Rh5CG113900

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0012572
Physical Location & Seq
Forward (+)
9308148 .. 9311515
3368 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG113900.1

Sequence Viewer

Length: 1056 bp
ATGCCCCTATCCCCTGTCACGGAAGACCCTGATGTCCACGACCCGGACCCATCCATGCCCCTATCCCCTATCGTGGTCCGCCTGAAGCGGCACCGTTCGTCCTTGTTCAAAGACCCTAGCCACGACCAGAACCTAACCCCTGTCACGGAAGACTCTGATGTTGCGAAGCGGCCCCGTTCGTCCTTGTCCTCTGAACACCCTGATATCCAGGGCGGCAAGCACCAGGACCCGGACCCGGACCCGGCGAAGCCCTTAAAACCAGTAAGCCGTACGCTGAAGGAGATTCTGGATGAGGCCGGCCCGCTCGTCTCTAAAGAGCGAGAGCTCGAGTATGCTAAGATTTTGGCTAAGCGGAAGGAGGCCGAACCTATTACCAATCGCGTGACGGGGTTTGGTGGACCCATTAACGTAGTACAGAGTTATGAGGCCAAACCTATTACCAATCGCGTGATGGCCTCCTTCCCGGAGCCTCTTTTGGGTGGACGCATTAACGTAGTACAGAGTTATGGTCCTGATACACTAGCTGAAGCCGCAGCTGCTGGTGCTAGCAAGAGGACACTCCGTGATACACCTCTTTTTGGTGGATGCATTAACCTAGTAGAGAGTTATGGTCCTGATACAGTAGCTGAAACCGAAGCTGCTCGTGCTAGCAAGAGGACATTCCCTGATACGCCTTTTTGGAATACTCTTGATTCTCTGAGACGTAGAAGTGCAGAAAACCCAAAGTATTGTGGAAAAGAAGCATGGAAAGAATTCATCGAACGTCAAAGGAGTACATGGGGGCCGTGTCAGATTTGTTTGAAGGCTGATGACCATATGAGTTTGCACTGTCCATATCTCGACTATGTCCCGGAAGGCGCATCTGTTGGCCCTGGCGTTGAACTAGTTTGTAGGGGTTGTGGACTTAAGGACAAGCACCCTGGTATGAATTGGTCTAAATGTGCTATTCTCAAGTCGTGTTTCATTTGTGCATCAGACCACTGGGGTACTGATTGCCCGCGTGCTAAACAGCATAAAACGGTTCCATATAATCCCACTCCCTTTAGCGACCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

351

Amino Acids

38.77

Weight (kDa)

7.12

Isoelectric Point (pI)

46.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 32
AccB1I GGYRCC 1 cut(s) 90
AccBSI CCGCTC 1 cut(s) 304
AccII CGCG 3 cut(s) 381, 447, 1000
AciI CCGC 9 cut(s) 79, 88, 169, 213, 302, 352, 531, 998, 1051
AcsI RAATTY 1 cut(s) 752
AcuI CTGAAG 3 cut(s) 104, 296, 546
AdeI CACNNNGTG 1 cut(s) 563
AfaI GTAC 5 cut(s) 271, 414, 498, 775, 988
AfiI CCNNNNNNNGG 9 cut(s) 19, 43, 73, 145, 229, 235, 241, 476, 578
AflII CTTAAG 1 cut(s) 905
AgsI TTSAA 3 cut(s) 109, 802, 881
AhlI ACTAGT 1 cut(s) 883
AjnI CCWGG 4 cut(s) 207, 222, 871, 919
AluBI AGCT 5 cut(s) 325, 524, 536, 626, 638
AluI AGCT 5 cut(s) 325, 524, 536, 626, 638
Alw21I GWGCWC 1 cut(s) 327
Alw26I GTCTC 2 cut(s) 313, 694
AlwNI CAGNNNCTG 2 cut(s) 539, 626
Ama87I CYCGRG 1 cut(s) 326
AoxI GGCC 8 cut(s) 170, 294, 298, 360, 426, 453, 782, 868
ApeKI GCWGC 3 cut(s) 533, 536, 638
ApoI RAATTY 1 cut(s) 752
Asp700I GAANNNNTTC 1 cut(s) 752
AspLEI GCGC 1 cut(s) 860
AsuC2I CCSGG 6 cut(s) 44, 230, 236, 242, 464, 851
AsuNHI GCTAGC 2 cut(s) 545, 647
AvaI CYCGRG 1 cut(s) 326
AvaII GGWCC 8 cut(s) 46, 76, 226, 232, 238, 398, 509, 611
BanI GGYRCC 1 cut(s) 90
BanII GRGCYC 1 cut(s) 327
BauI CACGAG 1 cut(s) 642
BbsI GAAGAC 2 cut(s) 30, 156
Bbv12I GWGCWC 1 cut(s) 327
BbvI GCAGC 3 cut(s) 523, 545, 625
BccI CCATC 2 cut(s) 58, 445
BceAI ACGGC 2 cut(s) 252, 769
BciT130I CCWGG 4 cut(s) 209, 224, 873, 921
BcnI CCSGG 6 cut(s) 44, 230, 236, 242, 464, 851
BcoDI GTCTC 2 cut(s) 313, 694
BcuI ACTAGT 1 cut(s) 883
BfaI CTAG 6 cut(s) 117, 521, 546, 596, 648, 884
BfrI CTTAAG 1 cut(s) 905
BisI GCNGC 7 cut(s) 89, 170, 214, 531, 534, 537, 639
BlpI GCTNAGC 1 cut(s) 348
BlsI GCNGC 7 cut(s) 90, 171, 215, 532, 535, 538, 640
Bme18I GGWCC 8 cut(s) 46, 76, 226, 232, 238, 398, 509, 611
BmeT110I CYCGRG 1 cut(s) 326
BmrI ACTGGG 1 cut(s) 991
BmsI GCATC 3 cut(s) 575, 869, 980
BmtI GCTAGC 2 cut(s) 549, 651
BmuI ACTGGG 1 cut(s) 991
BpiI GAAGAC 2 cut(s) 30, 156
Bpu1102I GCTNAGC 1 cut(s) 348
BpuEI CTTGAG 1 cut(s) 935
BpuMI CCSGG 6 cut(s) 44, 230, 236, 242, 464, 851
BsaJI CCNNGG 3 cut(s) 208, 871, 919
Bsc4I CCNNNNNNNGG 9 cut(s) 19, 43, 73, 145, 229, 235, 241, 476, 578
Bse118I RCCGGY 1 cut(s) 296
Bse1I ACTGG 2 cut(s) 260, 986
BseBI CCWGG 4 cut(s) 209, 224, 873, 921
BseDI CCNNGG 3 cut(s) 208, 871, 919
BseGI GGATG 3 cut(s) 50, 295, 590
BseLI CCNNNNNNNGG 9 cut(s) 19, 43, 73, 145, 229, 235, 241, 476, 578
BseMII CTCAG 1 cut(s) 689
BseNI ACTGG 2 cut(s) 260, 986
BseXI GCAGC 3 cut(s) 523, 545, 625
BsgI GTGCAG 1 cut(s) 732
Bsh1236I CGCG 3 cut(s) 381, 447, 1000
Bsh1285I CGRYCG 1 cut(s) 1051
BshFI GGCC 8 cut(s) 172, 296, 300, 362, 428, 455, 784, 870
BshNI GGYRCC 1 cut(s) 90
BsiEI CGRYCG 1 cut(s) 1051
BsiHKAI GWGCWC 1 cut(s) 327
BsiHKCI CYCGRG 1 cut(s) 326
BsiSI CCGG 7 cut(s) 44, 230, 236, 242, 297, 464, 851
BsiWI CGTACG 1 cut(s) 269
BslFI GGGAC 1 cut(s) 833
BslI CCNNNNNNNGG 9 cut(s) 19, 43, 73, 145, 229, 235, 241, 476, 578
BsmAI GTCTC 2 cut(s) 313, 694
BsmBI CGTCTC 2 cut(s) 313, 694
BsmFI GGGAC 1 cut(s) 833
BsnI GGCC 8 cut(s) 172, 296, 300, 362, 428, 455, 784, 870
BsoBI CYCGRG 1 cut(s) 326
Bsp1286I GDGCHC 1 cut(s) 327
Bsp1720I GCTNAGC 1 cut(s) 348
BspACI CCGC 9 cut(s) 79, 88, 169, 213, 302, 352, 531, 998, 1051
BspANI GGCC 8 cut(s) 172, 296, 300, 362, 428, 455, 784, 870
BspCNI CTCAG 1 cut(s) 690
BspFNI CGCG 3 cut(s) 381, 447, 1000
BspOI GCTAGC 2 cut(s) 549, 651
BspT107I GGYRCC 1 cut(s) 90
BspTI CTTAAG 1 cut(s) 905
BsrBI CCGCTC 1 cut(s) 304
BsrFI RCCGGY 1 cut(s) 296
BsrI ACTGG 2 cut(s) 260, 986
BssAI RCCGGY 1 cut(s) 296
BssECI CCNNGG 3 cut(s) 208, 871, 919
BssSI CACGAG 1 cut(s) 642
Bst2BI CACGAG 1 cut(s) 642
Bst2UI CCWGG 4 cut(s) 209, 224, 873, 921
Bst4CI ACNGT 4 cut(s) 95, 622, 830, 1021
BstAFI CTTAAG 1 cut(s) 905
BstC8I GCNNGC 7 cut(s) 218, 298, 302, 547, 649, 998, 1002
BstDEI CTNAG 3 cut(s) 336, 348, 698
BstF5I GGATG 3 cut(s) 50, 295, 590
BstFNI CGCG 3 cut(s) 381, 447, 1000
BstHHI GCGC 1 cut(s) 860
BstMAI GTCTC 2 cut(s) 313, 694
BstMCI CGRYCG 1 cut(s) 1051
BstMWI GCNNNNNNNGC 4 cut(s) 530, 536, 542, 644
BstNI CCWGG 4 cut(s) 209, 224, 873, 921
BstUI CGCG 3 cut(s) 381, 447, 1000
BstV1I GCAGC 3 cut(s) 523, 545, 625
BstV2I GAAGAC 2 cut(s) 30, 156
BsuRI GGCC 8 cut(s) 172, 296, 300, 362, 428, 455, 784, 870
BtsCI GGATG 3 cut(s) 50, 295, 590
BtsIMutI CAGTG 2 cut(s) 826, 979
Cac8I GCNNGC 7 cut(s) 218, 298, 302, 547, 649, 998, 1002
CaiI CAGNNNCTG 2 cut(s) 539, 626
CfoI GCGC 1 cut(s) 860
Cfr10I RCCGGY 1 cut(s) 296
CseI GACGC 1 cut(s) 492
Csp6I GTAC 5 cut(s) 270, 413, 497, 774, 987
CviAII CATG 3 cut(s) 55, 744, 777
CviQI GTAC 5 cut(s) 270, 413, 497, 774, 987
DdeI CTNAG 3 cut(s) 336, 348, 698
DraIII CACNNNGTG 1 cut(s) 563
DrdI GACNNNNNNGTC 1 cut(s) 32
DseDI GACNNNNNNGTC 1 cut(s) 32
EciI GGCGGA 1 cut(s) 68
Ecl136II GAGCTC 1 cut(s) 325
Eco24I GRGCYC 1 cut(s) 327
Eco32I GATATC 1 cut(s) 205
Eco47I GGWCC 8 cut(s) 46, 76, 226, 232, 238, 398, 509, 611
Eco53kI GAGCTC 1 cut(s) 325
Eco57I CTGAAG 3 cut(s) 104, 296, 546
Eco88I CYCGRG 1 cut(s) 326
EcoICRI GAGCTC 1 cut(s) 325
EcoO109I RGGNCCY 1 cut(s) 226
EcoRI GAATTC 1 cut(s) 752
EcoRII CCWGG 4 cut(s) 207, 222, 871, 919
EcoRV GATATC 1 cut(s) 205
EcoT22I ATGCAT 1 cut(s) 590
EcoT38I GRGCYC 1 cut(s) 327
Esp3I CGTCTC 2 cut(s) 313, 694
FaeI CATG 3 cut(s) 58, 747, 780
FaqI GGGAC 1 cut(s) 833
FatI CATG 3 cut(s) 54, 743, 776
FauI CCCGC 2 cut(s) 309, 1005
FauNDI CATATG 1 cut(s) 816
Fnu4HI GCNGC 7 cut(s) 89, 170, 214, 531, 534, 537, 639
FokI GGATG 3 cut(s) 37, 302, 597
FriOI GRGCYC 1 cut(s) 327
FseI GGCCGGCC 1 cut(s) 300
Fsp4HI GCNGC 7 cut(s) 89, 170, 214, 531, 534, 537, 639
FspBI CTAG 6 cut(s) 117, 521, 546, 596, 648, 884
GlaI GCGC 1 cut(s) 859
GluI GCNGC 7 cut(s) 89, 170, 214, 531, 534, 537, 639
HaeIII GGCC 8 cut(s) 172, 296, 300, 362, 428, 455, 784, 870
HapII CCGG 7 cut(s) 44, 230, 236, 242, 297, 464, 851
HgaI GACGC 1 cut(s) 492
HhaI GCGC 1 cut(s) 860
Hin1II CATG 3 cut(s) 58, 747, 780
Hin6I GCGC 1 cut(s) 858
HinP1I GCGC 1 cut(s) 858
HinfI GANTC 3 cut(s) 152, 283, 692
HpaII CCGG 7 cut(s) 44, 230, 236, 242, 297, 464, 851
Hpy166II GTNNAC 4 cut(s) 37, 398, 482, 902
Hpy188I TCNGA 5 cut(s) 157, 193, 699, 792, 976
Hpy188III TCNNGA 5 cut(s) 287, 512, 614, 689, 839
Hpy8I GTNNAC 4 cut(s) 37, 398, 482, 902
HpyAV CCTTC 5 cut(s) 271, 349, 469, 796, 848
HpyCH4III ACNGT 4 cut(s) 95, 622, 830, 1021
HpyCH4IV ACGT 4 cut(s) 408, 492, 703, 763
HpyCH4V TGCA 4 cut(s) 588, 713, 826, 971
HpyF10VI GCNNNNNNNGC 4 cut(s) 530, 536, 542, 644
HpyF3I CTNAG 3 cut(s) 336, 348, 698
HpySE526I ACGT 4 cut(s) 408, 492, 703, 763
Hsp92II CATG 3 cut(s) 58, 747, 780
HspAI GCGC 1 cut(s) 858
KroI GCCGGC 1 cut(s) 296
KroNI GCCGGC 1 cut(s) 298
LmnI GCTCC 1 cut(s) 466
Lsp1109I GCAGC 3 cut(s) 523, 545, 625
LweI GCATC 3 cut(s) 575, 869, 980
MaeI CTAG 6 cut(s) 117, 521, 546, 596, 648, 884
MaeII ACGT 4 cut(s) 408, 492, 703, 763
MaeIII GTNAC 3 cut(s) 16, 142, 382
MbiI CCGCTC 1 cut(s) 304
MboII GAAGA 2 cut(s) 35, 161
MhlI GDGCHC 1 cut(s) 327
MluCI AATT 2 cut(s) 752, 928
MlyI GAGTC 1 cut(s) 146
MnlI CCTC 9 cut(s) 199, 286, 352, 418, 466, 480, 546, 582, 648
Mph1103I ATGCAT 1 cut(s) 590
MroNI GCCGGC 1 cut(s) 296
MroXI GAANNNNTTC 1 cut(s) 752
MseI TTAA 5 cut(s) 254, 405, 489, 591, 906
MspA1I CMGCKG 2 cut(s) 536, 1053
MspCI CTTAAG 1 cut(s) 905
MspI CCGG 7 cut(s) 44, 230, 236, 242, 297, 464, 851
MvaI CCWGG 4 cut(s) 209, 224, 873, 921
MvnI CGCG 3 cut(s) 381, 447, 1000
MwoI GCNNNNNNNGC 4 cut(s) 530, 536, 542, 644
NaeI GCCGGC 1 cut(s) 298
NciI CCSGG 6 cut(s) 44, 230, 236, 242, 464, 851
NdeI CATATG 1 cut(s) 816
NgoMIV GCCGGC 1 cut(s) 296
NheI GCTAGC 2 cut(s) 545, 647
NlaIII CATG 3 cut(s) 58, 747, 780
NmuCI GTSAC 3 cut(s) 16, 142, 382
NsiI ATGCAT 1 cut(s) 590
PaeR7I CTCGAG 1 cut(s) 326
PdiI GCCGGC 1 cut(s) 298
PdmI GAANNNNTTC 1 cut(s) 752
PfeI GAWTC 2 cut(s) 283, 692
Pfl23II CGTACG 1 cut(s) 269
PflFI GACNNNGTC 1 cut(s) 845
PfoI TCCNGGA 2 cut(s) 462, 849
PkrI GCNGC 7 cut(s) 90, 171, 215, 532, 535, 538, 640
PleI GAGTC 1 cut(s) 146
PpsI GAGTC 1 cut(s) 146
PpuMI RGGWCCY 1 cut(s) 226
Psp124BI GAGCTC 1 cut(s) 327
Psp5II RGGWCCY 1 cut(s) 226
Psp6I CCWGG 4 cut(s) 207, 222, 871, 919
PspGI CCWGG 4 cut(s) 207, 222, 871, 919
PspLI CGTACG 1 cut(s) 269
PspPPI RGGWCCY 1 cut(s) 226
PspXI VCTCGAGB 1 cut(s) 326
PstNI CAGNNNCTG 2 cut(s) 539, 626
PsyI GACNNNGTC 1 cut(s) 845
PvuII CAGCTG 1 cut(s) 536
RigI GGCCGGCC 1 cut(s) 300
RsaI GTAC 5 cut(s) 271, 414, 498, 775, 988
RsaNI GTAC 5 cut(s) 270, 413, 497, 774, 987
SacI GAGCTC 1 cut(s) 327
SaqAI TTAA 5 cut(s) 254, 405, 489, 591, 906
SatI GCNGC 7 cut(s) 89, 170, 214, 531, 534, 537, 639
SchI GAGTC 1 cut(s) 146
SduI GDGCHC 1 cut(s) 327
SfaNI GCATC 3 cut(s) 575, 869, 980
Sfr274I CTCGAG 1 cut(s) 326
SinI GGWCC 8 cut(s) 46, 76, 226, 232, 238, 398, 509, 611
SlaI CTCGAG 1 cut(s) 326
SmlI CTYRAG 3 cut(s) 326, 905, 950
SmoI CTYRAG 3 cut(s) 326, 905, 950
SpeI ACTAGT 1 cut(s) 883
Sse9I AATT 2 cut(s) 752, 928
SsiI CCGC 9 cut(s) 79, 88, 169, 213, 302, 352, 531, 998, 1051
SspMI CTAG 6 cut(s) 117, 521, 546, 596, 648, 884
SstI GAGCTC 1 cut(s) 327
TaaI ACNGT 4 cut(s) 95, 622, 830, 1021
TaiI ACGT 4 cut(s) 411, 495, 706, 766
TaqI TCGA 3 cut(s) 327, 759, 840
TasI AATT 2 cut(s) 752, 928
TatI WGTACW 3 cut(s) 412, 496, 773
TauI GCSGC 4 cut(s) 91, 172, 216, 533
TfiI GAWTC 2 cut(s) 283, 692
Tru1I TTAA 5 cut(s) 254, 405, 489, 591, 906
Tru9I TTAA 5 cut(s) 254, 405, 489, 591, 906
TscAI CASTG 2 cut(s) 833, 986
TseFI GTSAC 3 cut(s) 16, 142, 382
TseI GCWGC 3 cut(s) 533, 536, 638
Tsp45I GTSAC 3 cut(s) 16, 142, 382
TspDTI ATGAA 3 cut(s) 745, 941, 952
TspGWI ACGGA 3 cut(s) 35, 161, 551
TspRI CASTG 2 cut(s) 833, 986
Tth111I GACNNNGTC 1 cut(s) 845
Vha464I CTTAAG 1 cut(s) 905
VpaK11BI GGWCC 8 cut(s) 46, 76, 226, 232, 238, 398, 509, 611
XapI RAATTY 1 cut(s) 752
XcmI CCANNNNNNNNNTGG 1 cut(s) 448
XhoI CTCGAG 1 cut(s) 326
XmnI GAANNNNTTC 1 cut(s) 752
XspI CTAG 6 cut(s) 117, 521, 546, 596, 648, 884
Zsp2I ATGCAT 1 cut(s) 590
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.