Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0012572

Physical Location & Seq

Genomic Coordinates Reverse (-)

1143912 .. 1146061

Gene Structure 2150 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g01201.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGTATGTGAAGCCTCCGTATTTTGATACAGAAAACCGAGATAACAATGATGATGAAGTGTATCTAAATTCAAGTGCAGAGTTACATTTGAACCTTGCGCTGCTTGATGTTGAGTTGTTGACGATGATACAACATCATTCAGTAGTGTGGAGCACAACACCCGTTCTTGTTGTTGACGTCATTAACCCTGTTGTCACAGAAAAACCTGATGCGAAGCGGCCGCGTTGGTTCATATCTTCTGAACTCCGGGGCCAAAACCCGGACCCGGTCCACCAAACGAAACCCTCTGAAGACCCTGATGTCTGTGGGAACCCGGTCCAGCAAGCGATGCCCTCTGAAGACCACCTTGATGTCCGGGAGCCCGTGACGCCCTCTGAACCTGTACCCCTCACGCTGAAGGAGATTATGAAGAAGCACCCGAGAAGGCGGTCCAAAGAGCAACAGCTCGAGTATGCTGCAAATTATGCCAAGTGGAAGGATCCAGCGGTCGTAGATTTTCACAACTGCGTGCAGGCCTTCATCGCGGAGTTTGGAGGACCCATGCTTAAACTCCAGACTTTTACTCCTAAAACGCTAGGTGCTGCTGAAGCTAGCATGAAGAAGCACCATGATACACCTTTTGGGAATCATGTTGGTATGCATTTAAACTTGACAGGGGAGCATATGAGTTTGAAGTGCCCGTATCTCGACTATGTCCCGGAAGGCGCATATGTTGGCCCTGGTGTTGAAATATATTACAAGGGTTATACATTTAAGGGCAAGCACGATAATACGAATTGTGTTAAGCGTGCTTATCGCATGCAGTGCTGCATTTGTGGAGCAGGCCATTGGGCTACTGATTGCCCGCGTGCCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr Usp

Protein Analysis

286

Amino Acids

32.25

Weight (kDa)

6.26

Isoelectric Point (pI)

39.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012572)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g01201 FvH4_2g01202
rosa_chinensis	RchiOBHm_Chr5g0013591 RchiOBHm_Chr5g0013641
rosa_laevigata	RLG00000032033 RLG00000032035
rosa_roxburghii	Rroxscaffold_1G00062950 Rroxscaffold_1G00062970
rosa_rugosa	Rorug05G0011300 Rorug05G0011400
rosa_samantha	Rh5AG105900 Rh5AG106200 Rh5BG102400 Rh5CG113900 Rh5CG114200 Rh5DG100700 Rh5DG100900
rosa_wichuraiana	Rw5G009230 Rw5G009240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	299
AatII	GACGTC	1 cut(s)	180
AccII	CGCG	3 cut(s)	223, 524, 847
AciI	CCGC	6 cut(s)	217, 221, 427, 485, 524, 845
AclWI	GGATC	2 cut(s)	473, 486
AcoI	YGGCCR	1 cut(s)	218
AcsI	RAATTY	1 cut(s)	67
AcuI	CTGAAG	4 cut(s)	309, 357, 416, 606
AcyI	GRCGYC	2 cut(s)	177, 368
AfaI	GTAC	1 cut(s)	384
AfiI	CCNNNNNNNGG	2 cut(s)	259, 265
AgsI	TTSAA	4 cut(s)	72, 91, 673, 728
AjnI	CCWGG	1 cut(s)	718
AluBI	AGCT	2 cut(s)	445, 590
AluI	AGCT	2 cut(s)	445, 590
Alw21I	GWGCWC	1 cut(s)	155
AlwI	GGATC	2 cut(s)	473, 486
Ama87I	CYCGRG	2 cut(s)	418, 446
AoxI	GGCC	5 cut(s)	218, 250, 513, 715, 823
ApeKI	GCWGC	4 cut(s)	100, 455, 581, 807
ApoI	RAATTY	1 cut(s)	67
AspLEI	GCGC	2 cut(s)	100, 707
AspS9I	GGNCC	7 cut(s)	250, 262, 268, 316, 429, 536, 716
AsuC2I	CCSGG	6 cut(s)	248, 260, 266, 314, 356, 698
AsuNHI	GCTAGC	1 cut(s)	590
AvaI	CYCGRG	2 cut(s)	418, 446
AvaII	GGWCC	5 cut(s)	262, 268, 316, 429, 536
BaeGI	GKGCMC	1 cut(s)	680
BamHI	GGATCC	1 cut(s)	478
BanII	GRGCYC	1 cut(s)	363
BbsI	GAAGAC	2 cut(s)	297, 345
Bbv12I	GWGCWC	1 cut(s)	155
BbvI	GCAGC	4 cut(s)	87, 442, 568, 794
BcgI	CGANNNNNNTGC	2 cut(s)	437, 471
BciT130I	CCWGG	1 cut(s)	720
BcnI	CCSGG	6 cut(s)	248, 260, 266, 314, 356, 698
BfaI	CTAG	2 cut(s)	575, 591
BisI	GCNGC	6 cut(s)	101, 218, 221, 456, 582, 808
BlsI	GCNGC	6 cut(s)	102, 219, 222, 457, 583, 809
Bme1390I	CCNGG	7 cut(s)	248, 260, 266, 314, 356, 698, 720
Bme18I	GGWCC	5 cut(s)	262, 268, 316, 429, 536
BmeT110I	CYCGRG	2 cut(s)	418, 446
BmgT120I	GGNCC	7 cut(s)	250, 262, 268, 316, 429, 536, 716
BmiI	GGNNCC	6 cut(s)	251, 264, 311, 360, 480, 538
BmrFI	CCNGG	7 cut(s)	248, 260, 266, 314, 356, 698, 720
BmsI	GCATC	2 cut(s)	199, 318
BmtI	GCTAGC	1 cut(s)	594
BpiI	GAAGAC	2 cut(s)	297, 345
BpmI	CTGGAG	1 cut(s)	536
BpuMI	CCSGG	6 cut(s)	248, 260, 266, 314, 356, 698
BsaHI	GRCGYC	2 cut(s)	177, 368
BsaJI	CCNNGG	2 cut(s)	247, 718
BsaXI	ACNNNNNCTCC	2 cut(s)	547, 577
Bsc4I	CCNNNNNNNGG	2 cut(s)	259, 265
BseBI	CCWGG	1 cut(s)	720
BseDI	CCNNGG	2 cut(s)	247, 718
BseLI	CCNNNNNNNGG	2 cut(s)	259, 265
BseSI	GKGCMC	1 cut(s)	680
BseX3I	CGGCCG	1 cut(s)	218
BseXI	GCAGC	4 cut(s)	87, 442, 568, 794
BsgI	GTGCAG	2 cut(s)	96, 530
Bsh1236I	CGCG	3 cut(s)	223, 524, 847
Bsh1285I	CGRYCG	2 cut(s)	221, 489
BshFI	GGCC	5 cut(s)	220, 252, 515, 717, 825
BsiEI	CGRYCG	2 cut(s)	221, 489
BsiHKAI	GWGCWC	1 cut(s)	155
BsiHKCI	CYCGRG	2 cut(s)	418, 446
BsiSI	CCGG	6 cut(s)	247, 260, 266, 314, 355, 698
BslFI	GGGAC	1 cut(s)	680
BslI	CCNNNNNNNGG	2 cut(s)	259, 265
BsmFI	GGGAC	1 cut(s)	680
BsnI	GGCC	5 cut(s)	220, 252, 515, 717, 825
BsoBI	CYCGRG	2 cut(s)	418, 446
Bsp1286I	GDGCHC	3 cut(s)	155, 363, 680
Bsp143I	GATC	1 cut(s)	478
BspACI	CCGC	6 cut(s)	217, 221, 427, 485, 524, 845
BspANI	GGCC	5 cut(s)	220, 252, 515, 717, 825
BspFNI	CGCG	3 cut(s)	223, 524, 847
BspLI	GGNNCC	6 cut(s)	251, 264, 311, 360, 480, 538
BspOI	GCTAGC	1 cut(s)	594
BspPI	GGATC	2 cut(s)	473, 486
BssECI	CCNNGG	2 cut(s)	247, 718
BssMI	GATC	1 cut(s)	478
BssNI	GRCGYC	2 cut(s)	177, 368
Bst2UI	CCWGG	1 cut(s)	720
BstACI	GRCGYC	2 cut(s)	177, 368
BstAPI	GCANNNNNTGC	3 cut(s)	328, 464, 804
BstFNI	CGCG	3 cut(s)	223, 524, 847
BstHHI	GCGC	2 cut(s)	100, 707
BstKTI	GATC	1 cut(s)	481
BstMBI	GATC	1 cut(s)	478
BstMCI	CGRYCG	2 cut(s)	221, 489
BstMWI	GCNNNNNNNGC	6 cut(s)	328, 367, 464, 521, 587, 804
BstNI	CCWGG	1 cut(s)	720
BstNSI	RCATGY	1 cut(s)	802
BstSCI	CCNGG	7 cut(s)	246, 258, 264, 312, 354, 696, 718
BstSLI	GKGCMC	1 cut(s)	680
BstUI	CGCG	3 cut(s)	223, 524, 847
BstV1I	GCAGC	4 cut(s)	87, 442, 568, 794
BstV2I	GAAGAC	2 cut(s)	297, 345
BstX2I	RGATCY	1 cut(s)	478
BstYI	RGATCY	1 cut(s)	478
BstZI	CGGCCG	1 cut(s)	218
BsuRI	GGCC	5 cut(s)	220, 252, 515, 717, 825
BtgZI	GCGATG	2 cut(s)	341, 505
BtsI	GCAGTG	1 cut(s)	809
BtsIMutI	CAGTG	1 cut(s)	809
CciNI	GCGGCCGC	1 cut(s)	218
CfoI	GCGC	2 cut(s)	100, 707
Cfr13I	GGNCC	7 cut(s)	250, 262, 268, 316, 429, 536, 716
CseI	GACGC	1 cut(s)	376
Csp6I	GTAC	1 cut(s)	383
CviAII	CATG	5 cut(s)	541, 595, 608, 629, 799
CviQI	GTAC	1 cut(s)	383
DpnI	GATC	1 cut(s)	480
DpnII	GATC	1 cut(s)	478
DraI	TTTAAA	1 cut(s)	645
DrdI	GACNNNNNNGTC	1 cut(s)	299
DseDI	GACNNNNNNGTC	1 cut(s)	299
EaeI	YGGCCR	1 cut(s)	218
EagI	CGGCCG	1 cut(s)	218
EclXI	CGGCCG	1 cut(s)	218
Eco147I	AGGCCT	1 cut(s)	515
Eco24I	GRGCYC	1 cut(s)	363
Eco47I	GGWCC	5 cut(s)	262, 268, 316, 429, 536
Eco52I	CGGCCG	1 cut(s)	218
Eco57I	CTGAAG	4 cut(s)	309, 357, 416, 606
Eco88I	CYCGRG	2 cut(s)	418, 446
EcoO109I	RGGNCCY	1 cut(s)	536
EcoRII	CCWGG	1 cut(s)	718
EcoT22I	ATGCAT	1 cut(s)	642
EcoT38I	GRGCYC	1 cut(s)	363
FaeI	CATG	5 cut(s)	544, 598, 611, 632, 802
FalI	AAGNNNNNCTT	2 cut(s)	330, 362
FaqI	GGGAC	1 cut(s)	680
FatI	CATG	5 cut(s)	540, 594, 607, 628, 798
FauI	CCCGC	1 cut(s)	852
FauNDI	CATATG	2 cut(s)	663, 709
Fnu4HI	GCNGC	6 cut(s)	101, 218, 221, 456, 582, 808
FriOI	GRGCYC	1 cut(s)	363
Fsp4HI	GCNGC	6 cut(s)	101, 218, 221, 456, 582, 808
FspBI	CTAG	2 cut(s)	575, 591
GlaI	GCGC	2 cut(s)	99, 706
GluI	GCNGC	6 cut(s)	101, 218, 221, 456, 582, 808
GsuI	CTGGAG	1 cut(s)	536
HaeIII	GGCC	5 cut(s)	220, 252, 515, 717, 825
HapII	CCGG	6 cut(s)	247, 260, 266, 314, 355, 698
HgaI	GACGC	1 cut(s)	376
HhaI	GCGC	2 cut(s)	100, 707
Hin1I	GRCGYC	2 cut(s)	177, 368
Hin1II	CATG	5 cut(s)	544, 598, 611, 632, 802
Hin6I	GCGC	2 cut(s)	98, 705
HinP1I	GCGC	2 cut(s)	98, 705
HincII	GTYRAC	2 cut(s)	120, 175
HindII	GTYRAC	2 cut(s)	120, 175
HinfI	GANTC	1 cut(s)	625
HpaII	CCGG	6 cut(s)	247, 260, 266, 314, 355, 698
Hpy166II	GTNNAC	3 cut(s)	120, 175, 271
Hpy188I	TCNGA	4 cut(s)	241, 289, 337, 376
Hpy188III	TCNNGA	2 cut(s)	553, 686
Hpy8I	GTNNAC	3 cut(s)	120, 175, 271
HpyAV	CCTTC	5 cut(s)	391, 417, 469, 526, 695
HpyCH4IV	ACGT	1 cut(s)	177
HpyCH4V	TGCA	6 cut(s)	77, 458, 511, 640, 802, 810
HpyF10VI	GCNNNNNNNGC	6 cut(s)	328, 367, 464, 521, 587, 804
HpySE526I	ACGT	1 cut(s)	177
Hsp92I	GRCGYC	2 cut(s)	177, 368
Hsp92II	CATG	5 cut(s)	544, 598, 611, 632, 802
HspAI	GCGC	2 cut(s)	98, 705
Kzo9I	GATC	1 cut(s)	478
LmnI	GCTCC	4 cut(s)	150, 358, 658, 818
Lsp1109I	GCAGC	4 cut(s)	87, 442, 568, 794
LweI	GCATC	2 cut(s)	199, 318
MaeI	CTAG	2 cut(s)	575, 591
MaeII	ACGT	1 cut(s)	177
MaeIII	GTNAC	3 cut(s)	81, 193, 364
MalI	GATC	1 cut(s)	480
MboI	GATC	1 cut(s)	478
MboII	GAAGA	5 cut(s)	228, 302, 350, 421, 610
MflI	RGATCY	1 cut(s)	478
MhlI	GDGCHC	3 cut(s)	155, 363, 680
MluCI	AATT	3 cut(s)	67, 460, 775
MnlI	CCTC	6 cut(s)	24, 295, 343, 382, 398, 527
Mph1103I	ATGCAT	1 cut(s)	642
MseI	TTAA	5 cut(s)	183, 546, 644, 753, 783
MslI	CAYNNNNRTG	1 cut(s)	348
MspA1I	CMGCKG	1 cut(s)	485
MspI	CCGG	6 cut(s)	247, 260, 266, 314, 355, 698
MspR9I	CCNGG	7 cut(s)	248, 260, 266, 314, 356, 698, 720
MvaI	CCWGG	1 cut(s)	720
MvnI	CGCG	3 cut(s)	223, 524, 847
MwoI	GCNNNNNNNGC	6 cut(s)	328, 367, 464, 521, 587, 804
NciI	CCSGG	6 cut(s)	248, 260, 266, 314, 356, 698
NdeI	CATATG	2 cut(s)	663, 709
NdeII	GATC	1 cut(s)	478
NheI	GCTAGC	1 cut(s)	590
NlaIII	CATG	5 cut(s)	544, 598, 611, 632, 802
NlaIV	GGNNCC	6 cut(s)	251, 264, 311, 360, 480, 538
NmuCI	GTSAC	2 cut(s)	193, 364
NotI	GCGGCCGC	1 cut(s)	218
NsiI	ATGCAT	1 cut(s)	642
NspI	RCATGY	1 cut(s)	802
PaeI	GCATGC	1 cut(s)	802
PaeR7I	CTCGAG	1 cut(s)	446
PceI	AGGCCT	1 cut(s)	515
PfeI	GAWTC	1 cut(s)	625
PflFI	GACNNNGTC	2 cut(s)	266, 692
PfoI	TCCNGGA	2 cut(s)	354, 696
PkrI	GCNGC	6 cut(s)	102, 219, 222, 457, 583, 809
PpuMI	RGGWCCY	1 cut(s)	536
Psp5II	RGGWCCY	1 cut(s)	536
Psp6I	CCWGG	1 cut(s)	718
PspGI	CCWGG	1 cut(s)	718
PspN4I	GGNNCC	6 cut(s)	251, 264, 311, 360, 480, 538
PspPI	GGNCC	7 cut(s)	250, 262, 268, 316, 429, 536, 716
PspPPI	RGGWCCY	1 cut(s)	536
PspXI	VCTCGAGB	1 cut(s)	446
PsuI	RGATCY	1 cut(s)	478
PsyI	GACNNNGTC	2 cut(s)	266, 692
RsaI	GTAC	1 cut(s)	384
RsaNI	GTAC	1 cut(s)	383
RseI	CAYNNNNRTG	1 cut(s)	348
SaqAI	TTAA	5 cut(s)	183, 546, 644, 753, 783
SatI	GCNGC	6 cut(s)	101, 218, 221, 456, 582, 808
Sau3AI	GATC	1 cut(s)	478
Sau96I	GGNCC	7 cut(s)	250, 262, 268, 316, 429, 536, 716
ScrFI	CCNGG	7 cut(s)	248, 260, 266, 314, 356, 698, 720
SduI	GDGCHC	3 cut(s)	155, 363, 680
SetI	ASST	9 cut(s)	96, 180, 208, 348, 382, 447, 580, 592, 619
SfaNI	GCATC	2 cut(s)	199, 318
Sfr274I	CTCGAG	1 cut(s)	446
SinI	GGWCC	5 cut(s)	262, 268, 316, 429, 536
SlaI	CTCGAG	1 cut(s)	446
SmiMI	CAYNNNNRTG	1 cut(s)	348
SmlI	CTYRAG	1 cut(s)	446
SmoI	CTYRAG	1 cut(s)	446
SphI	GCATGC	1 cut(s)	802
Sse9I	AATT	3 cut(s)	67, 460, 775
SseBI	AGGCCT	1 cut(s)	515
SsiI	CCGC	6 cut(s)	217, 221, 427, 485, 524, 845
SspMI	CTAG	2 cut(s)	575, 591
StuI	AGGCCT	1 cut(s)	515
StyD4I	CCNGG	7 cut(s)	246, 258, 264, 312, 354, 696, 718
TaiI	ACGT	1 cut(s)	180
TaqI	TCGA	2 cut(s)	447, 687
TasI	AATT	3 cut(s)	67, 460, 775
TauI	GCSGC	2 cut(s)	220, 223
TfiI	GAWTC	1 cut(s)	625
Tru1I	TTAA	5 cut(s)	183, 546, 644, 753, 783
Tru9I	TTAA	5 cut(s)	183, 546, 644, 753, 783
TscAI	CASTG	1 cut(s)	809
TseFI	GTSAC	2 cut(s)	193, 364
TseI	GCWGC	4 cut(s)	100, 455, 581, 807
Tsp45I	GTSAC	2 cut(s)	193, 364
TspDTI	ATGAA	5 cut(s)	69, 220, 422, 508, 611
TspGWI	ACGGA	1 cut(s)	6
TspRI	CASTG	1 cut(s)	809
Tth111I	GACNNNGTC	2 cut(s)	266, 692
VpaK11BI	GGWCC	5 cut(s)	262, 268, 316, 429, 536
XapI	RAATTY	1 cut(s)	67
XceI	RCATGY	1 cut(s)	802
XhoI	CTCGAG	1 cut(s)	446
XspI	CTAG	2 cut(s)	575, 591
ZraI	GACGTC	1 cut(s)	178
Zsp2I	ATGCAT	1 cut(s)	642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.