FvH4_2g01621

Small ubiquitin-related modifier

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0011425
Physical Location & Seq
Reverse (-)
1466530 .. 1467339
810 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g01621.t1

Sequence Viewer

Length: 534 bp
ATGGTCATAATTGAAGGACTTTTGGTATTTTCTATGCGTGGAGGGATGTTCCAACTTCCTGCATGCCACTATATAAATGAGTATAAATCTCTTTTTTTCATTTGTAGATACATAGAGGCAGATCGATCTGGAAATTTGTCATCAATGGAGAGATATGGTAAAACCAACATCTCATCAGTGGAAAGGTTTAGGAAGATATCGATCTCATCAATGGAAAGTGAAAGGAGATTAGCAGCCACCCTGGAATCCCTTGTCAAACTCACTCTGAAGGAAGACGAAGAACCAATAACTCTCCAGGTGCAGAATCAGATTCATGGTGACATCTTCTACAGGACAGGTCGCACCGTGTCACTTGGAAATGTGTTGAAAGATTACTGTGAACGTAAGGGTCTGGTGTATGAAGAGATGCGTTTCATCTACGATGGAAGAAGAGTACGATCAACACACACCCCACACCAACTGGAAATGGAGGATGATTTTGTTATTGATGCAATGTCCGAGCAGATTGGTGGACCTAAGGTGCTTTCTGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03013 ko05418 map03013 map05418
Pfam Domains
Protein Families
Rad60-SLD

Protein Analysis

178

Amino Acids

20.4

Weight (kDa)

6.12

Isoelectric Point (pI)

49.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD PF11976 96 - 165 2.8e-10 Ubiquitin-2 like Rad60 SUMO-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 133
AcuI CTGAAG 1 cut(s) 287
AfaI GTAC 1 cut(s) 435
AgsI TTSAA 2 cut(s) 14, 367
AjnI CCWGG 2 cut(s) 240, 294
ApeKI GCWGC 1 cut(s) 233
ApoI RAATTY 1 cut(s) 133
AspS9I GGNCC 1 cut(s) 512
AsuHPI GGTGA 1 cut(s) 329
AvaII GGWCC 1 cut(s) 512
AxyI CCTNAGG 1 cut(s) 516
BbsI GAAGAC 1 cut(s) 279
BbvI GCAGC 1 cut(s) 245
BccI CCATC 1 cut(s) 416
BciT130I CCWGG 2 cut(s) 242, 296
BfmI CTRYAG 1 cut(s) 328
BisI GCNGC 1 cut(s) 234
BlsI GCNGC 1 cut(s) 235
Bme1390I CCNGG 2 cut(s) 242, 296
Bme18I GGWCC 1 cut(s) 512
BmgT120I GGNCC 1 cut(s) 512
BmrFI CCNGG 2 cut(s) 242, 296
BmsI GCATC 2 cut(s) 396, 478
BpiI GAAGAC 1 cut(s) 279
BpmI CTGGAG 1 cut(s) 278
Bsa29I ATCGAT 2 cut(s) 124, 200
BsaBI GATNNNNATC 1 cut(s) 200
BsaJI CCNNGG 1 cut(s) 240
Bse1I ACTGG 1 cut(s) 465
Bse21I CCTNAGG 1 cut(s) 516
Bse3DI GCAATG 1 cut(s) 498
Bse8I GATNNNNATC 1 cut(s) 200
BseBI CCWGG 2 cut(s) 242, 296
BseCI ATCGAT 2 cut(s) 124, 200
BseDI CCNNGG 1 cut(s) 240
BseGI GGATG 2 cut(s) 51, 478
BseJI GATNNNNATC 1 cut(s) 200
BseMI GCAATG 1 cut(s) 498
BseNI ACTGG 1 cut(s) 465
BseXI GCAGC 1 cut(s) 245
BsgI GTGCAG 1 cut(s) 320
BshVI ATCGAT 2 cut(s) 124, 200
Bsp143I GATC 4 cut(s) 121, 125, 201, 437
BspDI ATCGAT 2 cut(s) 124, 200
BsrDI GCAATG 1 cut(s) 498
BsrI ACTGG 1 cut(s) 465
BssECI CCNNGG 1 cut(s) 240
BssMI GATC 4 cut(s) 121, 125, 201, 437
Bst2UI CCWGG 2 cut(s) 242, 296
Bst4CI ACNGT 2 cut(s) 346, 377
Bst6I CTCTTC 2 cut(s) 396, 424
BstC8I GCNNGC 1 cut(s) 64
BstDEI CTNAG 1 cut(s) 516
BstF5I GGATG 2 cut(s) 51, 478
BstKTI GATC 4 cut(s) 124, 128, 204, 440
BstMBI GATC 4 cut(s) 121, 125, 201, 437
BstNI CCWGG 2 cut(s) 242, 296
BstNSI RCATGY 1 cut(s) 66
BstSCI CCNGG 2 cut(s) 240, 294
BstSFI CTRYAG 1 cut(s) 328
BstV1I GCAGC 1 cut(s) 245
BstV2I GAAGAC 1 cut(s) 279
Bsu15I ATCGAT 2 cut(s) 124, 200
Bsu36I CCTNAGG 1 cut(s) 516
BsuTUI ATCGAT 2 cut(s) 124, 200
BtsCI GGATG 2 cut(s) 51, 478
BtsIMutI CAGTG 1 cut(s) 183
Cac8I GCNNGC 1 cut(s) 64
Cfr13I GGNCC 1 cut(s) 512
ClaI ATCGAT 2 cut(s) 124, 200
Csp6I GTAC 1 cut(s) 434
CviAII CATG 2 cut(s) 63, 314
CviJI RGCY 1 cut(s) 236
CviKI_1 RGCY 1 cut(s) 236
CviQI GTAC 1 cut(s) 434
DdeI CTNAG 1 cut(s) 516
DpnI GATC 4 cut(s) 123, 127, 203, 439
DpnII GATC 4 cut(s) 121, 125, 201, 437
Eam1104I CTCTTC 2 cut(s) 396, 424
EarI CTCTTC 2 cut(s) 396, 424
Eco32I GATATC 1 cut(s) 198
Eco47I GGWCC 1 cut(s) 512
Eco57I CTGAAG 1 cut(s) 287
Eco81I CCTNAGG 1 cut(s) 516
EcoRII CCWGG 2 cut(s) 240, 294
EcoRV GATATC 1 cut(s) 198
FaeI CATG 2 cut(s) 66, 317
FatI CATG 2 cut(s) 62, 313
Fnu4HI GCNGC 1 cut(s) 234
FokI GGATG 2 cut(s) 58, 485
Fsp4HI GCNGC 1 cut(s) 234
GluI GCNGC 1 cut(s) 234
GsuI CTGGAG 1 cut(s) 278
Hin1II CATG 2 cut(s) 66, 317
HinfI GANTC 3 cut(s) 245, 304, 310
HphI GGTGA 1 cut(s) 329
Hpy166II GTNNAC 2 cut(s) 380, 512
Hpy188I TCNGA 3 cut(s) 267, 309, 499
Hpy188III TCNNGA 2 cut(s) 129, 528
Hpy8I GTNNAC 2 cut(s) 380, 512
HpyAV CCTTC 2 cut(s) 8, 262
HpyCH4III ACNGT 2 cut(s) 346, 377
HpyCH4IV ACGT 1 cut(s) 382
HpyCH4V TGCA 3 cut(s) 62, 301, 491
HpyF3I CTNAG 1 cut(s) 516
HpySE526I ACGT 1 cut(s) 382
Hsp92II CATG 2 cut(s) 66, 317
Kzo9I GATC 4 cut(s) 121, 125, 201, 437
Lsp1109I GCAGC 1 cut(s) 245
LweI GCATC 2 cut(s) 396, 478
MaeII ACGT 1 cut(s) 382
MaeIII GTNAC 2 cut(s) 317, 348
MalI GATC 4 cut(s) 123, 127, 203, 439
MboI GATC 4 cut(s) 121, 125, 201, 437
MboII GAAGA 7 cut(s) 205, 284, 290, 316, 413, 438, 441
MluCI AATT 2 cut(s) 9, 133
MmeI TCCRAC 1 cut(s) 76
MnlI CCTC 3 cut(s) 35, 109, 463
MspR9I CCNGG 2 cut(s) 242, 296
MvaI CCWGG 2 cut(s) 242, 296
NdeII GATC 4 cut(s) 121, 125, 201, 437
NlaIII CATG 2 cut(s) 66, 317
NmuCI GTSAC 2 cut(s) 317, 348
NspI RCATGY 1 cut(s) 66
PaeI GCATGC 1 cut(s) 66
PfeI GAWTC 3 cut(s) 245, 304, 310
PkrI GCNGC 1 cut(s) 235
Psp6I CCWGG 2 cut(s) 240, 294
PspGI CCWGG 2 cut(s) 240, 294
PspPI GGNCC 1 cut(s) 512
RsaI GTAC 1 cut(s) 435
RsaNI GTAC 1 cut(s) 434
SatI GCNGC 1 cut(s) 234
Sau3AI GATC 4 cut(s) 121, 125, 201, 437
Sau96I GGNCC 1 cut(s) 512
ScrFI CCNGG 2 cut(s) 242, 296
SetI ASST 6 cut(s) 188, 300, 340, 385, 517, 522
SfaNI GCATC 2 cut(s) 396, 478
SfcI CTRYAG 1 cut(s) 328
SinI GGWCC 1 cut(s) 512
SphI GCATGC 1 cut(s) 66
Sse9I AATT 2 cut(s) 9, 133
StyD4I CCNGG 2 cut(s) 240, 294
TaaI ACNGT 2 cut(s) 346, 377
TaiI ACGT 1 cut(s) 385
TaqI TCGA 2 cut(s) 124, 200
TasI AATT 2 cut(s) 9, 133
TfiI GAWTC 3 cut(s) 245, 304, 310
TscAI CASTG 1 cut(s) 183
TseFI GTSAC 2 cut(s) 317, 348
TseI GCWGC 1 cut(s) 233
Tsp45I GTSAC 2 cut(s) 317, 348
TspDTI ATGAA 4 cut(s) 88, 302, 403, 414
TspRI CASTG 1 cut(s) 183
VpaK11BI GGWCC 1 cut(s) 512
XapI RAATTY 1 cut(s) 133
XceI RCATGY 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.