Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0012572

Physical Location & Seq

Genomic Coordinates Reverse (-)

84995860 .. 84998121

Gene Structure 2262 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00062970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGCCCCTATCCCCTGTCAAGGAAGACCCTGATGGCCCGAAGCGGGCCCGTTCGTCCTTGTTTGAAGACCCTAGCCAGGACCAGAACCTAACCCTAACCCCTGTCATGGAAGACCCTGTTGTCCACGACCCGGACCCAGCCATGCCCCTATCCCCTATCGTGGTCCGCCTGAAGCGGTACCGTTCTTCCTTGTTTGAAGACCCTAGCAAGGTCCAGAACCTAACCCTAACCCCTGTCACGGAAGACCCTGATGTTGTGAAGCGGCCCCGTTCGTTCTTGTCCTCTGAAGACCCTGATGTCCAGGGAGGCAAGCACCAGGACCCGGACCCGGTCCAGCCCGCGAAGCCCTTAAAACCAGTAAGCTGTACGCTGAAGGAGATTCTCGATGAGTCCGGCCCGTACATGTTTAAAGAGCAAGAGCTCGAGTATGCTATGCTTTTTGCTAAGTGGAAGGCAATGGAGTCTCGGAGACGTAGAAGGGCAGAAAACCCAAAGTATTGTGGAGAAGCAGCATTGAACGAATACATCGAACGTCAAAAGAGTACATGGGGGCCGTGTGAGATTTGTTTTAAGGCTGGTGACCATATTAGTTTGTACTGCCCATATCGTGACTATGTCCCGGAAGGCGCAACTACTGTTGGCCCTGGCGTTGAACTAGTTTGTAGGAATTGTGGACTTGCGGACCAGCACCCTGGTGCTAAACGTGCTATTCGCAAGTCGTGTTTCATTTGTGCTTCGGACCACTGGGGTACCGATTGCCCGCGTGCTAAACAGCATAAAACGGTTCCATATAATCCCTTTCCCTTCAGCGACCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

272

Amino Acids

30.73

Weight (kDa)

6.33

Isoelectric Point (pI)

65.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012572)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g01201 FvH4_2g01202
rosa_chinensis	RchiOBHm_Chr5g0013591 RchiOBHm_Chr5g0013641
rosa_laevigata	RLG00000032033 RLG00000032035
rosa_roxburghii	Rroxscaffold_1G00062950 Rroxscaffold_1G00062970
rosa_rugosa	Rorug05G0011300 Rorug05G0011400
rosa_samantha	Rh5AG105900 Rh5AG106200 Rh5BG102400 Rh5CG113900 Rh5CG114200 Rh5DG100700 Rh5DG100900
rosa_wichuraiana	Rw5G009230 Rw5G009240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	119, 296
Acc65I	GGTACC	2 cut(s)	177, 749
AccB1I	GGYRCC	2 cut(s)	177, 749
AccII	CGCG	2 cut(s)	341, 763
AciI	CCGC	8 cut(s)	43, 166, 175, 262, 339, 680, 761, 814
AcuI	CTGAAG	4 cut(s)	191, 306, 392, 790
AfaI	GTAC	6 cut(s)	179, 367, 401, 544, 596, 751
AflIII	ACRYGT	1 cut(s)	402
AgsI	TTSAA	4 cut(s)	65, 197, 517, 653
AhlI	ACTAGT	1 cut(s)	655
AjnI	CCWGG	5 cut(s)	75, 300, 315, 643, 691
AleI	CACNNNNGTG	1 cut(s)	693
AluBI	AGCT	2 cut(s)	363, 421
AluI	AGCT	2 cut(s)	363, 421
Alw21I	GWGCWC	1 cut(s)	423
Alw26I	GTCTC	2 cut(s)	463, 468
Ama87I	CYCGRG	1 cut(s)	422
AoxI	GGCC	6 cut(s)	34, 45, 263, 394, 551, 640
ApaI	GGGCCC	1 cut(s)	49
ApeKI	GCWGC	1 cut(s)	509
Asp718I	GGTACC	2 cut(s)	177, 749
AspLEI	GCGC	1 cut(s)	629
AsuC2I	CCSGG	4 cut(s)	131, 323, 329, 620
AsuHPI	GGTGA	1 cut(s)	590
AvaI	CYCGRG	1 cut(s)	422
AvaII	GGWCC	9 cut(s)	79, 133, 163, 211, 319, 325, 331, 682, 739
BaeGI	GKGCMC	1 cut(s)	49
BaeI	ACNNNNGTAYC	2 cut(s)	733, 766
BanI	GGYRCC	2 cut(s)	177, 749
BanII	GRGCYC	2 cut(s)	49, 423
BbsI	GAAGAC	6 cut(s)	30, 72, 117, 204, 249, 294
Bbv12I	GWGCWC	1 cut(s)	423
BbvI	GCAGC	1 cut(s)	521
BccI	CCATC	1 cut(s)	26
BceAI	ACGGC	1 cut(s)	538
BciT130I	CCWGG	5 cut(s)	77, 302, 317, 645, 693
BcnI	CCSGG	4 cut(s)	131, 323, 329, 620
BcoDI	GTCTC	2 cut(s)	463, 468
BcuI	ACTAGT	1 cut(s)	655
BfaI	CTAG	3 cut(s)	72, 204, 656
BisI	GCNGC	2 cut(s)	263, 510
BlsI	GCNGC	2 cut(s)	264, 511
Bme1390I	CCNGG	9 cut(s)	77, 131, 302, 317, 323, 329, 620, 645, 693
Bme18I	GGWCC	9 cut(s)	79, 133, 163, 211, 319, 325, 331, 682, 739
BmeT110I	CYCGRG	1 cut(s)	422
BmiI	GGNNCC	9 cut(s)	47, 135, 179, 266, 321, 327, 552, 751, 786
BmrFI	CCNGG	9 cut(s)	77, 131, 302, 317, 323, 329, 620, 645, 693
BmrI	ACTGGG	1 cut(s)	754
BmuI	ACTGGG	1 cut(s)	754
BpiI	GAAGAC	6 cut(s)	30, 72, 117, 204, 249, 294
BpuMI	CCSGG	4 cut(s)	131, 323, 329, 620
BsaJI	CCNNGG	3 cut(s)	301, 643, 691
Bse1I	ACTGG	2 cut(s)	356, 749
Bse3DI	GCAATG	1 cut(s)	462
BseBI	CCWGG	5 cut(s)	77, 302, 317, 645, 693
BseDI	CCNNGG	3 cut(s)	301, 643, 691
BseMI	GCAATG	1 cut(s)	462
BseNI	ACTGG	2 cut(s)	356, 749
BseSI	GKGCMC	1 cut(s)	49
BseXI	GCAGC	1 cut(s)	521
BseYI	CCCAGC	1 cut(s)	136
Bsh1236I	CGCG	2 cut(s)	341, 763
Bsh1285I	CGRYCG	1 cut(s)	814
BshFI	GGCC	6 cut(s)	36, 47, 265, 396, 553, 642
BshNI	GGYRCC	2 cut(s)	177, 749
BsiEI	CGRYCG	1 cut(s)	814
BsiHKAI	GWGCWC	1 cut(s)	423
BsiHKCI	CYCGRG	1 cut(s)	422
BsiSI	CCGG	5 cut(s)	131, 323, 329, 393, 620
BslFI	GGGAC	1 cut(s)	602
BsmAI	GTCTC	2 cut(s)	463, 468
BsmBI	CGTCTC	1 cut(s)	463
BsmFI	GGGAC	1 cut(s)	602
BsnI	GGCC	6 cut(s)	36, 47, 265, 396, 553, 642
BsoBI	CYCGRG	1 cut(s)	422
Bsp120I	GGGCCC	1 cut(s)	45
Bsp1286I	GDGCHC	2 cut(s)	49, 423
BspACI	CCGC	8 cut(s)	43, 166, 175, 262, 339, 680, 761, 814
BspANI	GGCC	6 cut(s)	36, 47, 265, 396, 553, 642
BspFNI	CGCG	2 cut(s)	341, 763
BspLI	GGNNCC	9 cut(s)	47, 135, 179, 266, 321, 327, 552, 751, 786
BspT107I	GGYRCC	2 cut(s)	177, 749
BsrDI	GCAATG	1 cut(s)	462
BsrI	ACTGG	2 cut(s)	356, 749
BssECI	CCNNGG	3 cut(s)	301, 643, 691
Bst2UI	CCWGG	5 cut(s)	77, 302, 317, 645, 693
Bst4CI	ACNGT	3 cut(s)	182, 637, 784
BstC8I	GCNNGC	5 cut(s)	45, 311, 339, 761, 765
BstDEI	CTNAG	1 cut(s)	444
BstEII	GGTNACC	1 cut(s)	578
BstFNI	CGCG	2 cut(s)	341, 763
BstHHI	GCGC	1 cut(s)	629
BstMAI	GTCTC	2 cut(s)	463, 468
BstMCI	CGRYCG	1 cut(s)	814
BstMWI	GCNNNNNNNGC	2 cut(s)	343, 704
BstNI	CCWGG	5 cut(s)	77, 302, 317, 645, 693
BstNSI	RCATGY	1 cut(s)	406
BstPI	GGTNACC	1 cut(s)	578
BstSCI	CCNGG	9 cut(s)	75, 129, 300, 315, 321, 327, 618, 643, 691
BstSLI	GKGCMC	1 cut(s)	49
BstUI	CGCG	2 cut(s)	341, 763
BstV1I	GCAGC	1 cut(s)	521
BstV2I	GAAGAC	6 cut(s)	30, 72, 117, 204, 249, 294
BstXI	CCANNNNNNTGG	1 cut(s)	692
BsuRI	GGCC	6 cut(s)	36, 47, 265, 396, 553, 642
BtsIMutI	CAGTG	1 cut(s)	742
Cac8I	GCNNGC	5 cut(s)	45, 311, 339, 761, 765
CfoI	GCGC	1 cut(s)	629
Csp6I	GTAC	6 cut(s)	178, 366, 400, 543, 595, 750
CviAII	CATG	4 cut(s)	106, 142, 403, 546
CviQI	GTAC	6 cut(s)	178, 366, 400, 543, 595, 750
DdeI	CTNAG	1 cut(s)	444
DraI	TTTAAA	1 cut(s)	409
DrdI	GACNNNNNNGTC	2 cut(s)	119, 296
DseDI	GACNNNNNNGTC	2 cut(s)	119, 296
EciI	GGCGGA	1 cut(s)	155
Ecl136II	GAGCTC	1 cut(s)	421
Eco24I	GRGCYC	2 cut(s)	49, 423
Eco47I	GGWCC	9 cut(s)	79, 133, 163, 211, 319, 325, 331, 682, 739
Eco53kI	GAGCTC	1 cut(s)	421
Eco57I	CTGAAG	4 cut(s)	191, 306, 392, 790
Eco88I	CYCGRG	1 cut(s)	422
Eco91I	GGTNACC	1 cut(s)	578
EcoICRI	GAGCTC	1 cut(s)	421
EcoO109I	RGGNCCY	1 cut(s)	319
EcoO65I	GGTNACC	1 cut(s)	578
EcoRII	CCWGG	5 cut(s)	75, 300, 315, 643, 691
EcoT38I	GRGCYC	2 cut(s)	49, 423
Esp3I	CGTCTC	1 cut(s)	463
FaeI	CATG	4 cut(s)	109, 145, 406, 549
FaqI	GGGAC	1 cut(s)	602
FatI	CATG	4 cut(s)	105, 141, 402, 545
FauI	CCCGC	3 cut(s)	36, 346, 768
Fnu4HI	GCNGC	2 cut(s)	263, 510
FriOI	GRGCYC	2 cut(s)	49, 423
Fsp4HI	GCNGC	2 cut(s)	263, 510
FspBI	CTAG	3 cut(s)	72, 204, 656
GlaI	GCGC	1 cut(s)	628
GluI	GCNGC	2 cut(s)	263, 510
GsaI	CCCAGC	1 cut(s)	140
HaeIII	GGCC	6 cut(s)	36, 47, 265, 396, 553, 642
HapII	CCGG	5 cut(s)	131, 323, 329, 393, 620
HhaI	GCGC	1 cut(s)	629
Hin1II	CATG	4 cut(s)	109, 145, 406, 549
Hin6I	GCGC	1 cut(s)	627
HinP1I	GCGC	1 cut(s)	627
HinfI	GANTC	3 cut(s)	379, 389, 461
HpaII	CCGG	5 cut(s)	131, 323, 329, 393, 620
HphI	GGTGA	1 cut(s)	590
Hpy166II	GTNNAC	2 cut(s)	124, 674
Hpy188I	TCNGA	3 cut(s)	286, 468, 739
Hpy188III	TCNNGA	3 cut(s)	214, 383, 608
Hpy8I	GTNNAC	2 cut(s)	124, 674
HpyAV	CCTTC	5 cut(s)	367, 445, 471, 617, 814
HpyCH4III	ACNGT	3 cut(s)	182, 637, 784
HpyCH4IV	ACGT	3 cut(s)	472, 532, 703
HpyF10VI	GCNNNNNNNGC	2 cut(s)	343, 704
HpyF3I	CTNAG	1 cut(s)	444
HpySE526I	ACGT	3 cut(s)	472, 532, 703
Hsp92II	CATG	4 cut(s)	109, 145, 406, 549
HspAI	GCGC	1 cut(s)	627
KpnI	GGTACC	2 cut(s)	181, 753
Lsp1109I	GCAGC	1 cut(s)	521
MaeI	CTAG	3 cut(s)	72, 204, 656
MaeII	ACGT	3 cut(s)	472, 532, 703
MaeIII	GTNAC	3 cut(s)	235, 578, 608
MboII	GAAGA	7 cut(s)	35, 77, 122, 177, 209, 254, 299
MhlI	GDGCHC	2 cut(s)	49, 423
MluCI	AATT	1 cut(s)	667
MlyI	GAGTC	2 cut(s)	398, 470
MnlI	CCTC	2 cut(s)	292, 299
MseI	TTAA	3 cut(s)	350, 408, 570
MslI	CAYNNNNRTG	1 cut(s)	693
MspI	CCGG	5 cut(s)	131, 323, 329, 393, 620
MspR9I	CCNGG	9 cut(s)	77, 131, 302, 317, 323, 329, 620, 645, 693
MvaI	CCWGG	5 cut(s)	77, 302, 317, 645, 693
MvnI	CGCG	2 cut(s)	341, 763
MwoI	GCNNNNNNNGC	2 cut(s)	343, 704
NciI	CCSGG	4 cut(s)	131, 323, 329, 620
NlaIII	CATG	4 cut(s)	109, 145, 406, 549
NlaIV	GGNNCC	9 cut(s)	47, 135, 179, 266, 321, 327, 552, 751, 786
NmuCI	GTSAC	3 cut(s)	235, 578, 608
NspI	RCATGY	1 cut(s)	406
OliI	CACNNNNGTG	1 cut(s)	693
PaeR7I	CTCGAG	1 cut(s)	422
PciI	ACATGT	1 cut(s)	402
PcsI	WCGNNNNNNNCGW	1 cut(s)	525
PfeI	GAWTC	1 cut(s)	379
PflFI	GACNNNGTC	2 cut(s)	329, 614
PfoI	TCCNGGA	1 cut(s)	618
PkrI	GCNGC	2 cut(s)	264, 511
PleI	GAGTC	2 cut(s)	397, 469
PpsI	GAGTC	2 cut(s)	397, 469
PpuMI	RGGWCCY	1 cut(s)	319
PscI	ACATGT	1 cut(s)	402
Psp124BI	GAGCTC	1 cut(s)	423
Psp5II	RGGWCCY	1 cut(s)	319
Psp6I	CCWGG	5 cut(s)	75, 300, 315, 643, 691
PspEI	GGTNACC	1 cut(s)	578
PspFI	CCCAGC	1 cut(s)	136
PspGI	CCWGG	5 cut(s)	75, 300, 315, 643, 691
PspN4I	GGNNCC	9 cut(s)	47, 135, 179, 266, 321, 327, 552, 751, 786
PspOMI	GGGCCC	1 cut(s)	45
PspPPI	RGGWCCY	1 cut(s)	319
PspXI	VCTCGAGB	1 cut(s)	422
PsyI	GACNNNGTC	2 cut(s)	329, 614
RsaI	GTAC	6 cut(s)	179, 367, 401, 544, 596, 751
RsaNI	GTAC	6 cut(s)	178, 366, 400, 543, 595, 750
RseI	CAYNNNNRTG	1 cut(s)	693
SacI	GAGCTC	1 cut(s)	423
SaqAI	TTAA	3 cut(s)	350, 408, 570
SatI	GCNGC	2 cut(s)	263, 510
SchI	GAGTC	2 cut(s)	398, 470
ScrFI	CCNGG	9 cut(s)	77, 131, 302, 317, 323, 329, 620, 645, 693
SduI	GDGCHC	2 cut(s)	49, 423
SetI	ASST	8 cut(s)	90, 213, 222, 365, 423, 475, 535, 706
Sfr274I	CTCGAG	1 cut(s)	422
SinI	GGWCC	9 cut(s)	79, 133, 163, 211, 319, 325, 331, 682, 739
SlaI	CTCGAG	1 cut(s)	422
SmiMI	CAYNNNNRTG	1 cut(s)	693
SmlI	CTYRAG	1 cut(s)	422
SmoI	CTYRAG	1 cut(s)	422
SpeI	ACTAGT	1 cut(s)	655
Sse9I	AATT	1 cut(s)	667
SsiI	CCGC	8 cut(s)	43, 166, 175, 262, 339, 680, 761, 814
SspMI	CTAG	3 cut(s)	72, 204, 656
SstI	GAGCTC	1 cut(s)	423
StyD4I	CCNGG	9 cut(s)	75, 129, 300, 315, 321, 327, 618, 643, 691
TaaI	ACNGT	3 cut(s)	182, 637, 784
TaiI	ACGT	3 cut(s)	475, 535, 706
TaqI	TCGA	3 cut(s)	384, 423, 528
TasI	AATT	1 cut(s)	667
TatI	WGTACW	2 cut(s)	542, 594
TauI	GCSGC	1 cut(s)	265
TfiI	GAWTC	1 cut(s)	379
Tru1I	TTAA	3 cut(s)	350, 408, 570
Tru9I	TTAA	3 cut(s)	350, 408, 570
TscAI	CASTG	1 cut(s)	749
TseFI	GTSAC	3 cut(s)	235, 578, 608
TseI	GCWGC	1 cut(s)	509
Tsp45I	GTSAC	3 cut(s)	235, 578, 608
TspDTI	ATGAA	1 cut(s)	715
TspGWI	ACGGA	1 cut(s)	254
TspRI	CASTG	1 cut(s)	749
Tth111I	GACNNNGTC	2 cut(s)	329, 614
VpaK11BI	GGWCC	9 cut(s)	79, 133, 163, 211, 319, 325, 331, 682, 739
XceI	RCATGY	1 cut(s)	406
XhoI	CTCGAG	1 cut(s)	422
XspI	CTAG	3 cut(s)	72, 204, 656

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.