Rw5G009240

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0012572
Physical Location & Seq
Forward (+)
9924305 .. 9926419
2115 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G009240.1

Sequence Viewer

Length: 774 bp
ATGCCCCTATCCCCTATCGTGGTCCGCCTGAAGCGGCACCATTCGTCCTTGTTCGAAGACCGTATACATGACCAGAACCTAACCCCTGTCACGGAAGACTCTGATGTTGTGAAGCGGCCCCGTTCGTCCTTGTCCTCTGAAGACCCTGATGTCCAGGGCGGCCAGCACCAGAACCCGGACCCGGTCCAGCCCGTGAAGCCCTCAGAACCAGTAAGCCGTACGCTGAAGGAGATTCTCGATGAGTGCGGCCCGAACATGTCTAAAGAGCAAGAGCTCGAGTATGCTATGCTTTTTGCTAAGTGGAAAGAGGCCGAACCTATTACCAATCGCGTGATGGCCTCCATCCCAGAGCCTCTTTTTGGTGGACGCATTAACGTAGTACAGAGTTATGGTCCTGATACGCTAGCTGCAGCAATGGATTCTCGAAGACAAAGAAGGGCAGAAAACCCAAAGTATTATGGAGAAGCAGCATTGAACGAATATATCGAACGTCAAAAGAGTACATGGGGGCCGTGTGAGATTTGTTTTAAGGCTGGTGACCATATTAGTTTGTACTGCCCATATCGTGACTATGTCCCGGAAGGCGCATCTGTTGGCCCTGGCGTTGAACTAGTTTGTCGGAATTGTGGACTTCCGGACCAGCACCCTGGTGCTAAACGTGCTATTCGCAAGTCGTGTTTCATTTGTGCATCAGACCACTGGGGTACCGATTGCCCGCGCGCCGAACAGCATAAAACGGTTCCATATAATCCCTTTCCCTTCAGCGACCGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

257

Amino Acids

28.95

Weight (kDa)

6.08

Isoelectric Point (pI)

57.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 149
Acc65I GGTACC 1 cut(s) 704
AccB1I GGYRCC 2 cut(s) 36, 704
AccI GTMKAC 1 cut(s) 64
AccII CGCG 3 cut(s) 330, 718, 720
AccIII TCCGGA 1 cut(s) 634
AciI CCGC 7 cut(s) 25, 34, 115, 159, 246, 716, 769
AcoI YGGCCR 1 cut(s) 160
AcuI CTGAAG 4 cut(s) 50, 159, 245, 745
AfaI GTAC 5 cut(s) 220, 381, 502, 554, 706
AfiI CCNNNNNNNGG 5 cut(s) 19, 91, 175, 181, 359
AflIII ACRYGT 1 cut(s) 255
AgsI TTSAA 2 cut(s) 475, 608
AhlI ACTAGT 1 cut(s) 610
AjnI CCWGG 3 cut(s) 153, 598, 646
AleI CACNNNNGTG 1 cut(s) 648
AluBI AGCT 2 cut(s) 274, 407
AluI AGCT 2 cut(s) 274, 407
Alw21I GWGCWC 1 cut(s) 276
Ama87I CYCGRG 1 cut(s) 275
Aor13HI TCCGGA 1 cut(s) 634
AoxI GGCC 7 cut(s) 116, 160, 247, 309, 336, 509, 595
ApeKI GCWGC 3 cut(s) 407, 410, 467
Asp718I GGTACC 1 cut(s) 704
AspLEI GCGC 3 cut(s) 587, 720, 722
AspS9I GGNCC 9 cut(s) 22, 117, 178, 184, 248, 392, 509, 596, 637
AsuC2I CCSGG 3 cut(s) 176, 182, 578
AsuHPI GGTGA 1 cut(s) 548
AsuII TTCGAA 1 cut(s) 54
AsuNHI GCTAGC 1 cut(s) 403
AvaI CYCGRG 1 cut(s) 275
AvaII GGWCC 5 cut(s) 22, 178, 184, 392, 637
BaeI ACNNNNGTAYC 2 cut(s) 688, 721
BanI GGYRCC 2 cut(s) 36, 704
BanII GRGCYC 1 cut(s) 276
BarI GAAGNNNNNNTAC 2 cut(s) 48, 80
BbsI GAAGAC 4 cut(s) 63, 102, 147, 433
Bbv12I GWGCWC 1 cut(s) 276
BbvI GCAGC 3 cut(s) 394, 422, 479
BccI CCATC 2 cut(s) 328, 350
BceAI ACGGC 2 cut(s) 201, 496
BciT130I CCWGG 3 cut(s) 155, 600, 648
BcnI CCSGG 3 cut(s) 176, 182, 578
BcuI ACTAGT 1 cut(s) 610
BfaI CTAG 2 cut(s) 404, 611
BfmI CTRYAG 1 cut(s) 408
BisI GCNGC 7 cut(s) 35, 116, 160, 247, 408, 411, 468
BlsI GCNGC 7 cut(s) 36, 117, 161, 248, 409, 412, 469
Bme1390I CCNGG 6 cut(s) 155, 176, 182, 578, 600, 648
Bme18I GGWCC 5 cut(s) 22, 178, 184, 392, 637
BmeT110I CYCGRG 1 cut(s) 275
BmgT120I GGNCC 9 cut(s) 22, 117, 178, 184, 248, 392, 509, 596, 637
BmiI GGNNCC 6 cut(s) 38, 119, 180, 510, 706, 741
BmrFI CCNGG 6 cut(s) 155, 176, 182, 578, 600, 648
BmrI ACTGGG 1 cut(s) 709
BmsI GCATC 2 cut(s) 596, 698
BmtI GCTAGC 1 cut(s) 407
BmuI ACTGGG 1 cut(s) 709
BpiI GAAGAC 4 cut(s) 63, 102, 147, 433
Bpu14I TTCGAA 1 cut(s) 54
BpuMI CCSGG 3 cut(s) 176, 182, 578
BsaJI CCNNGG 3 cut(s) 154, 598, 646
BsaWI WCCGGW 1 cut(s) 634
Bsc4I CCNNNNNNNGG 5 cut(s) 19, 91, 175, 181, 359
Bse1I ACTGG 2 cut(s) 209, 704
Bse3DI GCAATG 1 cut(s) 420
BseAI TCCGGA 1 cut(s) 634
BseBI CCWGG 3 cut(s) 155, 600, 648
BseDI CCNNGG 3 cut(s) 154, 598, 646
BseGI GGATG 1 cut(s) 342
BseLI CCNNNNNNNGG 5 cut(s) 19, 91, 175, 181, 359
BseMI GCAATG 1 cut(s) 420
BseMII CTCAG 1 cut(s) 216
BseNI ACTGG 2 cut(s) 209, 704
BsePI GCGCGC 1 cut(s) 718
BseXI GCAGC 3 cut(s) 394, 422, 479
Bsh1236I CGCG 3 cut(s) 330, 718, 720
Bsh1285I CGRYCG 1 cut(s) 769
BshFI GGCC 7 cut(s) 118, 162, 249, 311, 338, 511, 597
BshNI GGYRCC 2 cut(s) 36, 704
BsiEI CGRYCG 1 cut(s) 769
BsiHKAI GWGCWC 1 cut(s) 276
BsiHKCI CYCGRG 1 cut(s) 275
BsiSI CCGG 4 cut(s) 176, 182, 578, 635
BsiWI CGTACG 1 cut(s) 218
BslFI GGGAC 1 cut(s) 560
BslI CCNNNNNNNGG 5 cut(s) 19, 91, 175, 181, 359
BsmFI GGGAC 1 cut(s) 560
BsnI GGCC 7 cut(s) 118, 162, 249, 311, 338, 511, 597
BsoBI CYCGRG 1 cut(s) 275
Bsp119I TTCGAA 1 cut(s) 54
Bsp1286I GDGCHC 1 cut(s) 276
Bsp13I TCCGGA 1 cut(s) 634
BspACI CCGC 7 cut(s) 25, 34, 115, 159, 246, 716, 769
BspANI GGCC 7 cut(s) 118, 162, 249, 311, 338, 511, 597
BspCNI CTCAG 1 cut(s) 215
BspEI TCCGGA 1 cut(s) 634
BspFNI CGCG 3 cut(s) 330, 718, 720
BspLI GGNNCC 6 cut(s) 38, 119, 180, 510, 706, 741
BspMAI CTGCAG 1 cut(s) 412
BspOI GCTAGC 1 cut(s) 407
BspT104I TTCGAA 1 cut(s) 54
BspT107I GGYRCC 2 cut(s) 36, 704
BsrDI GCAATG 1 cut(s) 420
BsrI ACTGG 2 cut(s) 209, 704
BssECI CCNNGG 3 cut(s) 154, 598, 646
BssHII GCGCGC 1 cut(s) 718
BssNAI GTATAC 1 cut(s) 65
Bst1107I GTATAC 1 cut(s) 65
Bst2UI CCWGG 3 cut(s) 155, 600, 648
Bst4CI ACNGT 2 cut(s) 62, 739
BstBI TTCGAA 1 cut(s) 54
BstC8I GCNNGC 4 cut(s) 164, 405, 716, 720
BstDEI CTNAG 2 cut(s) 202, 297
BstEII GGTNACC 1 cut(s) 536
BstF5I GGATG 1 cut(s) 342
BstFNI CGCG 3 cut(s) 330, 718, 720
BstHHI GCGC 3 cut(s) 587, 720, 722
BstMCI CGRYCG 1 cut(s) 769
BstMWI GCNNNNNNNGC 2 cut(s) 196, 659
BstNI CCWGG 3 cut(s) 155, 600, 648
BstNSI RCATGY 1 cut(s) 259
BstPI GGTNACC 1 cut(s) 536
BstSCI CCNGG 6 cut(s) 153, 174, 180, 576, 598, 646
BstSFI CTRYAG 1 cut(s) 408
BstUI CGCG 3 cut(s) 330, 718, 720
BstV1I GCAGC 3 cut(s) 394, 422, 479
BstV2I GAAGAC 4 cut(s) 63, 102, 147, 433
BstXI CCANNNNNNTGG 1 cut(s) 647
BstZ17I GTATAC 1 cut(s) 65
BsuRI GGCC 7 cut(s) 118, 162, 249, 311, 338, 511, 597
BtsCI GGATG 1 cut(s) 342
BtsIMutI CAGTG 1 cut(s) 697
Cac8I GCNNGC 4 cut(s) 164, 405, 716, 720
CfoI GCGC 3 cut(s) 587, 720, 722
Cfr13I GGNCC 9 cut(s) 22, 117, 178, 184, 248, 392, 509, 596, 637
CseI GACGC 1 cut(s) 375
Csp6I GTAC 5 cut(s) 219, 380, 501, 553, 705
CviAII CATG 3 cut(s) 68, 256, 504
CviQI GTAC 5 cut(s) 219, 380, 501, 553, 705
DdeI CTNAG 2 cut(s) 202, 297
DrdI GACNNNNNNGTC 1 cut(s) 149
DseDI GACNNNNNNGTC 1 cut(s) 149
EaeI YGGCCR 1 cut(s) 160
EciI GGCGGA 1 cut(s) 14
Ecl136II GAGCTC 1 cut(s) 274
Eco24I GRGCYC 1 cut(s) 276
Eco47I GGWCC 5 cut(s) 22, 178, 184, 392, 637
Eco53kI GAGCTC 1 cut(s) 274
Eco57I CTGAAG 4 cut(s) 50, 159, 245, 745
Eco88I CYCGRG 1 cut(s) 275
Eco91I GGTNACC 1 cut(s) 536
EcoICRI GAGCTC 1 cut(s) 274
EcoO65I GGTNACC 1 cut(s) 536
EcoRII CCWGG 3 cut(s) 153, 598, 646
EcoT38I GRGCYC 1 cut(s) 276
FaeI CATG 3 cut(s) 71, 259, 507
FaqI GGGAC 1 cut(s) 560
FatI CATG 3 cut(s) 67, 255, 503
FauI CCCGC 1 cut(s) 723
FblI GTMKAC 1 cut(s) 64
Fnu4HI GCNGC 7 cut(s) 35, 116, 160, 247, 408, 411, 468
FokI GGATG 1 cut(s) 329
FriOI GRGCYC 1 cut(s) 276
Fsp4HI GCNGC 7 cut(s) 35, 116, 160, 247, 408, 411, 468
FspBI CTAG 2 cut(s) 404, 611
GlaI GCGC 3 cut(s) 586, 719, 721
GluI GCNGC 7 cut(s) 35, 116, 160, 247, 408, 411, 468
HaeIII GGCC 7 cut(s) 118, 162, 249, 311, 338, 511, 597
HapII CCGG 4 cut(s) 176, 182, 578, 635
HgaI GACGC 1 cut(s) 375
HhaI GCGC 3 cut(s) 587, 720, 722
Hin1II CATG 3 cut(s) 71, 259, 507
Hin6I GCGC 3 cut(s) 585, 718, 720
HinP1I GCGC 3 cut(s) 585, 718, 720
HinfI GANTC 3 cut(s) 98, 232, 419
HpaII CCGG 4 cut(s) 176, 182, 578, 635
HphI GGTGA 1 cut(s) 548
Hpy166II GTNNAC 3 cut(s) 65, 365, 629
Hpy188I TCNGA 5 cut(s) 103, 139, 205, 621, 694
Hpy188III TCNNGA 5 cut(s) 236, 395, 423, 566, 635
Hpy8I GTNNAC 3 cut(s) 65, 365, 629
HpyAV CCTTC 4 cut(s) 220, 429, 575, 769
HpyCH4III ACNGT 2 cut(s) 62, 739
HpyCH4IV ACGT 3 cut(s) 375, 490, 658
HpyCH4V TGCA 2 cut(s) 410, 689
HpyF10VI GCNNNNNNNGC 2 cut(s) 196, 659
HpyF3I CTNAG 2 cut(s) 202, 297
HpySE526I ACGT 3 cut(s) 375, 490, 658
Hsp92II CATG 3 cut(s) 71, 259, 507
HspAI GCGC 3 cut(s) 585, 718, 720
Kpn2I TCCGGA 1 cut(s) 634
KpnI GGTACC 1 cut(s) 708
Lsp1109I GCAGC 3 cut(s) 394, 422, 479
LweI GCATC 2 cut(s) 596, 698
MaeI CTAG 2 cut(s) 404, 611
MaeII ACGT 3 cut(s) 375, 490, 658
MaeIII GTNAC 3 cut(s) 88, 536, 566
MboII GAAGA 4 cut(s) 68, 107, 152, 438
MhlI GDGCHC 1 cut(s) 276
MluCI AATT 1 cut(s) 622
MlyI GAGTC 1 cut(s) 92
MmeI TCCRAC 1 cut(s) 599
MnlI CCTC 5 cut(s) 145, 211, 301, 349, 363
MroI TCCGGA 1 cut(s) 634
MseI TTAA 2 cut(s) 372, 528
MslI CAYNNNNRTG 1 cut(s) 648
MspI CCGG 4 cut(s) 176, 182, 578, 635
MspR9I CCNGG 6 cut(s) 155, 176, 182, 578, 600, 648
MvaI CCWGG 3 cut(s) 155, 600, 648
MvnI CGCG 3 cut(s) 330, 718, 720
MwoI GCNNNNNNNGC 2 cut(s) 196, 659
NciI CCSGG 3 cut(s) 176, 182, 578
NheI GCTAGC 1 cut(s) 403
NlaIII CATG 3 cut(s) 71, 259, 507
NlaIV GGNNCC 6 cut(s) 38, 119, 180, 510, 706, 741
NmuCI GTSAC 3 cut(s) 88, 536, 566
NspI RCATGY 1 cut(s) 259
NspV TTCGAA 1 cut(s) 54
OliI CACNNNNGTG 1 cut(s) 648
PaeR7I CTCGAG 1 cut(s) 275
PauI GCGCGC 1 cut(s) 718
PciI ACATGT 1 cut(s) 255
PcsI WCGNNNNNNNCGW 1 cut(s) 483
PfeI GAWTC 2 cut(s) 232, 419
Pfl23II CGTACG 1 cut(s) 218
PflFI GACNNNGTC 2 cut(s) 182, 572
PfoI TCCNGGA 1 cut(s) 576
PkrI GCNGC 7 cut(s) 36, 117, 161, 248, 409, 412, 469
PleI GAGTC 1 cut(s) 92
PpsI GAGTC 1 cut(s) 92
PscI ACATGT 1 cut(s) 255
Psp124BI GAGCTC 1 cut(s) 276
Psp6I CCWGG 3 cut(s) 153, 598, 646
PspEI GGTNACC 1 cut(s) 536
PspGI CCWGG 3 cut(s) 153, 598, 646
PspLI CGTACG 1 cut(s) 218
PspN4I GGNNCC 6 cut(s) 38, 119, 180, 510, 706, 741
PspPI GGNCC 9 cut(s) 22, 117, 178, 184, 248, 392, 509, 596, 637
PspXI VCTCGAGB 1 cut(s) 275
PstI CTGCAG 1 cut(s) 412
PsyI GACNNNGTC 2 cut(s) 182, 572
PteI GCGCGC 1 cut(s) 718
RsaI GTAC 5 cut(s) 220, 381, 502, 554, 706
RsaNI GTAC 5 cut(s) 219, 380, 501, 553, 705
RseI CAYNNNNRTG 1 cut(s) 648
SacI GAGCTC 1 cut(s) 276
SaqAI TTAA 2 cut(s) 372, 528
SatI GCNGC 7 cut(s) 35, 116, 160, 247, 408, 411, 468
Sau96I GGNCC 9 cut(s) 22, 117, 178, 184, 248, 392, 509, 596, 637
SchI GAGTC 1 cut(s) 92
ScrFI CCNGG 6 cut(s) 155, 176, 182, 578, 600, 648
SduI GDGCHC 1 cut(s) 276
SetI ASST 7 cut(s) 81, 276, 319, 378, 409, 493, 661
SfaNI GCATC 2 cut(s) 596, 698
SfcI CTRYAG 1 cut(s) 408
Sfr274I CTCGAG 1 cut(s) 275
SfuI TTCGAA 1 cut(s) 54
SinI GGWCC 5 cut(s) 22, 178, 184, 392, 637
SlaI CTCGAG 1 cut(s) 275
SmiMI CAYNNNNRTG 1 cut(s) 648
SmlI CTYRAG 1 cut(s) 275
SmoI CTYRAG 1 cut(s) 275
SpeI ACTAGT 1 cut(s) 610
Sse9I AATT 1 cut(s) 622
SsiI CCGC 7 cut(s) 25, 34, 115, 159, 246, 716, 769
SspMI CTAG 2 cut(s) 404, 611
SstI GAGCTC 1 cut(s) 276
StyD4I CCNGG 6 cut(s) 153, 174, 180, 576, 598, 646
TaaI ACNGT 2 cut(s) 62, 739
TaiI ACGT 3 cut(s) 378, 493, 661
TaqI TCGA 5 cut(s) 54, 237, 276, 424, 486
TasI AATT 1 cut(s) 622
TatI WGTACW 3 cut(s) 379, 500, 552
TauI GCSGC 4 cut(s) 37, 118, 162, 249
TfiI GAWTC 2 cut(s) 232, 419
Tru1I TTAA 2 cut(s) 372, 528
Tru9I TTAA 2 cut(s) 372, 528
TscAI CASTG 1 cut(s) 704
TseFI GTSAC 3 cut(s) 88, 536, 566
TseI GCWGC 3 cut(s) 407, 410, 467
Tsp45I GTSAC 3 cut(s) 88, 536, 566
TspDTI ATGAA 1 cut(s) 670
TspGWI ACGGA 1 cut(s) 107
TspRI CASTG 1 cut(s) 704
Tth111I GACNNNGTC 2 cut(s) 182, 572
VpaK11BI GGWCC 5 cut(s) 22, 178, 184, 392, 637
XceI RCATGY 1 cut(s) 259
XcmI CCANNNNNNNNNTGG 1 cut(s) 331
XhoI CTCGAG 1 cut(s) 275
XmiI GTMKAC 1 cut(s) 64
XspI CTAG 2 cut(s) 404, 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.