, 1869, 1902
PleI	GAGTC	4 cut(s)	90, 160, 250, 1329
PpsI	GAGTC	4 cut(s)	90, 160, 250, 1329
Ppu21I	YACGTR	1 cut(s)	731
PpuMI	RGGWCCY	1 cut(s)	119
PscI	ACATGT	1 cut(s)	180
Psp5II	RGGWCCY	1 cut(s)	119
Psp6I	CCWGG	2 cut(s)	248, 1599
PspGI	CCWGG	2 cut(s)	248, 1599
PspN4I	GGNNCC	3 cut(s)	147, 159, 688
PspPI	GGNCC	4 cut(s)	119, 157, 228, 1393
PspPPI	RGGWCCY	1 cut(s)	119
PstI	CTGCAG	1 cut(s)	1052
PsuI	RGATCY	1 cut(s)	1215
RsaI	GTAC	4 cut(s)	1380, 1485, 1878, 1992
RsaNI	GTAC	4 cut(s)	1379, 1484, 1877, 1991
RseI	CAYNNNNRTG	2 cut(s)	1101, 1231
SapI	GCTCTTC	1 cut(s)	1242
SatI	GCNGC	6 cut(s)	747, 873, 939, 1302, 1868, 1901
Sau3AI	GATC	7 cut(s)	321, 354, 378, 610, 1033, 1089, 1215
Sau96I	GGNCC	4 cut(s)	119, 157, 228, 1393
SchI	GAGTC	4 cut(s)	90, 161, 251, 1330
ScrFI	CCNGG	2 cut(s)	250, 1601
SduI	GDGCHC	1 cut(s)	403
SfaNI	GCATC	3 cut(s)	586, 1142, 1747
SfcI	CTRYAG	2 cut(s)	360, 1048
SfuI	TTCGAA	1 cut(s)	271
SinI	GGWCC	3 cut(s)	119, 157, 228
SmiMI	CAYNNNNRTG	2 cut(s)	1101, 1231
SmlI	CTYRAG	5 cut(s)	259, 736, 1188, 1219, 1960
SmoI	CTYRAG	5 cut(s)	259, 736, 1188, 1219, 1960
SphI	GCATGC	1 cut(s)	577
SsiI	CCGC	6 cut(s)	303, 559, 653, 690, 1427, 1965
SspMI	CTAG	3 cut(s)	1176, 1953, 2031
StyD4I	CCNGG	2 cut(s)	248, 1599
StyI	CCWWGG	1 cut(s)	1396
TaaI	ACNGT	9 cut(s)	228, 481, 599, 678, 1030, 1725, 1915, 1946, 2028
TaiI	ACGT	4 cut(s)	110, 258, 733, 1648
TaqI	TCGA	9 cut(s)	185, 206, 271, 580, 815, 1036, 1329, 1707, 2023
TaqII	GACCGA	1 cut(s)	145
TatI	WGTACW	1 cut(s)	1483
TfiI	GAWTC	5 cut(s)	203, 235, 1292, 1352, 1661
TscAI	CASTG	2 cut(s)	1092, 1877
TseFI	GTSAC	3 cut(s)	1024, 1094, 1928
TseI	GCWGC	6 cut(s)	746, 872, 938, 1301, 1867, 1900
Tsp45I	GTSAC	3 cut(s)	1024, 1094, 1928
TspDTI	ATGAA	8 cut(s)	544, 639, 795, 863, 923, 966, 1010, 1482
TspRI	CASTG	2 cut(s)	1092, 1877
Van91I	CCANNNNNTGG	1 cut(s)	1364
Vha464I	CTTAAG	2 cut(s)	736, 1219
VneI	GTGCAC	1 cut(s)	399
VpaK11BI	GGWCC	3 cut(s)	119, 157, 228
XagI	CCTNNNNNAGG	1 cut(s)	1604
XapI	RAATTY	8 cut(s)	333, 723, 765, 902, 979, 1169, 1410, 1574
XceI	RCATGY	4 cut(s)	184, 577, 1236, 1818
XcmI	CCANNNNNNNNNTGG	1 cut(s)	817
XmnI	GAANNNNTTC	3 cut(s)	551, 1001, 1578
XspI	CTAG	3 cut(s)	1176, 1953, 2031
Zsp2I	ATGCAT	1 cut(s)	579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.