Rw6G001950

Small ubiquitin-related modifier

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Reverse (-)
3183445 .. 3183702
258 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G001950.1

Sequence Viewer

Length: 258 bp
ATGGAGAGATTTGGTAAATCCAAAATCTCATTCGTGGAAAGATCTAGTAAGATAACATTCTCGTCAATAGAGAGTGAAGGGAGATTAGCAACCACCCTGGAATCCCTTGTCAAACTCACTCTTAAGGAAGATGAAGAACCGATAACTCTCCAGGTGCAGAATCAGAATCATGGTGACATCTACTACAGGACCGGTCGCACCGTATCACTTGGAAATATATTGAAAGATTACTGTGAACGTAAAGGTTTGGTGTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

85

Amino Acids

9.75

Weight (kDa)

7.85

Isoelectric Point (pI)

38.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AflII CTTAAG 1 cut(s) 122
AgeI ACCGGT 1 cut(s) 191
AgsI TTSAA 1 cut(s) 223
AjnI CCWGG 2 cut(s) 96, 150
AjuI GAANNNNNNNTTGG 2 cut(s) 14, 46
AsiGI ACCGGT 1 cut(s) 191
AspS9I GGNCC 1 cut(s) 189
AsuHPI GGTGA 1 cut(s) 185
AvaII GGWCC 1 cut(s) 189
BciT130I CCWGG 2 cut(s) 98, 152
BfaI CTAG 1 cut(s) 45
BfmI CTRYAG 1 cut(s) 184
BfrI CTTAAG 1 cut(s) 122
BglII AGATCT 1 cut(s) 41
Bme1390I CCNGG 2 cut(s) 98, 152
Bme18I GGWCC 1 cut(s) 189
BmgT120I GGNCC 1 cut(s) 189
BmrFI CCNGG 2 cut(s) 98, 152
BpmI CTGGAG 1 cut(s) 134
BsaJI CCNNGG 1 cut(s) 96
BsaWI WCCGGW 1 cut(s) 191
Bse118I RCCGGY 1 cut(s) 191
BseBI CCWGG 2 cut(s) 98, 152
BseDI CCNNGG 1 cut(s) 96
BsgI GTGCAG 1 cut(s) 176
Bsh1285I CGRYCG 1 cut(s) 196
BshTI ACCGGT 1 cut(s) 191
BsiEI CGRYCG 1 cut(s) 196
BsiSI CCGG 1 cut(s) 192
Bsp143I GATC 1 cut(s) 41
BspTI CTTAAG 1 cut(s) 122
BsrFI RCCGGY 1 cut(s) 191
BssAI RCCGGY 1 cut(s) 191
BssECI CCNNGG 1 cut(s) 96
BssMI GATC 1 cut(s) 41
Bst2UI CCWGG 2 cut(s) 98, 152
Bst4CI ACNGT 2 cut(s) 202, 233
BstAFI CTTAAG 1 cut(s) 122
BstKTI GATC 1 cut(s) 44
BstMBI GATC 1 cut(s) 41
BstMCI CGRYCG 1 cut(s) 196
BstNI CCWGG 2 cut(s) 98, 152
BstSCI CCNGG 2 cut(s) 96, 150
BstSFI CTRYAG 1 cut(s) 184
BstX2I RGATCY 1 cut(s) 41
BstYI RGATCY 1 cut(s) 41
Cfr10I RCCGGY 1 cut(s) 191
Cfr13I GGNCC 1 cut(s) 189
CspAI ACCGGT 1 cut(s) 191
CviAII CATG 1 cut(s) 170
DpnI GATC 1 cut(s) 43
DpnII GATC 1 cut(s) 41
Eco47I GGWCC 1 cut(s) 189
EcoRII CCWGG 2 cut(s) 96, 150
FaeI CATG 1 cut(s) 173
FaiI YATR 2 cut(s) 171, 218
FatI CATG 1 cut(s) 169
FspBI CTAG 1 cut(s) 45
GsuI CTGGAG 1 cut(s) 134
HapII CCGG 1 cut(s) 192
Hin1II CATG 1 cut(s) 173
HinfI GANTC 3 cut(s) 101, 160, 166
HpaII CCGG 1 cut(s) 192
HphI GGTGA 1 cut(s) 185
Hpy166II GTNNAC 1 cut(s) 236
Hpy188I TCNGA 1 cut(s) 165
Hpy8I GTNNAC 1 cut(s) 236
HpyAV CCTTC 1 cut(s) 71
HpyCH4III ACNGT 2 cut(s) 202, 233
HpyCH4IV ACGT 1 cut(s) 238
HpyCH4V TGCA 1 cut(s) 157
HpySE526I ACGT 1 cut(s) 238
Hsp92II CATG 1 cut(s) 173
Kzo9I GATC 1 cut(s) 41
LpnPI CCDG 6 cut(s) 83, 110, 137, 164, 172, 205
MaeI CTAG 1 cut(s) 45
MaeII ACGT 1 cut(s) 238
MaeIII GTNAC 1 cut(s) 173
MalI GATC 1 cut(s) 43
MboI GATC 1 cut(s) 41
MboII GAAGA 2 cut(s) 140, 146
MflI RGATCY 1 cut(s) 41
MseI TTAA 2 cut(s) 123, 256
MspCI CTTAAG 1 cut(s) 122
MspI CCGG 1 cut(s) 192
MspR9I CCNGG 2 cut(s) 98, 152
MvaI CCWGG 2 cut(s) 98, 152
NdeII GATC 1 cut(s) 41
NlaIII CATG 1 cut(s) 173
NmuCI GTSAC 1 cut(s) 173
PfeI GAWTC 3 cut(s) 101, 160, 166
PinAI ACCGGT 1 cut(s) 191
Psp6I CCWGG 2 cut(s) 96, 150
PspGI CCWGG 2 cut(s) 96, 150
PspPI GGNCC 1 cut(s) 189
PsuI RGATCY 1 cut(s) 41
SaqAI TTAA 2 cut(s) 123, 256
Sau3AI GATC 1 cut(s) 41
Sau96I GGNCC 1 cut(s) 189
ScrFI CCNGG 2 cut(s) 98, 152
SetI ASST 3 cut(s) 156, 241, 247
SfcI CTRYAG 1 cut(s) 184
SinI GGWCC 1 cut(s) 189
SmlI CTYRAG 1 cut(s) 122
SmoI CTYRAG 1 cut(s) 122
SspMI CTAG 1 cut(s) 45
StyD4I CCNGG 2 cut(s) 96, 150
TaaI ACNGT 2 cut(s) 202, 233
TaiI ACGT 1 cut(s) 241
TfiI GAWTC 3 cut(s) 101, 160, 166
Tru1I TTAA 2 cut(s) 123, 256
Tru9I TTAA 2 cut(s) 123, 256
TseFI GTSAC 1 cut(s) 173
Tsp45I GTSAC 1 cut(s) 173
TspDTI ATGAA 1 cut(s) 147
Vha464I CTTAAG 1 cut(s) 122
VpaK11BI GGWCC 1 cut(s) 189
XspI CTAG 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.