Rh6AG023600

Small ubiquitin-related modifier

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Reverse (-)
2760809 .. 2761600
792 bp
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UTR
Exon/CDS
Intron
Rh6AG023600.1

Sequence Viewer

Length: 405 bp
ATGGAGAGATCTGGTAAATCCAAGAGATCTGGTAAATCCAAGAGATTTGGTAAATCCAAAGTCTCATTTGAGAGATTTAATAAAATTACATTCTCATCAATAGAGAGTGAAGGGAGATTAGCAACCACCCTGGAATCCCTTGTCAAACTCACTCTTAAGGAAGATGAAGAACCGATAACTCTCCAGGTGCAGAATCAGAATCATGGTGACATCTACTACAGGACCGGTCGCACCGTATCACTTGGAAATATATTGAAAGATTACTGTGAACGTAAAGGTTTGGTCTATGAAGAAATGCGTTTCATCTACGATGGAAAAAGGGTACGCTCAACTCACACCCCACAACAACTGGAAATGGAGGATGATTTTGTTATTGATGCAATGTCCGAGCAGATTGGTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

134

Amino Acids

15.45

Weight (kDa)

8.64

Isoelectric Point (pI)

53.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD PF11976 59 - 128 1.2e-11 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 62 - 130 3.7e-06 Ubiquitin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 324
AflII CTTAAG 1 cut(s) 155
AgeI ACCGGT 1 cut(s) 224
AgsI TTSAA 1 cut(s) 256
AjnI CCWGG 2 cut(s) 129, 183
Alw26I GTCTC 1 cut(s) 67
AsiGI ACCGGT 1 cut(s) 224
AspS9I GGNCC 1 cut(s) 222
AsuHPI GGTGA 1 cut(s) 218
AvaII GGWCC 1 cut(s) 222
BccI CCATC 1 cut(s) 305
BciT130I CCWGG 2 cut(s) 131, 185
BcoDI GTCTC 1 cut(s) 67
BfmI CTRYAG 1 cut(s) 217
BfrI CTTAAG 1 cut(s) 155
BglII AGATCT 2 cut(s) 8, 26
Bme1390I CCNGG 2 cut(s) 131, 185
Bme18I GGWCC 1 cut(s) 222
BmgT120I GGNCC 1 cut(s) 222
BmrFI CCNGG 2 cut(s) 131, 185
BmsI GCATC 1 cut(s) 367
BpmI CTGGAG 1 cut(s) 167
BsaJI CCNNGG 1 cut(s) 129
BsaWI WCCGGW 1 cut(s) 224
Bse118I RCCGGY 1 cut(s) 224
Bse1I ACTGG 1 cut(s) 354
Bse3DI GCAATG 1 cut(s) 387
BseBI CCWGG 2 cut(s) 131, 185
BseDI CCNNGG 1 cut(s) 129
BseGI GGATG 1 cut(s) 367
BseMI GCAATG 1 cut(s) 387
BseNI ACTGG 1 cut(s) 354
BsgI GTGCAG 1 cut(s) 209
Bsh1285I CGRYCG 1 cut(s) 229
BshTI ACCGGT 1 cut(s) 224
BsiEI CGRYCG 1 cut(s) 229
BsiSI CCGG 1 cut(s) 225
BsmAI GTCTC 1 cut(s) 67
Bsp143I GATC 2 cut(s) 8, 26
BspTI CTTAAG 1 cut(s) 155
BsrDI GCAATG 1 cut(s) 387
BsrFI RCCGGY 1 cut(s) 224
BsrI ACTGG 1 cut(s) 354
BssAI RCCGGY 1 cut(s) 224
BssECI CCNNGG 1 cut(s) 129
BssMI GATC 2 cut(s) 8, 26
Bst2UI CCWGG 2 cut(s) 131, 185
Bst4CI ACNGT 2 cut(s) 235, 266
BstAFI CTTAAG 1 cut(s) 155
BstF5I GGATG 1 cut(s) 367
BstKTI GATC 2 cut(s) 11, 29
BstMAI GTCTC 1 cut(s) 67
BstMBI GATC 2 cut(s) 8, 26
BstMCI CGRYCG 1 cut(s) 229
BstNI CCWGG 2 cut(s) 131, 185
BstSCI CCNGG 2 cut(s) 129, 183
BstSFI CTRYAG 1 cut(s) 217
BstX2I RGATCY 2 cut(s) 8, 26
BstYI RGATCY 2 cut(s) 8, 26
BtsCI GGATG 1 cut(s) 367
Cfr10I RCCGGY 1 cut(s) 224
Cfr13I GGNCC 1 cut(s) 222
Csp6I GTAC 1 cut(s) 323
CspAI ACCGGT 1 cut(s) 224
CviAII CATG 1 cut(s) 203
CviQI GTAC 1 cut(s) 323
DpnI GATC 2 cut(s) 10, 28
DpnII GATC 2 cut(s) 8, 26
Eco47I GGWCC 1 cut(s) 222
EcoRII CCWGG 2 cut(s) 129, 183
FaeI CATG 1 cut(s) 206
FaiI YATR 3 cut(s) 204, 251, 288
FatI CATG 1 cut(s) 202
FokI GGATG 1 cut(s) 374
GsuI CTGGAG 1 cut(s) 167
HapII CCGG 1 cut(s) 225
Hin1II CATG 1 cut(s) 206
HinfI GANTC 3 cut(s) 134, 193, 199
HpaII CCGG 1 cut(s) 225
HphI GGTGA 1 cut(s) 218
Hpy166II GTNNAC 1 cut(s) 269
Hpy188I TCNGA 2 cut(s) 198, 388
Hpy8I GTNNAC 1 cut(s) 269
HpyAV CCTTC 1 cut(s) 104
HpyCH4III ACNGT 2 cut(s) 235, 266
HpyCH4IV ACGT 1 cut(s) 271
HpyCH4V TGCA 2 cut(s) 190, 380
HpySE526I ACGT 1 cut(s) 271
Hsp92II CATG 1 cut(s) 206
Kzo9I GATC 2 cut(s) 8, 26
LpnPI CCDG 8 cut(s) 15, 116, 143, 170, 197, 205, 238, 335
LweI GCATC 1 cut(s) 367
MaeII ACGT 1 cut(s) 271
MaeIII GTNAC 1 cut(s) 206
MalI GATC 2 cut(s) 10, 28
MboI GATC 2 cut(s) 8, 26
MboII GAAGA 3 cut(s) 173, 179, 302
MflI RGATCY 2 cut(s) 8, 26
MluCI AATT 1 cut(s) 84
MnlI CCTC 1 cut(s) 352
MseI TTAA 3 cut(s) 78, 156, 403
MspCI CTTAAG 1 cut(s) 155
MspI CCGG 1 cut(s) 225
MspR9I CCNGG 2 cut(s) 131, 185
MvaI CCWGG 2 cut(s) 131, 185
NdeII GATC 2 cut(s) 8, 26
NlaIII CATG 1 cut(s) 206
NmuCI GTSAC 1 cut(s) 206
PfeI GAWTC 3 cut(s) 134, 193, 199
PinAI ACCGGT 1 cut(s) 224
Psp6I CCWGG 2 cut(s) 129, 183
PspGI CCWGG 2 cut(s) 129, 183
PspPI GGNCC 1 cut(s) 222
PsuI RGATCY 2 cut(s) 8, 26
RsaI GTAC 1 cut(s) 324
RsaNI GTAC 1 cut(s) 323
SaqAI TTAA 3 cut(s) 78, 156, 403
Sau3AI GATC 2 cut(s) 8, 26
Sau96I GGNCC 1 cut(s) 222
ScrFI CCNGG 2 cut(s) 131, 185
SetI ASST 3 cut(s) 189, 274, 280
SfaNI GCATC 1 cut(s) 367
SfcI CTRYAG 1 cut(s) 217
SinI GGWCC 1 cut(s) 222
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
Sse9I AATT 1 cut(s) 84
StyD4I CCNGG 2 cut(s) 129, 183
TaaI ACNGT 2 cut(s) 235, 266
TaiI ACGT 1 cut(s) 274
TasI AATT 1 cut(s) 84
TfiI GAWTC 3 cut(s) 134, 193, 199
Tru1I TTAA 3 cut(s) 78, 156, 403
Tru9I TTAA 3 cut(s) 78, 156, 403
TseFI GTSAC 1 cut(s) 206
Tsp45I GTSAC 1 cut(s) 206
TspDTI ATGAA 3 cut(s) 180, 292, 303
Vha464I CTTAAG 1 cut(s) 155
VpaK11BI GGWCC 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.