Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0012572

Physical Location & Seq

Genomic Coordinates Reverse (-)

709841 .. 711521

Gene Structure 1681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0011300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGCCGGCGTTGAGGTTGCACCAGCAGCAACATTTCAAGAGACTGAGACAAAGCCAGTCGAAGTGACCAAGACCGAAGAGCCAGTAGCTGCACCACCTGCCCCCGAGACTGAAACCACCGAAGAACCAAAGGAAACAACACCACCAGCAGAAGCAGAAGCAGAGGCACCAGCTGCTCCGGAACCTGAAGCAGAAGCAGAAGCTCCAGTTGCACCAGTTGAAGTTGAGACCAAGGAGGTGGCAATAGAGGAAGTTAAGGCTGAGGCCAAGGAGGTAGCAGCAGAACCAGAAGCAGAGAAACCAGTGGAAGAAGAGGCTCAAGAGGTTAAAGCCGAAGAGCCTGCTGCTGCTGTTGCTGAGGAGACCACTGAAGCTGCTGAGGAACCAGTGGCGGCTCCGGTAGTCGATGAGAAAGTAGAGAAACCAGTTGAAGCACCAAAGGAGCCTGCTGAGGTTACCACAGCAGAAGTTCCAGTTGAGAAGGCTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

163

Amino Acids

17.01

Weight (kDa)

4.05

Isoelectric Point (pI)

78.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012572)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g01201 FvH4_2g01202
rosa_chinensis	RchiOBHm_Chr5g0013591 RchiOBHm_Chr5g0013641
rosa_laevigata	RLG00000032033 RLG00000032035
rosa_roxburghii	Rroxscaffold_1G00062950 Rroxscaffold_1G00062970
rosa_rugosa	Rorug05G0011300 Rorug05G0011400
rosa_samantha	Rh5AG105900 Rh5AG106200 Rh5BG102400 Rh5CG113900 Rh5CG114200 Rh5DG100700 Rh5DG100900
rosa_wichuraiana	Rw5G009230 Rw5G009240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	106
Acc36I	ACCTGC	1 cut(s)	106
AccB1I	GGYRCC	1 cut(s)	166
AccIII	TCCGGA	1 cut(s)	178
AciI	CCGC	1 cut(s)	392
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	2 cut(s)	207, 390
AgsI	TTSAA	3 cut(s)	38, 221, 431
AluBI	AGCT	4 cut(s)	89, 173, 203, 374
AluI	AGCT	4 cut(s)	89, 173, 203, 374
Alw26I	GTCTC	5 cut(s)	35, 41, 101, 221, 356
AlwNI	CAGNNNCTG	1 cut(s)	89
Ama87I	CYCGRG	1 cut(s)	104
Aor13HI	TCCGGA	1 cut(s)	178
AoxI	GGCC	2 cut(s)	3, 264
ApeKI	GCWGC	7 cut(s)	26, 89, 173, 278, 344, 347, 374
AvaI	CYCGRG	1 cut(s)	104
BanI	GGYRCC	1 cut(s)	166
BbvCI	CCTCAGC	4 cut(s)	261, 357, 378, 450
BbvI	GCAGC	7 cut(s)	38, 76, 160, 290, 331, 334, 361
BcgI	CGANNNNNNTGC	2 cut(s)	323, 357
BcoDI	GTCTC	5 cut(s)	35, 41, 101, 221, 356
BfuAI	ACCTGC	1 cut(s)	106
BisI	GCNGC	8 cut(s)	27, 90, 174, 279, 345, 348, 375, 393
BlsI	GCNGC	8 cut(s)	28, 91, 175, 280, 346, 349, 376, 394
BmeT110I	CYCGRG	1 cut(s)	104
BmiI	GGNNCC	5 cut(s)	168, 183, 384, 396, 444
BpmI	CTGGAG	1 cut(s)	189
Bpu10I	CCTNAGC	4 cut(s)	261, 357, 378, 450
BpuEI	CTTGAG	1 cut(s)	303
BsaI	GGTCTC	2 cut(s)	221, 356
BsaJI	CCNNGG	2 cut(s)	231, 267
BsaWI	WCCGGW	2 cut(s)	178, 397
Bse118I	RCCGGY	1 cut(s)	5
Bse1I	ACTGG	8 cut(s)	56, 83, 206, 215, 302, 386, 425, 473
BseAI	TCCGGA	1 cut(s)	178
BseDI	CCNNGG	2 cut(s)	231, 267
BseMII	CTCAG	6 cut(s)	36, 252, 348, 369, 441, 477
BseNI	ACTGG	8 cut(s)	56, 83, 206, 215, 302, 386, 425, 473
BseRI	GAGGAG	1 cut(s)	374
BseXI	GCAGC	7 cut(s)	38, 76, 160, 290, 331, 334, 361
BsgI	GTGCAG	1 cut(s)	75
BshFI	GGCC	2 cut(s)	5, 266
BshNI	GGYRCC	1 cut(s)	166
BsiHKCI	CYCGRG	1 cut(s)	104
BsiSI	CCGG	3 cut(s)	6, 179, 398
BsmAI	GTCTC	5 cut(s)	35, 41, 101, 221, 356
BsnI	GGCC	2 cut(s)	5, 266
Bso31I	GGTCTC	2 cut(s)	221, 356
BsoBI	CYCGRG	1 cut(s)	104
Bsp13I	TCCGGA	1 cut(s)	178
BspACI	CCGC	1 cut(s)	392
BspANI	GGCC	2 cut(s)	5, 266
BspCNI	CTCAG	6 cut(s)	37, 253, 349, 370, 442, 478
BspEI	TCCGGA	1 cut(s)	178
BspLI	GGNNCC	5 cut(s)	168, 183, 384, 396, 444
BspMI	ACCTGC	1 cut(s)	106
BspQI	GCTCTTC	2 cut(s)	72, 330
BspT107I	GGYRCC	1 cut(s)	166
BspTNI	GGTCTC	2 cut(s)	221, 356
BsrFI	RCCGGY	1 cut(s)	5
BsrI	ACTGG	8 cut(s)	56, 83, 206, 215, 302, 386, 425, 473
BssAI	RCCGGY	1 cut(s)	5
BssECI	CCNNGG	2 cut(s)	231, 267
BssT1I	CCWWGG	2 cut(s)	231, 267
Bst6I	CTCTTC	3 cut(s)	72, 306, 330
BstAPI	GCANNNNNTGC	2 cut(s)	98, 173
BstC8I	GCNNGC	3 cut(s)	7, 342, 447
BstDEI	CTNAG	6 cut(s)	45, 261, 357, 378, 450, 486
BstEII	GGTNACC	1 cut(s)	454
BstMAI	GTCTC	5 cut(s)	35, 41, 101, 221, 356
BstMWI	GCNNNNNNNGC	5 cut(s)	26, 98, 173, 209, 353
BstPI	GGTNACC	1 cut(s)	454
BstV1I	GCAGC	7 cut(s)	38, 76, 160, 290, 331, 334, 361
BstXI	CCANNNNNNTGG	1 cut(s)	238
BsuRI	GGCC	2 cut(s)	5, 266
BtsIMutI	CAGTG	3 cut(s)	309, 366, 393
BveI	ACCTGC	1 cut(s)	106
Cac8I	GCNNGC	3 cut(s)	7, 342, 447
CaiI	CAGNNNCTG	1 cut(s)	89
Cfr10I	RCCGGY	1 cut(s)	5
DdeI	CTNAG	6 cut(s)	45, 261, 357, 378, 450, 486
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	3 cut(s)	72, 306, 330
EarI	CTCTTC	3 cut(s)	72, 306, 330
Eco130I	CCWWGG	2 cut(s)	231, 267
Eco31I	GGTCTC	2 cut(s)	221, 356
Eco57I	CTGAAG	2 cut(s)	207, 390
Eco88I	CYCGRG	1 cut(s)	104
Eco91I	GGTNACC	1 cut(s)	454
EcoO65I	GGTNACC	1 cut(s)	454
EcoT14I	CCWWGG	2 cut(s)	231, 267
ErhI	CCWWGG	2 cut(s)	231, 267
Fnu4HI	GCNGC	8 cut(s)	27, 90, 174, 279, 345, 348, 375, 393
Fsp4HI	GCNGC	8 cut(s)	27, 90, 174, 279, 345, 348, 375, 393
GluI	GCNGC	8 cut(s)	27, 90, 174, 279, 345, 348, 375, 393
GsuI	CTGGAG	1 cut(s)	189
HaeIII	GGCC	2 cut(s)	5, 266
HapII	CCGG	3 cut(s)	6, 179, 398
HpaII	CCGG	3 cut(s)	6, 179, 398
Hpy188III	TCNNGA	3 cut(s)	38, 179, 320
HpyAV	CCTTC	1 cut(s)	475
HpyCH4V	TGCA	3 cut(s)	20, 92, 212
HpyF10VI	GCNNNNNNNGC	5 cut(s)	26, 98, 173, 209, 353
HpyF3I	CTNAG	6 cut(s)	45, 261, 357, 378, 450, 486
Kpn2I	TCCGGA	1 cut(s)	178
KroI	GCCGGC	1 cut(s)	5
KroNI	GCCGGC	1 cut(s)	7
LguI	GCTCTTC	2 cut(s)	72, 330
LmnI	GCTCC	4 cut(s)	181, 208, 400, 442
Lsp1109I	GCAGC	7 cut(s)	38, 76, 160, 290, 331, 334, 361
MaeIII	GTNAC	2 cut(s)	64, 454
MboII	GAAGA	5 cut(s)	89, 134, 320, 323, 347
MroI	TCCGGA	1 cut(s)	178
MroNI	GCCGGC	1 cut(s)	5
MseI	TTAA	2 cut(s)	255, 327
MspA1I	CMGCKG	1 cut(s)	173
MspI	CCGG	3 cut(s)	6, 179, 398
MwoI	GCNNNNNNNGC	5 cut(s)	26, 98, 173, 209, 353
NaeI	GCCGGC	1 cut(s)	7
NgoMIV	GCCGGC	1 cut(s)	5
NlaIV	GGNNCC	5 cut(s)	168, 183, 384, 396, 444
NmuCI	GTSAC	1 cut(s)	64
PaqCI	CACCTGC	1 cut(s)	106
PciSI	GCTCTTC	2 cut(s)	72, 330
PdiI	GCCGGC	1 cut(s)	7
PkrI	GCNGC	8 cut(s)	28, 91, 175, 280, 346, 349, 376, 394
PspEI	GGTNACC	1 cut(s)	454
PspN4I	GGNNCC	5 cut(s)	168, 183, 384, 396, 444
PstNI	CAGNNNCTG	1 cut(s)	89
PvuII	CAGCTG	1 cut(s)	173
SapI	GCTCTTC	2 cut(s)	72, 330
SaqAI	TTAA	2 cut(s)	255, 327
SatI	GCNGC	8 cut(s)	27, 90, 174, 279, 345, 348, 375, 393
SmlI	CTYRAG	1 cut(s)	318
SmoI	CTYRAG	1 cut(s)	318
SsiI	CCGC	1 cut(s)	392
StyI	CCWWGG	2 cut(s)	231, 267
TaqI	TCGA	2 cut(s)	60, 405
TaqII	GACCGA	1 cut(s)	89
TauI	GCSGC	1 cut(s)	395
Tru1I	TTAA	2 cut(s)	255, 327
Tru9I	TTAA	2 cut(s)	255, 327
TscAI	CASTG	3 cut(s)	309, 373, 393
TseFI	GTSAC	1 cut(s)	64
TseI	GCWGC	7 cut(s)	26, 89, 173, 278, 344, 347, 374
Tsp45I	GTSAC	1 cut(s)	64
TspRI	CASTG	3 cut(s)	309, 373, 393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.