RLG00000032033

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0012572
Physical Location & Seq
Forward (+)
10342418 .. 10345611
3194 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032033

Sequence Viewer

Length: 732 bp
ATGCCCCTATCCCCTGTCAAGGAAGACCCTGATGGCCCGAAGCGGCCCCGTTCGTCCATGTTTGAAGACCCTAGCCAGGACCAGAACCTAACCCTAACCCCTGTCACGGAAGACCCTGTTGTCCACGACCCGGACCCAGCCATGCCCCTATCCCCTATCGTGGTCCGCCTGAAGCGGCACCGTTCTTCCTTGTTTGAAGACCCTAGCAAGGTCCAGAACCTAACCCTAACCCCTGTCACGGAAGACCCTGATGTTGTGAAGCGGCCCCGTTCGTCCTTGTCCTCTGAAGACCCTGATATCCAGGGCGGCAAGCACCAGGACCCGGCGAAGCGCTTAAAACCAGTAAGCTGTACGCTGAAGGAGATTCTCGATGAGGCCGGCCCGCTCATCTCTAAAGAGCTAGAGCTCGAGTATGCTATGATTTTTGCTAAGTGCAAGGAGGCCGAACCTATTACCAATCGCGTGATGGCCTCCATCCCGGGGTTTGGTGGACCCATTAACTTAGTACAGAGTTATGAGGCCGAACCTATTACCAATCGCGCCTCCATCCCGGAGCCTCTTTTTGGTGGACGCAATAACGTAGTACAGAGTTATGGTCCTGATACGCTAGCTGAAGCCGCAGCTGCTCGTGCTAGCAAGAGGACACTCCCTGATACGCCTTTTTGGAATACTATTGGCTTTGATGGCCGTTCTGATTATATCTCCTTGTATCGTAAAAAACTTTCGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

244

Amino Acids

26.8

Weight (kDa)

5.27

Isoelectric Point (pI)

59.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 119
AccB1I GGYRCC 1 cut(s) 177
AccBSI CCGCTC 1 cut(s) 385
AccII CGCG 2 cut(s) 462, 540
AciI CCGC 7 cut(s) 43, 166, 175, 262, 306, 383, 618
AcoI YGGCCR 1 cut(s) 685
AcuI CTGAAG 4 cut(s) 191, 306, 377, 633
AfaI GTAC 3 cut(s) 352, 507, 585
AfeI AGCGCT 1 cut(s) 332
AgsI TTSAA 2 cut(s) 65, 197
AjnI CCWGG 3 cut(s) 75, 300, 315
AluBI AGCT 5 cut(s) 348, 400, 406, 611, 623
AluI AGCT 5 cut(s) 348, 400, 406, 611, 623
Alw21I GWGCWC 1 cut(s) 408
Ama87I CYCGRG 2 cut(s) 407, 478
Aor51HI AGCGCT 1 cut(s) 332
AoxI GGCC 9 cut(s) 34, 44, 263, 375, 379, 441, 468, 519, 685
ApeKI GCWGC 2 cut(s) 620, 623
AspLEI GCGC 2 cut(s) 333, 542
AsuC2I CCSGG 5 cut(s) 131, 323, 479, 480, 551
AsuNHI GCTAGC 2 cut(s) 607, 632
AvaI CYCGRG 2 cut(s) 407, 478
AvaII GGWCC 7 cut(s) 79, 133, 163, 211, 319, 491, 596
BanI GGYRCC 1 cut(s) 177
BanII GRGCYC 1 cut(s) 408
BauI CACGAG 1 cut(s) 627
BbsI GAAGAC 6 cut(s) 30, 72, 117, 204, 249, 294
Bbv12I GWGCWC 1 cut(s) 408
BbvI GCAGC 2 cut(s) 610, 632
BccI CCATC 5 cut(s) 26, 460, 482, 554, 677
BceAI ACGGC 1 cut(s) 672
BciT130I CCWGG 3 cut(s) 77, 302, 317
BcnI CCSGG 5 cut(s) 131, 323, 479, 480, 551
BfaI CTAG 5 cut(s) 72, 204, 401, 608, 633
BfoI RGCGCY 1 cut(s) 334
BisI GCNGC 7 cut(s) 44, 176, 263, 307, 618, 621, 624
BlsI GCNGC 7 cut(s) 45, 177, 264, 308, 619, 622, 625
Bme1390I CCNGG 8 cut(s) 77, 131, 302, 317, 323, 479, 480, 551
Bme18I GGWCC 7 cut(s) 79, 133, 163, 211, 319, 491, 596
BmeT110I CYCGRG 2 cut(s) 407, 478
BmiI GGNNCC 7 cut(s) 47, 135, 179, 266, 321, 493, 555
BmrFI CCNGG 8 cut(s) 77, 131, 302, 317, 323, 479, 480, 551
BmtI GCTAGC 2 cut(s) 611, 636
BpiI GAAGAC 6 cut(s) 30, 72, 117, 204, 249, 294
BpuMI CCSGG 5 cut(s) 131, 323, 479, 480, 551
BsaJI CCNNGG 3 cut(s) 301, 478, 479
Bse118I RCCGGY 1 cut(s) 377
Bse1I ACTGG 1 cut(s) 341
BseBI CCWGG 3 cut(s) 77, 302, 317
BseDI CCNNGG 3 cut(s) 301, 478, 479
BseGI GGATG 2 cut(s) 474, 546
BseNI ACTGG 1 cut(s) 341
BseXI GCAGC 2 cut(s) 610, 632
BseYI CCCAGC 1 cut(s) 136
Bsh1236I CGCG 2 cut(s) 462, 540
BshFI GGCC 9 cut(s) 36, 46, 265, 377, 381, 443, 470, 521, 687
BshNI GGYRCC 1 cut(s) 177
BsiHKAI GWGCWC 1 cut(s) 408
BsiHKCI CYCGRG 2 cut(s) 407, 478
BsiSI CCGG 5 cut(s) 131, 323, 378, 479, 551
BsnI GGCC 9 cut(s) 36, 46, 265, 377, 381, 443, 470, 521, 687
BsoBI CYCGRG 2 cut(s) 407, 478
Bsp1286I GDGCHC 1 cut(s) 408
BspACI CCGC 7 cut(s) 43, 166, 175, 262, 306, 383, 618
BspANI GGCC 9 cut(s) 36, 46, 265, 377, 381, 443, 470, 521, 687
BspFNI CGCG 2 cut(s) 462, 540
BspLI GGNNCC 7 cut(s) 47, 135, 179, 266, 321, 493, 555
BspOI GCTAGC 2 cut(s) 611, 636
BspT107I GGYRCC 1 cut(s) 177
BsrBI CCGCTC 1 cut(s) 385
BsrFI RCCGGY 1 cut(s) 377
BsrI ACTGG 1 cut(s) 341
BssAI RCCGGY 1 cut(s) 377
BssECI CCNNGG 3 cut(s) 301, 478, 479
BssSI CACGAG 1 cut(s) 627
Bst2BI CACGAG 1 cut(s) 627
Bst2UI CCWGG 3 cut(s) 77, 302, 317
Bst4CI ACNGT 1 cut(s) 182
BstC8I GCNNGC 5 cut(s) 311, 379, 383, 609, 634
BstDEI CTNAG 2 cut(s) 429, 502
BstF5I GGATG 2 cut(s) 474, 546
BstFNI CGCG 2 cut(s) 462, 540
BstH2I RGCGCY 1 cut(s) 334
BstHHI GCGC 2 cut(s) 333, 542
BstMWI GCNNNNNNNGC 4 cut(s) 617, 623, 629, 684
BstNI CCWGG 3 cut(s) 77, 302, 317
BstSCI CCNGG 8 cut(s) 75, 129, 300, 315, 321, 477, 478, 549
BstUI CGCG 2 cut(s) 462, 540
BstV1I GCAGC 2 cut(s) 610, 632
BstV2I GAAGAC 6 cut(s) 30, 72, 117, 204, 249, 294
BsuRI GGCC 9 cut(s) 36, 46, 265, 377, 381, 443, 470, 521, 687
BtsCI GGATG 2 cut(s) 474, 546
Cac8I GCNNGC 5 cut(s) 311, 379, 383, 609, 634
CfoI GCGC 2 cut(s) 333, 542
Cfr10I RCCGGY 1 cut(s) 377
Cfr9I CCCGGG 1 cut(s) 478
CseI GACGC 1 cut(s) 579
Csp6I GTAC 3 cut(s) 351, 506, 584
CviAII CATG 2 cut(s) 58, 142
CviQI GTAC 3 cut(s) 351, 506, 584
DdeI CTNAG 2 cut(s) 429, 502
DrdI GACNNNNNNGTC 1 cut(s) 119
DseDI GACNNNNNNGTC 1 cut(s) 119
EaeI YGGCCR 1 cut(s) 685
EciI GGCGGA 1 cut(s) 155
Ecl136II GAGCTC 1 cut(s) 406
Eco24I GRGCYC 1 cut(s) 408
Eco32I GATATC 1 cut(s) 298
Eco47I GGWCC 7 cut(s) 79, 133, 163, 211, 319, 491, 596
Eco47III AGCGCT 1 cut(s) 332
Eco53kI GAGCTC 1 cut(s) 406
Eco57I CTGAAG 4 cut(s) 191, 306, 377, 633
Eco88I CYCGRG 2 cut(s) 407, 478
EcoICRI GAGCTC 1 cut(s) 406
EcoO109I RGGNCCY 1 cut(s) 319
EcoRII CCWGG 3 cut(s) 75, 300, 315
EcoRV GATATC 1 cut(s) 298
EcoT38I GRGCYC 1 cut(s) 408
FaeI CATG 2 cut(s) 61, 145
FaiI YATR 7 cut(s) 59, 143, 414, 419, 516, 594, 699
FatI CATG 2 cut(s) 57, 141
FauI CCCGC 1 cut(s) 390
Fnu4HI GCNGC 7 cut(s) 44, 176, 263, 307, 618, 621, 624
FokI GGATG 2 cut(s) 461, 533
FriOI GRGCYC 1 cut(s) 408
FseI GGCCGGCC 1 cut(s) 381
Fsp4HI GCNGC 7 cut(s) 44, 176, 263, 307, 618, 621, 624
FspBI CTAG 5 cut(s) 72, 204, 401, 608, 633
GlaI GCGC 2 cut(s) 332, 541
GluI GCNGC 7 cut(s) 44, 176, 263, 307, 618, 621, 624
GsaI CCCAGC 1 cut(s) 140
HaeII RGCGCY 1 cut(s) 334
HaeIII GGCC 9 cut(s) 36, 46, 265, 377, 381, 443, 470, 521, 687
HapII CCGG 5 cut(s) 131, 323, 378, 479, 551
HgaI GACGC 1 cut(s) 579
HhaI GCGC 2 cut(s) 333, 542
Hin1II CATG 2 cut(s) 61, 145
Hin6I GCGC 2 cut(s) 331, 540
HinP1I GCGC 2 cut(s) 331, 540
HinfI GANTC 1 cut(s) 364
HpaII CCGG 5 cut(s) 131, 323, 378, 479, 551
Hpy166II GTNNAC 3 cut(s) 124, 491, 569
Hpy188I TCNGA 3 cut(s) 286, 694, 727
Hpy188III TCNNGA 3 cut(s) 214, 368, 599
Hpy8I GTNNAC 3 cut(s) 124, 491, 569
HpyAV CCTTC 1 cut(s) 352
HpyCH4III ACNGT 1 cut(s) 182
HpyCH4IV ACGT 1 cut(s) 579
HpyCH4V TGCA 1 cut(s) 435
HpyF10VI GCNNNNNNNGC 4 cut(s) 617, 623, 629, 684
HpyF3I CTNAG 2 cut(s) 429, 502
HpySE526I ACGT 1 cut(s) 579
Hsp92II CATG 2 cut(s) 61, 145
HspAI GCGC 2 cut(s) 331, 540
KroI GCCGGC 1 cut(s) 377
KroNI GCCGGC 1 cut(s) 379
LmnI GCTCC 1 cut(s) 553
Lsp1109I GCAGC 2 cut(s) 610, 632
MaeI CTAG 5 cut(s) 72, 204, 401, 608, 633
MaeII ACGT 1 cut(s) 579
MaeIII GTNAC 2 cut(s) 103, 235
MbiI CCGCTC 1 cut(s) 385
MboII GAAGA 7 cut(s) 35, 77, 122, 177, 209, 254, 299
MhlI GDGCHC 1 cut(s) 408
MnlI CCTC 8 cut(s) 292, 367, 433, 481, 511, 553, 567, 633
MroNI GCCGGC 1 cut(s) 377
MseI TTAA 2 cut(s) 335, 498
MspA1I CMGCKG 1 cut(s) 623
MspI CCGG 5 cut(s) 131, 323, 378, 479, 551
MspR9I CCNGG 8 cut(s) 77, 131, 302, 317, 323, 479, 480, 551
MvaI CCWGG 3 cut(s) 77, 302, 317
MvnI CGCG 2 cut(s) 462, 540
MwoI GCNNNNNNNGC 4 cut(s) 617, 623, 629, 684
NaeI GCCGGC 1 cut(s) 379
NciI CCSGG 5 cut(s) 131, 323, 479, 480, 551
NgoMIV GCCGGC 1 cut(s) 377
NheI GCTAGC 2 cut(s) 607, 632
NlaIII CATG 2 cut(s) 61, 145
NlaIV GGNNCC 7 cut(s) 47, 135, 179, 266, 321, 493, 555
NmuCI GTSAC 2 cut(s) 103, 235
PaeR7I CTCGAG 1 cut(s) 407
PdiI GCCGGC 1 cut(s) 379
PfeI GAWTC 1 cut(s) 364
PfoI TCCNGGA 1 cut(s) 549
PkrI GCNGC 7 cut(s) 45, 177, 264, 308, 619, 622, 625
PpuMI RGGWCCY 1 cut(s) 319
Psp124BI GAGCTC 1 cut(s) 408
Psp5II RGGWCCY 1 cut(s) 319
Psp6I CCWGG 3 cut(s) 75, 300, 315
PspFI CCCAGC 1 cut(s) 136
PspGI CCWGG 3 cut(s) 75, 300, 315
PspN4I GGNNCC 7 cut(s) 47, 135, 179, 266, 321, 493, 555
PspPPI RGGWCCY 1 cut(s) 319
PspXI VCTCGAGB 1 cut(s) 407
PvuII CAGCTG 1 cut(s) 623
RigI GGCCGGCC 1 cut(s) 381
RsaI GTAC 3 cut(s) 352, 507, 585
RsaNI GTAC 3 cut(s) 351, 506, 584
SacI GAGCTC 1 cut(s) 408
SaqAI TTAA 2 cut(s) 335, 498
SatI GCNGC 7 cut(s) 44, 176, 263, 307, 618, 621, 624
ScrFI CCNGG 8 cut(s) 77, 131, 302, 317, 323, 479, 480, 551
SduI GDGCHC 1 cut(s) 408
Sfr274I CTCGAG 1 cut(s) 407
SinI GGWCC 7 cut(s) 79, 133, 163, 211, 319, 491, 596
SlaI CTCGAG 1 cut(s) 407
SmaI CCCGGG 1 cut(s) 480
SmlI CTYRAG 1 cut(s) 407
SmoI CTYRAG 1 cut(s) 407
SsiI CCGC 7 cut(s) 43, 166, 175, 262, 306, 383, 618
SspMI CTAG 5 cut(s) 72, 204, 401, 608, 633
SstI GAGCTC 1 cut(s) 408
StyD4I CCNGG 8 cut(s) 75, 129, 300, 315, 321, 477, 478, 549
TaaI ACNGT 1 cut(s) 182
TaiI ACGT 1 cut(s) 582
TaqI TCGA 2 cut(s) 369, 408
TatI WGTACW 2 cut(s) 505, 583
TauI GCSGC 5 cut(s) 46, 178, 265, 309, 620
TfiI GAWTC 1 cut(s) 364
Tru1I TTAA 2 cut(s) 335, 498
Tru9I TTAA 2 cut(s) 335, 498
TseFI GTSAC 2 cut(s) 103, 235
TseI GCWGC 2 cut(s) 620, 623
Tsp45I GTSAC 2 cut(s) 103, 235
TspGWI ACGGA 2 cut(s) 122, 254
TspMI CCCGGG 1 cut(s) 478
VpaK11BI GGWCC 7 cut(s) 79, 133, 163, 211, 319, 491, 596
XcmI CCANNNNNNNNNTGG 1 cut(s) 463
XhoI CTCGAG 1 cut(s) 407
XmaI CCCGGG 1 cut(s) 478
XspI CTAG 5 cut(s) 72, 204, 401, 608, 633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.