Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0012572

Physical Location & Seq

Genomic Coordinates Forward (+)

10348490 .. 10350519

Gene Structure 2030 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032035

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGCCCCTATCCCCTGTCAAGGAAGACCCTGATGGCCCGAAGCGGCCCCGTTCGTCCTTGTTTGAAGACCCTAGCCAGGACCAGAACCTAACCCTAACCCCTGTCACGGAAGACCCTGTTGTCCACGACCCAACCATGCCCCTATCCCCTATCGTGGTCCGCCTGAAGCGGCACCGTTCTTCCTTGTTTGAAGATCCTAGCAAGGGAGGCAAGCACCAGGACCCGGACCCGGTCCAGCCCGCGAAGCCCTTAAAACCAGTAAGCCGTACGCTGAAGGAGATTCTCGATGAGTCCGGCCCGTACATGTCTAAAGAGCAAGAACTCGAGTATGCTATGATTTTTGCTAAGTCGAAGGAGGCCGAACCTATTACCAATCGCGTGATGGCCTCCATCCCGGAGCCTCTTTTTGGTGGACGCATTAACGTAGTACAGAGTTATGGGCCTGATACGCTAGCTGCAATGGAGTCCCTGAGACGTAGAAGGGCAGAAAAACCAAAGTATTATGGAGAAGCAGCATTGAACGAATACATCGAACGTCAAAAGAGTACATGGGGACCGTGTAAAATTTGTTTTAAGGCTGGTGACCATATTGGTTTTTACTGCCCATATCTTGAATATGTCCCGGAAGGCGCATCTGTTGGCCCTGGCGTTGAACTAGTTTGTAGGAATTGTGGACTTCCGGACCAGCACCTCCTTATTTCCTCCAGTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

238

Amino Acids

26.42

Weight (kDa)

6.01

Isoelectric Point (pI)

66.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012572)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g01201 FvH4_2g01202
rosa_chinensis	RchiOBHm_Chr5g0013591 RchiOBHm_Chr5g0013641
rosa_laevigata	RLG00000032033 RLG00000032035
rosa_roxburghii	Rroxscaffold_1G00062950 Rroxscaffold_1G00062970
rosa_rugosa	Rorug05G0011300 Rorug05G0011400
rosa_samantha	Rh5AG105900 Rh5AG106200 Rh5BG102400 Rh5CG113900 Rh5CG114200 Rh5DG100700 Rh5DG100900
rosa_wichuraiana	Rw5G009230 Rw5G009240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	119
AccB1I	GGYRCC	1 cut(s)	171
AccII	CGCG	2 cut(s)	242, 378
AccIII	TCCGGA	1 cut(s)	679
AciI	CCGC	4 cut(s)	43, 160, 169, 240
AclWI	GGATC	1 cut(s)	188
AcsI	RAATTY	1 cut(s)	564
AcuI	CTGAAG	2 cut(s)	185, 293
AfaI	GTAC	5 cut(s)	268, 302, 429, 547, 709
AfiI	CCNNNNNNNGG	8 cut(s)	19, 76, 106, 154, 203, 223, 229, 407
AflIII	ACRYGT	1 cut(s)	303
AgsI	TTSAA	5 cut(s)	65, 191, 520, 614, 653
AhlI	ACTAGT	1 cut(s)	655
AjnI	CCWGG	3 cut(s)	75, 216, 643
AluBI	AGCT	1 cut(s)	455
AluI	AGCT	1 cut(s)	455
Alw26I	GTCTC	1 cut(s)	466
AlwI	GGATC	1 cut(s)	188
Ama87I	CYCGRG	1 cut(s)	323
Aor13HI	TCCGGA	1 cut(s)	679
AoxI	GGCC	7 cut(s)	34, 44, 295, 357, 384, 440, 640
ApeKI	GCWGC	2 cut(s)	455, 512
ApoI	RAATTY	1 cut(s)	564
AspLEI	GCGC	1 cut(s)	632
AsuC2I	CCSGG	4 cut(s)	224, 230, 395, 623
AsuHPI	GGTGA	1 cut(s)	593
AsuNHI	GCTAGC	1 cut(s)	451
AvaI	CYCGRG	1 cut(s)	323
AvaII	GGWCC	7 cut(s)	79, 157, 220, 226, 232, 554, 682
BanI	GGYRCC	1 cut(s)	171
BbsI	GAAGAC	3 cut(s)	30, 72, 117
BbvI	GCAGC	2 cut(s)	442, 524
BccI	CCATC	3 cut(s)	26, 376, 398
BceAI	ACGGC	1 cut(s)	249
BciT130I	CCWGG	3 cut(s)	77, 218, 645
BcnI	CCSGG	4 cut(s)	224, 230, 395, 623
BcoDI	GTCTC	1 cut(s)	466
BcuI	ACTAGT	1 cut(s)	655
BfaI	CTAG	4 cut(s)	72, 198, 452, 656
BisI	GCNGC	4 cut(s)	44, 170, 456, 513
BlsI	GCNGC	4 cut(s)	45, 171, 457, 514
Bme1390I	CCNGG	7 cut(s)	77, 218, 224, 230, 395, 623, 645
Bme18I	GGWCC	7 cut(s)	79, 157, 220, 226, 232, 554, 682
BmeT110I	CYCGRG	1 cut(s)	323
BmiI	GGNNCC	6 cut(s)	47, 173, 222, 228, 399, 555
BmrFI	CCNGG	7 cut(s)	77, 218, 224, 230, 395, 623, 645
BmsI	GCATC	1 cut(s)	641
BmtI	GCTAGC	1 cut(s)	455
BpiI	GAAGAC	3 cut(s)	30, 72, 117
BpmI	CTGGAG	1 cut(s)	688
BpuMI	CCSGG	4 cut(s)	224, 230, 395, 623
BsaJI	CCNNGG	1 cut(s)	643
BsaWI	WCCGGW	1 cut(s)	679
Bsc4I	CCNNNNNNNGG	8 cut(s)	19, 76, 106, 154, 203, 223, 229, 407
Bse1I	ACTGG	2 cut(s)	257, 705
Bse3DI	GCAATG	1 cut(s)	465
BseAI	TCCGGA	1 cut(s)	679
BseBI	CCWGG	3 cut(s)	77, 218, 645
BseDI	CCNNGG	1 cut(s)	643
BseGI	GGATG	1 cut(s)	390
BseLI	CCNNNNNNNGG	8 cut(s)	19, 76, 106, 154, 203, 223, 229, 407
BseMI	GCAATG	1 cut(s)	465
BseMII	CTCAG	1 cut(s)	461
BseNI	ACTGG	2 cut(s)	257, 705
BseXI	GCAGC	2 cut(s)	442, 524
Bsh1236I	CGCG	2 cut(s)	242, 378
BshFI	GGCC	7 cut(s)	36, 46, 297, 359, 386, 442, 642
BshNI	GGYRCC	1 cut(s)	171
BsiHKCI	CYCGRG	1 cut(s)	323
BsiSI	CCGG	6 cut(s)	224, 230, 294, 395, 623, 680
BsiWI	CGTACG	1 cut(s)	266
BslFI	GGGAC	3 cut(s)	451, 567, 605
BslI	CCNNNNNNNGG	8 cut(s)	19, 76, 106, 154, 203, 223, 229, 407
BsmAI	GTCTC	1 cut(s)	466
BsmBI	CGTCTC	1 cut(s)	466
BsmFI	GGGAC	3 cut(s)	451, 567, 605
BsnI	GGCC	7 cut(s)	36, 46, 297, 359, 386, 442, 642
BsoBI	CYCGRG	1 cut(s)	323
Bsp13I	TCCGGA	1 cut(s)	679
Bsp143I	GATC	1 cut(s)	193
BspACI	CCGC	4 cut(s)	43, 160, 169, 240
BspANI	GGCC	7 cut(s)	36, 46, 297, 359, 386, 442, 642
BspCNI	CTCAG	1 cut(s)	462
BspEI	TCCGGA	1 cut(s)	679
BspFNI	CGCG	2 cut(s)	242, 378
BspLI	GGNNCC	6 cut(s)	47, 173, 222, 228, 399, 555
BspOI	GCTAGC	1 cut(s)	455
BspPI	GGATC	1 cut(s)	188
BspT107I	GGYRCC	1 cut(s)	171
BsrDI	GCAATG	1 cut(s)	465
BsrI	ACTGG	2 cut(s)	257, 705
BssECI	CCNNGG	1 cut(s)	643
BssMI	GATC	1 cut(s)	193
Bst2UI	CCWGG	3 cut(s)	77, 218, 645
Bst4CI	ACNGT	2 cut(s)	176, 558
BstC8I	GCNNGC	3 cut(s)	212, 240, 453
BstDEI	CTNAG	2 cut(s)	345, 470
BstEII	GGTNACC	1 cut(s)	581
BstF5I	GGATG	1 cut(s)	390
BstFNI	CGCG	2 cut(s)	242, 378
BstHHI	GCGC	1 cut(s)	632
BstKTI	GATC	1 cut(s)	196
BstMAI	GTCTC	1 cut(s)	466
BstMBI	GATC	1 cut(s)	193
BstMWI	GCNNNNNNNGC	3 cut(s)	207, 244, 448
BstNI	CCWGG	3 cut(s)	77, 218, 645
BstNSI	RCATGY	1 cut(s)	307
BstPI	GGTNACC	1 cut(s)	581
BstSCI	CCNGG	7 cut(s)	75, 216, 222, 228, 393, 621, 643
BstUI	CGCG	2 cut(s)	242, 378
BstV1I	GCAGC	2 cut(s)	442, 524
BstV2I	GAAGAC	3 cut(s)	30, 72, 117
BstX2I	RGATCY	1 cut(s)	193
BstYI	RGATCY	1 cut(s)	193
BsuRI	GGCC	7 cut(s)	36, 46, 297, 359, 386, 442, 642
BtsCI	GGATG	1 cut(s)	390
Cac8I	GCNNGC	3 cut(s)	212, 240, 453
CfoI	GCGC	1 cut(s)	632
CseI	GACGC	1 cut(s)	423
Csp6I	GTAC	5 cut(s)	267, 301, 428, 546, 708
CviAII	CATG	3 cut(s)	136, 304, 549
CviQI	GTAC	5 cut(s)	267, 301, 428, 546, 708
DdeI	CTNAG	2 cut(s)	345, 470
DpnI	GATC	1 cut(s)	195
DpnII	GATC	1 cut(s)	193
DrdI	GACNNNNNNGTC	1 cut(s)	119
DseDI	GACNNNNNNGTC	1 cut(s)	119
EciI	GGCGGA	1 cut(s)	149
Eco47I	GGWCC	7 cut(s)	79, 157, 220, 226, 232, 554, 682
Eco57I	CTGAAG	2 cut(s)	185, 293
Eco88I	CYCGRG	1 cut(s)	323
Eco91I	GGTNACC	1 cut(s)	581
EcoO109I	RGGNCCY	1 cut(s)	220
EcoO65I	GGTNACC	1 cut(s)	581
EcoRII	CCWGG	3 cut(s)	75, 216, 643
Esp3I	CGTCTC	1 cut(s)	466
FaeI	CATG	3 cut(s)	139, 307, 552
FaqI	GGGAC	3 cut(s)	451, 567, 605
FatI	CATG	3 cut(s)	135, 303, 548
FauI	CCCGC	1 cut(s)	247
Fnu4HI	GCNGC	4 cut(s)	44, 170, 456, 513
FokI	GGATG	1 cut(s)	377
Fsp4HI	GCNGC	4 cut(s)	44, 170, 456, 513
FspBI	CTAG	4 cut(s)	72, 198, 452, 656
GlaI	GCGC	1 cut(s)	631
GluI	GCNGC	4 cut(s)	44, 170, 456, 513
GsuI	CTGGAG	1 cut(s)	688
HaeIII	GGCC	7 cut(s)	36, 46, 297, 359, 386, 442, 642
HapII	CCGG	6 cut(s)	224, 230, 294, 395, 623, 680
HgaI	GACGC	1 cut(s)	423
HhaI	GCGC	1 cut(s)	632
Hin1II	CATG	3 cut(s)	139, 307, 552
Hin6I	GCGC	1 cut(s)	630
HinP1I	GCGC	1 cut(s)	630
HinfI	GANTC	3 cut(s)	280, 290, 464
HpaII	CCGG	6 cut(s)	224, 230, 294, 395, 623, 680
HphI	GGTGA	1 cut(s)	593
Hpy166II	GTNNAC	3 cut(s)	124, 413, 674
Hpy188III	TCNNGA	3 cut(s)	284, 611, 680
Hpy8I	GTNNAC	3 cut(s)	124, 413, 674
HpyAV	CCTTC	4 cut(s)	268, 346, 474, 620
HpyCH4III	ACNGT	2 cut(s)	176, 558
HpyCH4IV	ACGT	3 cut(s)	423, 475, 535
HpyCH4V	TGCA	1 cut(s)	458
HpyF10VI	GCNNNNNNNGC	3 cut(s)	207, 244, 448
HpyF3I	CTNAG	2 cut(s)	345, 470
HpySE526I	ACGT	3 cut(s)	423, 475, 535
Hsp92II	CATG	3 cut(s)	139, 307, 552
HspAI	GCGC	1 cut(s)	630
Kpn2I	TCCGGA	1 cut(s)	679
Kzo9I	GATC	1 cut(s)	193
LmnI	GCTCC	1 cut(s)	397
Lsp1109I	GCAGC	2 cut(s)	442, 524
LweI	GCATC	1 cut(s)	641
MaeI	CTAG	4 cut(s)	72, 198, 452, 656
MaeII	ACGT	3 cut(s)	423, 475, 535
MaeIII	GTNAC	2 cut(s)	103, 581
MalI	GATC	1 cut(s)	195
MboI	GATC	1 cut(s)	193
MboII	GAAGA	5 cut(s)	35, 77, 122, 171, 203
MflI	RGATCY	1 cut(s)	193
MluCI	AATT	2 cut(s)	564, 667
MlyI	GAGTC	2 cut(s)	299, 473
MnlI	CCTC	6 cut(s)	200, 349, 397, 411, 701, 712
MroI	TCCGGA	1 cut(s)	679
MseI	TTAA	3 cut(s)	251, 420, 573
MspI	CCGG	6 cut(s)	224, 230, 294, 395, 623, 680
MspR9I	CCNGG	7 cut(s)	77, 218, 224, 230, 395, 623, 645
MvaI	CCWGG	3 cut(s)	77, 218, 645
MvnI	CGCG	2 cut(s)	242, 378
MwoI	GCNNNNNNNGC	3 cut(s)	207, 244, 448
NciI	CCSGG	4 cut(s)	224, 230, 395, 623
NdeII	GATC	1 cut(s)	193
NheI	GCTAGC	1 cut(s)	451
NlaIII	CATG	3 cut(s)	139, 307, 552
NlaIV	GGNNCC	6 cut(s)	47, 173, 222, 228, 399, 555
NmuCI	GTSAC	2 cut(s)	103, 581
NspI	RCATGY	1 cut(s)	307
PaeR7I	CTCGAG	1 cut(s)	323
PciI	ACATGT	1 cut(s)	303
PcsI	WCGNNNNNNNCGW	1 cut(s)	528
PfeI	GAWTC	1 cut(s)	280
Pfl23II	CGTACG	1 cut(s)	266
PflFI	GACNNNGTC	1 cut(s)	230
PfoI	TCCNGGA	2 cut(s)	393, 621
PkrI	GCNGC	4 cut(s)	45, 171, 457, 514
PleI	GAGTC	2 cut(s)	298, 472
PpsI	GAGTC	2 cut(s)	298, 472
PpuMI	RGGWCCY	1 cut(s)	220
PscI	ACATGT	1 cut(s)	303
Psp5II	RGGWCCY	1 cut(s)	220
Psp6I	CCWGG	3 cut(s)	75, 216, 643
PspEI	GGTNACC	1 cut(s)	581
PspGI	CCWGG	3 cut(s)	75, 216, 643
PspLI	CGTACG	1 cut(s)	266
PspN4I	GGNNCC	6 cut(s)	47, 173, 222, 228, 399, 555
PspPPI	RGGWCCY	1 cut(s)	220
PspXI	VCTCGAGB	1 cut(s)	323
PsuI	RGATCY	1 cut(s)	193
PsyI	GACNNNGTC	1 cut(s)	230
RsaI	GTAC	5 cut(s)	268, 302, 429, 547, 709
RsaNI	GTAC	5 cut(s)	267, 301, 428, 546, 708
SaqAI	TTAA	3 cut(s)	251, 420, 573
SatI	GCNGC	4 cut(s)	44, 170, 456, 513
Sau3AI	GATC	1 cut(s)	193
SchI	GAGTC	2 cut(s)	299, 473
ScrFI	CCNGG	7 cut(s)	77, 218, 224, 230, 395, 623, 645
SetI	ASST	7 cut(s)	90, 367, 426, 457, 478, 538, 693
SfaNI	GCATC	1 cut(s)	641
Sfr274I	CTCGAG	1 cut(s)	323
SinI	GGWCC	7 cut(s)	79, 157, 220, 226, 232, 554, 682
SlaI	CTCGAG	1 cut(s)	323
SmlI	CTYRAG	1 cut(s)	323
SmoI	CTYRAG	1 cut(s)	323
SpeI	ACTAGT	1 cut(s)	655
Sse9I	AATT	2 cut(s)	564, 667
SsiI	CCGC	4 cut(s)	43, 160, 169, 240
SspMI	CTAG	4 cut(s)	72, 198, 452, 656
StyD4I	CCNGG	7 cut(s)	75, 216, 222, 228, 393, 621, 643
TaaI	ACNGT	2 cut(s)	176, 558
TaiI	ACGT	3 cut(s)	426, 478, 538
TaqI	TCGA	4 cut(s)	285, 324, 350, 531
TasI	AATT	2 cut(s)	564, 667
TatI	WGTACW	3 cut(s)	427, 545, 707
TauI	GCSGC	2 cut(s)	46, 172
TfiI	GAWTC	1 cut(s)	280
Tru1I	TTAA	3 cut(s)	251, 420, 573
Tru9I	TTAA	3 cut(s)	251, 420, 573
TseFI	GTSAC	2 cut(s)	103, 581
TseI	GCWGC	2 cut(s)	455, 512
Tsp45I	GTSAC	2 cut(s)	103, 581
TspGWI	ACGGA	1 cut(s)	122
Tth111I	GACNNNGTC	1 cut(s)	230
VpaK11BI	GGWCC	7 cut(s)	79, 157, 220, 226, 232, 554, 682
XapI	RAATTY	1 cut(s)	564
XceI	RCATGY	1 cut(s)	307
XcmI	CCANNNNNNNNNTGG	1 cut(s)	379
XhoI	CTCGAG	1 cut(s)	323
XspI	CTAG	4 cut(s)	72, 198, 452, 656

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.