Rroxscaffold_1G00062950

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0012572
Physical Location & Seq
Reverse (-)
84975257 .. 84979195
3939 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00062950.1

Sequence Viewer

Length: 996 bp
ATGCCCCTATCCCCTATCGTGGTCCGCCTGAAGCGGCACCGTTCGTCCTTGTTCGAAGACCCTAGCCACGACCAGAACCTAACCCCTGTCACGGAAGACTCTGATGTTGCGAAGCGGCCCCGTTCGTCCTTGTCCCCTGAACACCCTGATATCCAGGGCGGCAAGCACCAGGACCCGGACCCGGCGAAGCCCTTAAAACCAGTAAGCCGTACGCTCAAGGAGATTCTGGATGAGGCCGGTCCGCTCATCTCTAAAGAGCTAGAGCTCGAGTATGCTATGATTTTTGCTAAGTCGAAGGAGGCCGAACCTATTACCAATCGCGTGATGGCCTCCATCCCGGGGTTTGGTGGACCCATTAACGTTGTACAGAGTTGTGAGACCGAACCTATTACCAATCGCGTGATGGCCTCCATCCCGGAGCCTCTTTGTGGTGGACGCATTGACGTACTACAGAGTTATGGTCCTGATACGCTAGCTGAAGCCGCAGCTGCTGGTGCTAGCAAGAGGACACTCCGTGATACACCTCTTTTTGGTGGACGCATTAACGCAGTACAGAGTTATGGTCCTGATACGCTAGCTGAAGCCGCAGCTGCTGGTCCTATCCCTGATACACCTTTTTGGAATACTATTGATTCTCTGAGACGTAGAAGTGCAGAAAACCCAAAGTATTGTGGAAAAGAAGCATGGAAAGAATTCATCGAACGTCAAAGGAGTACATGGGGGCCGTGTAAGATTTGTTTGAAGGCTGATGACCATATGAGTTTGCACTGCCCATATCTCGACTATGTCCCGGAAGGCGCATCTGTTGGCCCTGGCGTTGAACTAGTTTGTAGGGGTTGTGGACTTAAGGACAAGCACCCTGGTATGAATTGGTCTAAACGTGCTATTCTCAAGTCGTGTTTCATTTGTGCATCAGACCACTGGGGTACCGATTGCCCGCGTGCTAAACAGCATAAAACGGTTCCATATAATCCCTTTCCCTTTAGCGACCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

331

Amino Acids

36.38

Weight (kDa)

7.09

Isoelectric Point (pI)

49.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 926
AccB1I GGYRCC 2 cut(s) 36, 926
AccBSI CCGCTC 1 cut(s) 244
AccII CGCG 3 cut(s) 321, 399, 940
AciI CCGC 9 cut(s) 25, 34, 115, 159, 242, 483, 585, 938, 991
AclI AACGTT 1 cut(s) 360
AcsI RAATTY 1 cut(s) 692
AcuI CTGAAG 3 cut(s) 50, 498, 600
AdeI CACNNNGTG 1 cut(s) 515
AfaI GTAC 6 cut(s) 211, 366, 447, 552, 715, 928
AfiI CCNNNNNNNGG 8 cut(s) 19, 91, 175, 181, 339, 344, 428, 530
AflII CTTAAG 1 cut(s) 845
AgsI TTSAA 2 cut(s) 742, 821
AhlI ACTAGT 1 cut(s) 823
AjnI CCWGG 4 cut(s) 153, 168, 811, 859
AluBI AGCT 6 cut(s) 259, 265, 476, 488, 578, 590
AluI AGCT 6 cut(s) 259, 265, 476, 488, 578, 590
Alw21I GWGCWC 1 cut(s) 267
Alw26I GTCTC 2 cut(s) 371, 634
AlwNI CAGNNNCTG 2 cut(s) 491, 593
Ama87I CYCGRG 2 cut(s) 266, 337
AoxI GGCC 7 cut(s) 116, 234, 300, 327, 405, 722, 808
ApeKI GCWGC 4 cut(s) 485, 488, 587, 590
ApoI RAATTY 1 cut(s) 692
Asp700I GAANNNNTTC 1 cut(s) 692
Asp718I GGTACC 1 cut(s) 926
AspLEI GCGC 1 cut(s) 800
AsuC2I CCSGG 6 cut(s) 176, 182, 338, 339, 416, 791
AsuII TTCGAA 1 cut(s) 54
AsuNHI GCTAGC 3 cut(s) 472, 497, 574
AvaI CYCGRG 2 cut(s) 266, 337
AvaII GGWCC 8 cut(s) 22, 172, 178, 239, 350, 461, 563, 596
BaeI ACNNNNGTAYC 2 cut(s) 910, 943
BanI GGYRCC 2 cut(s) 36, 926
BanII GRGCYC 1 cut(s) 267
BbsI GAAGAC 2 cut(s) 63, 102
Bbv12I GWGCWC 1 cut(s) 267
BbvI GCAGC 4 cut(s) 475, 497, 577, 599
BccI CCATC 4 cut(s) 319, 341, 397, 419
BceAI ACGGC 2 cut(s) 192, 709
BciT130I CCWGG 4 cut(s) 155, 170, 813, 861
BcnI CCSGG 6 cut(s) 176, 182, 338, 339, 416, 791
BcoDI GTCTC 2 cut(s) 371, 634
BcuI ACTAGT 1 cut(s) 823
BfaI CTAG 6 cut(s) 63, 260, 473, 498, 575, 824
BfmI CTRYAG 1 cut(s) 449
BfrI CTTAAG 1 cut(s) 845
BisI GCNGC 9 cut(s) 35, 116, 160, 483, 486, 489, 585, 588, 591
BlsI GCNGC 9 cut(s) 36, 117, 161, 484, 487, 490, 586, 589, 592
Bme18I GGWCC 8 cut(s) 22, 172, 178, 239, 350, 461, 563, 596
BmeT110I CYCGRG 2 cut(s) 266, 337
BmiI GGNNCC 9 cut(s) 38, 119, 174, 180, 352, 420, 723, 928, 963
BmrI ACTGGG 1 cut(s) 931
BmsI GCATC 2 cut(s) 809, 920
BmtI GCTAGC 3 cut(s) 476, 501, 578
BmuI ACTGGG 1 cut(s) 931
BpiI GAAGAC 2 cut(s) 63, 102
Bpu14I TTCGAA 1 cut(s) 54
BpuEI CTTGAG 2 cut(s) 200, 875
BpuMI CCSGG 6 cut(s) 176, 182, 338, 339, 416, 791
BsaI GGTCTC 1 cut(s) 371
BsaJI CCNNGG 5 cut(s) 154, 337, 338, 811, 859
Bsc4I CCNNNNNNNGG 8 cut(s) 19, 91, 175, 181, 339, 344, 428, 530
Bse118I RCCGGY 1 cut(s) 236
Bse1I ACTGG 2 cut(s) 200, 926
BseBI CCWGG 4 cut(s) 155, 170, 813, 861
BseDI CCNNGG 5 cut(s) 154, 337, 338, 811, 859
BseGI GGATG 3 cut(s) 235, 333, 411
BseLI CCNNNNNNNGG 8 cut(s) 19, 91, 175, 181, 339, 344, 428, 530
BseMII CTCAG 1 cut(s) 629
BseNI ACTGG 2 cut(s) 200, 926
BseXI GCAGC 4 cut(s) 475, 497, 577, 599
BsgI GTGCAG 1 cut(s) 672
Bsh1236I CGCG 3 cut(s) 321, 399, 940
Bsh1285I CGRYCG 1 cut(s) 991
BshFI GGCC 7 cut(s) 118, 236, 302, 329, 407, 724, 810
BshNI GGYRCC 2 cut(s) 36, 926
BsiEI CGRYCG 1 cut(s) 991
BsiHKAI GWGCWC 1 cut(s) 267
BsiHKCI CYCGRG 2 cut(s) 266, 337
BsiSI CCGG 6 cut(s) 176, 182, 237, 338, 416, 791
BsiWI CGTACG 1 cut(s) 209
BslFI GGGAC 2 cut(s) 118, 773
BslI CCNNNNNNNGG 8 cut(s) 19, 91, 175, 181, 339, 344, 428, 530
BsmAI GTCTC 2 cut(s) 371, 634
BsmBI CGTCTC 1 cut(s) 634
BsmFI GGGAC 2 cut(s) 118, 773
BsnI GGCC 7 cut(s) 118, 236, 302, 329, 407, 724, 810
Bso31I GGTCTC 1 cut(s) 371
BsoBI CYCGRG 2 cut(s) 266, 337
Bsp119I TTCGAA 1 cut(s) 54
Bsp1286I GDGCHC 1 cut(s) 267
Bsp1407I TGTACA 1 cut(s) 364
BspACI CCGC 9 cut(s) 25, 34, 115, 159, 242, 483, 585, 938, 991
BspANI GGCC 7 cut(s) 118, 236, 302, 329, 407, 724, 810
BspCNI CTCAG 1 cut(s) 630
BspFNI CGCG 3 cut(s) 321, 399, 940
BspLI GGNNCC 9 cut(s) 38, 119, 174, 180, 352, 420, 723, 928, 963
BspOI GCTAGC 3 cut(s) 476, 501, 578
BspT104I TTCGAA 1 cut(s) 54
BspT107I GGYRCC 2 cut(s) 36, 926
BspTI CTTAAG 1 cut(s) 845
BspTNI GGTCTC 1 cut(s) 371
BsrBI CCGCTC 1 cut(s) 244
BsrFI RCCGGY 1 cut(s) 236
BsrGI TGTACA 1 cut(s) 364
BsrI ACTGG 2 cut(s) 200, 926
BssAI RCCGGY 1 cut(s) 236
BssECI CCNNGG 5 cut(s) 154, 337, 338, 811, 859
Bst2UI CCWGG 4 cut(s) 155, 170, 813, 861
Bst4CI ACNGT 2 cut(s) 41, 961
BstAFI CTTAAG 1 cut(s) 845
BstAUI TGTACA 1 cut(s) 364
BstBI TTCGAA 1 cut(s) 54
BstC8I GCNNGC 6 cut(s) 164, 474, 499, 576, 938, 942
BstDEI CTNAG 2 cut(s) 288, 638
BstF5I GGATG 3 cut(s) 235, 333, 411
BstFNI CGCG 3 cut(s) 321, 399, 940
BstHHI GCGC 1 cut(s) 800
BstMAI GTCTC 2 cut(s) 371, 634
BstMCI CGRYCG 1 cut(s) 991
BstMWI GCNNNNNNNGC 5 cut(s) 482, 488, 494, 584, 590
BstNI CCWGG 4 cut(s) 155, 170, 813, 861
BstSFI CTRYAG 1 cut(s) 449
BstUI CGCG 3 cut(s) 321, 399, 940
BstV1I GCAGC 4 cut(s) 475, 497, 577, 599
BstV2I GAAGAC 2 cut(s) 63, 102
BsuRI GGCC 7 cut(s) 118, 236, 302, 329, 407, 724, 810
BtsCI GGATG 3 cut(s) 235, 333, 411
BtsI GCAGTG 1 cut(s) 766
BtsIMutI CAGTG 2 cut(s) 766, 919
Cac8I GCNNGC 6 cut(s) 164, 474, 499, 576, 938, 942
CaiI CAGNNNCTG 2 cut(s) 491, 593
CfoI GCGC 1 cut(s) 800
Cfr10I RCCGGY 1 cut(s) 236
Cfr9I CCCGGG 1 cut(s) 337
CpoI CGGWCCG 1 cut(s) 239
CseI GACGC 2 cut(s) 444, 546
Csp6I GTAC 6 cut(s) 210, 365, 446, 551, 714, 927
CspI CGGWCCG 1 cut(s) 239
CviAII CATG 2 cut(s) 684, 717
CviQI GTAC 6 cut(s) 210, 365, 446, 551, 714, 927
DdeI CTNAG 2 cut(s) 288, 638
DraIII CACNNNGTG 1 cut(s) 515
EciI GGCGGA 1 cut(s) 14
Ecl136II GAGCTC 1 cut(s) 265
Eco24I GRGCYC 1 cut(s) 267
Eco31I GGTCTC 1 cut(s) 371
Eco32I GATATC 1 cut(s) 151
Eco47I GGWCC 8 cut(s) 22, 172, 178, 239, 350, 461, 563, 596
Eco53kI GAGCTC 1 cut(s) 265
Eco57I CTGAAG 3 cut(s) 50, 498, 600
Eco88I CYCGRG 2 cut(s) 266, 337
EcoICRI GAGCTC 1 cut(s) 265
EcoO109I RGGNCCY 1 cut(s) 172
EcoRI GAATTC 1 cut(s) 692
EcoRII CCWGG 4 cut(s) 153, 168, 811, 859
EcoRV GATATC 1 cut(s) 151
EcoT38I GRGCYC 1 cut(s) 267
Esp3I CGTCTC 1 cut(s) 634
FaeI CATG 2 cut(s) 687, 720
FaqI GGGAC 2 cut(s) 118, 773
FatI CATG 2 cut(s) 683, 716
FauI CCCGC 1 cut(s) 945
FauNDI CATATG 1 cut(s) 756
Fnu4HI GCNGC 9 cut(s) 35, 116, 160, 483, 486, 489, 585, 588, 591
FokI GGATG 3 cut(s) 242, 320, 398
FriOI GRGCYC 1 cut(s) 267
Fsp4HI GCNGC 9 cut(s) 35, 116, 160, 483, 486, 489, 585, 588, 591
FspBI CTAG 6 cut(s) 63, 260, 473, 498, 575, 824
GlaI GCGC 1 cut(s) 799
GluI GCNGC 9 cut(s) 35, 116, 160, 483, 486, 489, 585, 588, 591
HaeIII GGCC 7 cut(s) 118, 236, 302, 329, 407, 724, 810
HapII CCGG 6 cut(s) 176, 182, 237, 338, 416, 791
HgaI GACGC 2 cut(s) 444, 546
HhaI GCGC 1 cut(s) 800
Hin1II CATG 2 cut(s) 687, 720
Hin6I GCGC 1 cut(s) 798
HinP1I GCGC 1 cut(s) 798
HinfI GANTC 3 cut(s) 98, 223, 632
HpaII CCGG 6 cut(s) 176, 182, 237, 338, 416, 791
Hpy166II GTNNAC 4 cut(s) 350, 434, 536, 842
Hpy188I TCNGA 3 cut(s) 103, 639, 916
Hpy188III TCNNGA 4 cut(s) 227, 464, 566, 779
Hpy8I GTNNAC 4 cut(s) 350, 434, 536, 842
HpyAV CCTTC 3 cut(s) 289, 736, 788
HpyCH4III ACNGT 2 cut(s) 41, 961
HpyCH4IV ACGT 5 cut(s) 360, 444, 643, 703, 880
HpyCH4V TGCA 3 cut(s) 653, 766, 911
HpyF10VI GCNNNNNNNGC 5 cut(s) 482, 488, 494, 584, 590
HpyF3I CTNAG 2 cut(s) 288, 638
HpySE526I ACGT 5 cut(s) 360, 444, 643, 703, 880
Hsp92II CATG 2 cut(s) 687, 720
HspAI GCGC 1 cut(s) 798
KpnI GGTACC 1 cut(s) 930
LmnI GCTCC 1 cut(s) 418
Lsp1109I GCAGC 4 cut(s) 475, 497, 577, 599
LweI GCATC 2 cut(s) 809, 920
MaeI CTAG 6 cut(s) 63, 260, 473, 498, 575, 824
MaeII ACGT 5 cut(s) 360, 444, 643, 703, 880
MaeIII GTNAC 1 cut(s) 88
MbiI CCGCTC 1 cut(s) 244
MboII GAAGA 2 cut(s) 68, 107
MhlI GDGCHC 1 cut(s) 267
MluCI AATT 2 cut(s) 692, 868
MlyI GAGTC 1 cut(s) 92
MnlI CCTC 7 cut(s) 226, 292, 340, 418, 432, 498, 534
MroXI GAANNNNTTC 1 cut(s) 692
MseI TTAA 4 cut(s) 194, 357, 543, 846
MspA1I CMGCKG 3 cut(s) 488, 590, 993
MspCI CTTAAG 1 cut(s) 845
MspI CCGG 6 cut(s) 176, 182, 237, 338, 416, 791
MvaI CCWGG 4 cut(s) 155, 170, 813, 861
MvnI CGCG 3 cut(s) 321, 399, 940
MwoI GCNNNNNNNGC 5 cut(s) 482, 488, 494, 584, 590
NciI CCSGG 6 cut(s) 176, 182, 338, 339, 416, 791
NdeI CATATG 1 cut(s) 756
NheI GCTAGC 3 cut(s) 472, 497, 574
NlaIII CATG 2 cut(s) 687, 720
NlaIV GGNNCC 9 cut(s) 38, 119, 174, 180, 352, 420, 723, 928, 963
NmuCI GTSAC 1 cut(s) 88
NspV TTCGAA 1 cut(s) 54
PaeR7I CTCGAG 1 cut(s) 266
PdmI GAANNNNTTC 1 cut(s) 692
PfeI GAWTC 2 cut(s) 223, 632
Pfl23II CGTACG 1 cut(s) 209
PflFI GACNNNGTC 1 cut(s) 785
PfoI TCCNGGA 2 cut(s) 414, 789
PkrI GCNGC 9 cut(s) 36, 117, 161, 484, 487, 490, 586, 589, 592
PleI GAGTC 1 cut(s) 92
PpsI GAGTC 1 cut(s) 92
PpuMI RGGWCCY 1 cut(s) 172
Psp124BI GAGCTC 1 cut(s) 267
Psp1406I AACGTT 1 cut(s) 360
Psp5II RGGWCCY 1 cut(s) 172
Psp6I CCWGG 4 cut(s) 153, 168, 811, 859
PspGI CCWGG 4 cut(s) 153, 168, 811, 859
PspLI CGTACG 1 cut(s) 209
PspN4I GGNNCC 9 cut(s) 38, 119, 174, 180, 352, 420, 723, 928, 963
PspPPI RGGWCCY 1 cut(s) 172
PspXI VCTCGAGB 1 cut(s) 266
PstNI CAGNNNCTG 2 cut(s) 491, 593
PsyI GACNNNGTC 1 cut(s) 785
PvuII CAGCTG 2 cut(s) 488, 590
RsaI GTAC 6 cut(s) 211, 366, 447, 552, 715, 928
RsaNI GTAC 6 cut(s) 210, 365, 446, 551, 714, 927
Rsr2I CGGWCCG 1 cut(s) 239
RsrII CGGWCCG 1 cut(s) 239
SacI GAGCTC 1 cut(s) 267
SaqAI TTAA 4 cut(s) 194, 357, 543, 846
SatI GCNGC 9 cut(s) 35, 116, 160, 483, 486, 489, 585, 588, 591
SchI GAGTC 1 cut(s) 92
SduI GDGCHC 1 cut(s) 267
SfaNI GCATC 2 cut(s) 809, 920
SfcI CTRYAG 1 cut(s) 449
Sfr274I CTCGAG 1 cut(s) 266
SfuI TTCGAA 1 cut(s) 54
SinI GGWCC 8 cut(s) 22, 172, 178, 239, 350, 461, 563, 596
SlaI CTCGAG 1 cut(s) 266
SmaI CCCGGG 1 cut(s) 339
SmlI CTYRAG 4 cut(s) 215, 266, 845, 890
SmoI CTYRAG 4 cut(s) 215, 266, 845, 890
SpeI ACTAGT 1 cut(s) 823
Sse9I AATT 2 cut(s) 692, 868
SsiI CCGC 9 cut(s) 25, 34, 115, 159, 242, 483, 585, 938, 991
SspMI CTAG 6 cut(s) 63, 260, 473, 498, 575, 824
SstI GAGCTC 1 cut(s) 267
TaaI ACNGT 2 cut(s) 41, 961
TaiI ACGT 5 cut(s) 363, 447, 646, 706, 883
TaqI TCGA 5 cut(s) 54, 267, 293, 699, 780
TaqII GACCGA 1 cut(s) 395
TasI AATT 2 cut(s) 692, 868
TatI WGTACW 3 cut(s) 364, 550, 713
TauI GCSGC 5 cut(s) 37, 118, 162, 485, 587
TfiI GAWTC 2 cut(s) 223, 632
Tru1I TTAA 4 cut(s) 194, 357, 543, 846
Tru9I TTAA 4 cut(s) 194, 357, 543, 846
TscAI CASTG 2 cut(s) 773, 926
TseFI GTSAC 1 cut(s) 88
TseI GCWGC 4 cut(s) 485, 488, 587, 590
Tsp45I GTSAC 1 cut(s) 88
TspDTI ATGAA 3 cut(s) 685, 881, 892
TspGWI ACGGA 2 cut(s) 107, 503
TspMI CCCGGG 1 cut(s) 337
TspRI CASTG 2 cut(s) 773, 926
Tth111I GACNNNGTC 1 cut(s) 785
Vha464I CTTAAG 1 cut(s) 845
VpaK11BI GGWCC 8 cut(s) 22, 172, 178, 239, 350, 461, 563, 596
XapI RAATTY 1 cut(s) 692
XcmI CCANNNNNNNNNTGG 2 cut(s) 322, 400
XhoI CTCGAG 1 cut(s) 266
XmaI CCCGGG 1 cut(s) 337
XmnI GAANNNNTTC 1 cut(s) 692
XspI CTAG 6 cut(s) 63, 260, 473, 498, 575, 824
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.