Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0012572

Physical Location & Seq

Genomic Coordinates Reverse (-)

1153166 .. 1154861

Gene Structure 1696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g01202.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGCCCCTATCCCCTGTCAAGGAAGAGGGCGACATCGTGCTTAGCCTGAAGGGGGCCCGTTCGTCCTCGTCTTCTGAAGACCCTGCTGTCACAGAAAAACCTGATGCGAAGCGGCGGCGTTGGTTCATATCTTCTGAACTCCTGGACGCCCCGCACCAGAACCCGGACCCGGTCCACCAAGCAAAACCCTCTGAAGACCCTGATGTCCCGGTCCAGCAAGCGACGACCTCTGACGGGGTCCAGCCCTCTGAACCTCTTACGCTGCAGGAGATTATGAAGAAGCACCCGAGAAGACAGTCCAAAGAGGAGCAGCTCGAGTATGCTGAGCATTATGCCAAGTGGAAGGCTCCATGGGTCACAGATTTTCACAACCGCGTGCTGGCCATCATTGCGGAGTTTGGAGGAACCAAGCTAAAAGACCAGACTTTTACTCCTGAAACGCTAGCTGCTGCTGAAGCTAACATGAAGAAGCACCGTGATACACCTTTTCGGAATCATGTTGGGGAGCATATGAGTTTGGAGTGCCCGTATCTCGACTATGTCCCAGAAGGCGCATCTGTTGGCCCTGGTGTTGAAATATATTGCAAGGGTTGTACATTTAAGGGGAAGCACGATAATACGAATTGTGTTAAGCGTGCTTATCGCATGCAGTGCTGCATTTGTGGAGCAGGCCACTGGGCTACTGATTGCCCGCTTGCCAAACAGCACACGACGAATCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

241

Amino Acids

26.83

Weight (kDa)

6.41

Isoelectric Point (pI)

58.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012572)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g01201 FvH4_2g01202
rosa_chinensis	RchiOBHm_Chr5g0013591 RchiOBHm_Chr5g0013641
rosa_laevigata	RLG00000032033 RLG00000032035
rosa_roxburghii	Rroxscaffold_1G00062950 Rroxscaffold_1G00062970
rosa_rugosa	Rorug05G0011300 Rorug05G0011400
rosa_samantha	Rh5AG105900 Rh5AG106200 Rh5BG102400 Rh5CG113900 Rh5CG114200 Rh5DG100700 Rh5DG100900
rosa_wichuraiana	Rw5G009230 Rw5G009240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	86, 203
AccII	CGCG	1 cut(s)	375
AciI	CCGC	6 cut(s)	112, 115, 152, 373, 392, 692
AcoI	YGGCCR	1 cut(s)	381
AcuI	CTGAAG	4 cut(s)	68, 96, 213, 474
AcyI	GRCGYC	1 cut(s)	147
AfaI	GTAC	1 cut(s)	595
AfiI	CCNNNNNNNGG	6 cut(s)	19, 52, 163, 169, 234, 379
AgsI	TTSAA	1 cut(s)	575
AjnI	CCWGG	2 cut(s)	141, 565
AluBI	AGCT	4 cut(s)	313, 412, 446, 458
AluI	AGCT	4 cut(s)	313, 412, 446, 458
Ama87I	CYCGRG	2 cut(s)	286, 314
AoxI	GGCC	4 cut(s)	54, 381, 562, 670
ApaI	GGGCCC	1 cut(s)	58
ApeKI	GCWGC	5 cut(s)	262, 310, 446, 449, 654
AspLEI	GCGC	1 cut(s)	554
AspS9I	GGNCC	7 cut(s)	54, 55, 166, 172, 211, 238, 563
AsuC2I	CCSGG	3 cut(s)	164, 170, 209
AsuNHI	GCTAGC	1 cut(s)	442
AvaI	CYCGRG	2 cut(s)	286, 314
AvaII	GGWCC	4 cut(s)	166, 172, 211, 238
BaeGI	GKGCMC	2 cut(s)	58, 527
BalI	TGGCCA	1 cut(s)	383
BanII	GRGCYC	1 cut(s)	58
BbsI	GAAGAC	4 cut(s)	63, 84, 201, 298
BbvI	GCAGC	5 cut(s)	249, 322, 433, 436, 641
BccI	CCATC	1 cut(s)	392
BciT130I	CCWGG	2 cut(s)	143, 567
BcnI	CCSGG	3 cut(s)	164, 170, 209
BfaI	CTAG	1 cut(s)	443
BfmI	CTRYAG	1 cut(s)	263
BisI	GCNGC	7 cut(s)	113, 116, 263, 311, 447, 450, 655
BlpI	GCTNAGC	2 cut(s)	41, 324
BlsI	GCNGC	7 cut(s)	114, 117, 264, 312, 448, 451, 656
Bme1390I	CCNGG	5 cut(s)	143, 164, 170, 209, 567
Bme18I	GGWCC	4 cut(s)	166, 172, 211, 238
BmeT110I	CYCGRG	2 cut(s)	286, 314
BmgT120I	GGNCC	7 cut(s)	54, 55, 166, 172, 211, 238, 563
BmiI	GGNNCC	6 cut(s)	55, 56, 168, 239, 348, 406
BmrFI	CCNGG	5 cut(s)	143, 164, 170, 209, 567
BmrI	ACTGGG	1 cut(s)	685
BmsI	GCATC	2 cut(s)	94, 563
BmtI	GCTAGC	1 cut(s)	446
BmuI	ACTGGG	1 cut(s)	685
BpiI	GAAGAC	4 cut(s)	63, 84, 201, 298
Bpu1102I	GCTNAGC	2 cut(s)	41, 324
BpuMI	CCSGG	3 cut(s)	164, 170, 209
BsaHI	GRCGYC	1 cut(s)	147
BsaJI	CCNNGG	2 cut(s)	350, 565
BsaXI	ACNNNNNCTCC	4 cut(s)	415, 445, 512, 542
Bsc4I	CCNNNNNNNGG	6 cut(s)	19, 52, 163, 169, 234, 379
Bse1I	ACTGG	1 cut(s)	680
Bse3DI	GCAATG	1 cut(s)	387
BseBI	CCWGG	2 cut(s)	143, 567
BseDI	CCNNGG	2 cut(s)	350, 565
BseLI	CCNNNNNNNGG	6 cut(s)	19, 52, 163, 169, 234, 379
BseMI	GCAATG	1 cut(s)	387
BseMII	CTCAG	1 cut(s)	315
BseNI	ACTGG	1 cut(s)	680
BseRI	GAGGAG	1 cut(s)	320
BseSI	GKGCMC	2 cut(s)	58, 527
BseXI	GCAGC	5 cut(s)	249, 322, 433, 436, 641
Bsh1236I	CGCG	1 cut(s)	375
BshFI	GGCC	4 cut(s)	56, 383, 564, 672
BsiHKCI	CYCGRG	2 cut(s)	286, 314
BsiSI	CCGG	3 cut(s)	164, 170, 209
BslFI	GGGAC	2 cut(s)	191, 527
BslI	CCNNNNNNNGG	6 cut(s)	19, 52, 163, 169, 234, 379
BsmFI	GGGAC	2 cut(s)	191, 527
BsnI	GGCC	4 cut(s)	56, 383, 564, 672
BsoBI	CYCGRG	2 cut(s)	286, 314
Bsp120I	GGGCCC	1 cut(s)	54
Bsp1286I	GDGCHC	2 cut(s)	58, 527
Bsp1407I	TGTACA	1 cut(s)	593
Bsp1720I	GCTNAGC	2 cut(s)	41, 324
Bsp19I	CCATGG	1 cut(s)	350
BspACI	CCGC	6 cut(s)	112, 115, 152, 373, 392, 692
BspANI	GGCC	4 cut(s)	56, 383, 564, 672
BspCNI	CTCAG	1 cut(s)	316
BspFNI	CGCG	1 cut(s)	375
BspLI	GGNNCC	6 cut(s)	55, 56, 168, 239, 348, 406
BspMAI	CTGCAG	1 cut(s)	267
BspOI	GCTAGC	1 cut(s)	446
BsrDI	GCAATG	1 cut(s)	387
BsrGI	TGTACA	1 cut(s)	593
BsrI	ACTGG	1 cut(s)	680
BssECI	CCNNGG	2 cut(s)	350, 565
BssNI	GRCGYC	1 cut(s)	147
BssT1I	CCWWGG	1 cut(s)	350
Bst2UI	CCWGG	2 cut(s)	143, 567
Bst4CI	ACNGT	2 cut(s)	297, 476
Bst6I	CTCTTC	1 cut(s)	18
BstACI	GRCGYC	1 cut(s)	147
BstAPI	GCANNNNNTGC	1 cut(s)	651
BstAUI	TGTACA	1 cut(s)	593
BstC8I	GCNNGC	9 cut(s)	219, 377, 381, 444, 636, 647, 670, 692, 696
BstDEI	CTNAG	2 cut(s)	41, 324
BstDSI	CCRYGG	1 cut(s)	350
BstFNI	CGCG	1 cut(s)	375
BstHHI	GCGC	1 cut(s)	554
BstMWI	GCNNNNNNNGC	3 cut(s)	389, 455, 651
BstNI	CCWGG	2 cut(s)	143, 567
BstNSI	RCATGY	1 cut(s)	649
BstSCI	CCNGG	5 cut(s)	141, 162, 168, 207, 565
BstSFI	CTRYAG	1 cut(s)	263
BstSLI	GKGCMC	2 cut(s)	58, 527
BstUI	CGCG	1 cut(s)	375
BstV1I	GCAGC	5 cut(s)	249, 322, 433, 436, 641
BstV2I	GAAGAC	4 cut(s)	63, 84, 201, 298
BsuRI	GGCC	4 cut(s)	56, 383, 564, 672
BtgI	CCRYGG	1 cut(s)	350
BtsI	GCAGTG	1 cut(s)	656
BtsIMutI	CAGTG	2 cut(s)	656, 673
Cac8I	GCNNGC	9 cut(s)	219, 377, 381, 444, 636, 647, 670, 692, 696
CfoI	GCGC	1 cut(s)	554
Cfr13I	GGNCC	7 cut(s)	54, 55, 166, 172, 211, 238, 563
CseI	GACGC	1 cut(s)	155
Csp6I	GTAC	1 cut(s)	594
CviAII	CATG	4 cut(s)	351, 463, 497, 646
CviQI	GTAC	1 cut(s)	594
DdeI	CTNAG	2 cut(s)	41, 324
DrdI	GACNNNNNNGTC	2 cut(s)	86, 203
DseDI	GACNNNNNNGTC	2 cut(s)	86, 203
EaeI	YGGCCR	1 cut(s)	381
Eam1104I	CTCTTC	1 cut(s)	18
EarI	CTCTTC	1 cut(s)	18
Eco130I	CCWWGG	1 cut(s)	350
Eco24I	GRGCYC	1 cut(s)	58
Eco47I	GGWCC	4 cut(s)	166, 172, 211, 238
Eco57I	CTGAAG	4 cut(s)	68, 96, 213, 474
Eco88I	CYCGRG	2 cut(s)	286, 314
EcoO109I	RGGNCCY	1 cut(s)	54
EcoRII	CCWGG	2 cut(s)	141, 565
EcoT14I	CCWWGG	1 cut(s)	350
EcoT38I	GRGCYC	1 cut(s)	58
ErhI	CCWWGG	1 cut(s)	350
FaeI	CATG	4 cut(s)	354, 466, 500, 649
FaqI	GGGAC	2 cut(s)	191, 527
FatI	CATG	4 cut(s)	350, 462, 496, 645
FauI	CCCGC	2 cut(s)	159, 699
FauNDI	CATATG	1 cut(s)	510
Fnu4HI	GCNGC	7 cut(s)	113, 116, 263, 311, 447, 450, 655
FriOI	GRGCYC	1 cut(s)	58
Fsp4HI	GCNGC	7 cut(s)	113, 116, 263, 311, 447, 450, 655
FspBI	CTAG	1 cut(s)	443
GlaI	GCGC	1 cut(s)	553
GluI	GCNGC	7 cut(s)	113, 116, 263, 311, 447, 450, 655
HaeIII	GGCC	4 cut(s)	56, 383, 564, 672
HapII	CCGG	3 cut(s)	164, 170, 209
HgaI	GACGC	1 cut(s)	155
HhaI	GCGC	1 cut(s)	554
Hin1I	GRCGYC	1 cut(s)	147
Hin1II	CATG	4 cut(s)	354, 466, 500, 649
Hin6I	GCGC	1 cut(s)	552
HinP1I	GCGC	1 cut(s)	552
HinfI	GANTC	2 cut(s)	493, 715
HpaII	CCGG	3 cut(s)	164, 170, 209
Hpy166II	GTNNAC	1 cut(s)	175
Hpy188I	TCNGA	6 cut(s)	76, 136, 193, 232, 250, 492
Hpy188III	TCNNGA	2 cut(s)	434, 533
Hpy8I	GTNNAC	1 cut(s)	175
Hpy99I	CGWCG	2 cut(s)	226, 715
HpyAV	CCTTC	3 cut(s)	43, 337, 542
HpyCH4III	ACNGT	2 cut(s)	297, 476
HpyCH4V	TGCA	4 cut(s)	265, 585, 649, 657
HpyF10VI	GCNNNNNNNGC	3 cut(s)	389, 455, 651
HpyF3I	CTNAG	2 cut(s)	41, 324
Hsp92I	GRCGYC	1 cut(s)	147
Hsp92II	CATG	4 cut(s)	354, 466, 500, 649
HspAI	GCGC	1 cut(s)	552
LmnI	GCTCC	4 cut(s)	307, 352, 505, 665
Lsp1109I	GCAGC	5 cut(s)	249, 322, 433, 436, 641
LweI	GCATC	2 cut(s)	94, 563
MaeI	CTAG	1 cut(s)	443
MaeIII	GTNAC	2 cut(s)	88, 355
MboII	GAAGA	8 cut(s)	35, 63, 89, 123, 206, 289, 303, 478
MhlI	GDGCHC	2 cut(s)	58, 527
MlsI	TGGCCA	1 cut(s)	383
MluCI	AATT	1 cut(s)	622
MluNI	TGGCCA	1 cut(s)	383
MnlI	CCTC	8 cut(s)	19, 76, 199, 238, 256, 264, 298, 395
Mox20I	TGGCCA	1 cut(s)	383
MscI	TGGCCA	1 cut(s)	383
MseI	TTAA	2 cut(s)	600, 630
Msp20I	TGGCCA	1 cut(s)	383
MspI	CCGG	3 cut(s)	164, 170, 209
MspR9I	CCNGG	5 cut(s)	143, 164, 170, 209, 567
MvaI	CCWGG	2 cut(s)	143, 567
MvnI	CGCG	1 cut(s)	375
MwoI	GCNNNNNNNGC	3 cut(s)	389, 455, 651
NciI	CCSGG	3 cut(s)	164, 170, 209
NcoI	CCATGG	1 cut(s)	350
NdeI	CATATG	1 cut(s)	510
NheI	GCTAGC	1 cut(s)	442
NlaIII	CATG	4 cut(s)	354, 466, 500, 649
NlaIV	GGNNCC	6 cut(s)	55, 56, 168, 239, 348, 406
NmuCI	GTSAC	2 cut(s)	88, 355
NspI	RCATGY	1 cut(s)	649
PaeI	GCATGC	1 cut(s)	649
PaeR7I	CTCGAG	1 cut(s)	314
PfeI	GAWTC	2 cut(s)	493, 715
PflFI	GACNNNGTC	3 cut(s)	170, 236, 539
PfoI	TCCNGGA	1 cut(s)	141
PkrI	GCNGC	7 cut(s)	114, 117, 264, 312, 448, 451, 656
Psp6I	CCWGG	2 cut(s)	141, 565
PspGI	CCWGG	2 cut(s)	141, 565
PspN4I	GGNNCC	6 cut(s)	55, 56, 168, 239, 348, 406
PspOMI	GGGCCC	1 cut(s)	54
PspPI	GGNCC	7 cut(s)	54, 55, 166, 172, 211, 238, 563
PspXI	VCTCGAGB	1 cut(s)	314
PstI	CTGCAG	1 cut(s)	267
PsyI	GACNNNGTC	3 cut(s)	170, 236, 539
RsaI	GTAC	1 cut(s)	595
RsaNI	GTAC	1 cut(s)	594
SaqAI	TTAA	2 cut(s)	600, 630
SatI	GCNGC	7 cut(s)	113, 116, 263, 311, 447, 450, 655
Sau96I	GGNCC	7 cut(s)	54, 55, 166, 172, 211, 238, 563
ScrFI	CCNGG	5 cut(s)	143, 164, 170, 209, 567
SduI	GDGCHC	2 cut(s)	58, 527
SetI	ASST	8 cut(s)	103, 230, 256, 315, 414, 448, 460, 487
SfaNI	GCATC	2 cut(s)	94, 563
SfcI	CTRYAG	1 cut(s)	263
Sfr274I	CTCGAG	1 cut(s)	314
SinI	GGWCC	4 cut(s)	166, 172, 211, 238
SlaI	CTCGAG	1 cut(s)	314
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
SphI	GCATGC	1 cut(s)	649
Sse9I	AATT	1 cut(s)	622
SsiI	CCGC	6 cut(s)	112, 115, 152, 373, 392, 692
SspMI	CTAG	1 cut(s)	443
StyD4I	CCNGG	5 cut(s)	141, 162, 168, 207, 565
StyI	CCWWGG	1 cut(s)	350
TaaI	ACNGT	2 cut(s)	297, 476
TaqI	TCGA	2 cut(s)	315, 534
TasI	AATT	1 cut(s)	622
TatI	WGTACW	1 cut(s)	593
TauI	GCSGC	2 cut(s)	115, 118
TfiI	GAWTC	2 cut(s)	493, 715
Tru1I	TTAA	2 cut(s)	600, 630
Tru9I	TTAA	2 cut(s)	600, 630
TscAI	CASTG	2 cut(s)	656, 680
TseFI	GTSAC	2 cut(s)	88, 355
TseI	GCWGC	5 cut(s)	262, 310, 446, 449, 654
Tsp45I	GTSAC	2 cut(s)	88, 355
TspDTI	ATGAA	3 cut(s)	115, 290, 479
TspRI	CASTG	2 cut(s)	656, 680
Tth111I	GACNNNGTC	3 cut(s)	170, 236, 539
VpaK11BI	GGWCC	4 cut(s)	166, 172, 211, 238
XceI	RCATGY	1 cut(s)	649
XhoI	CTCGAG	1 cut(s)	314
XspI	CTAG	1 cut(s)	443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.