Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0011425

Physical Location & Seq

Genomic Coordinates Reverse (-)

69238808 .. 69240085

Gene Structure 1278 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0508900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGAATTCTGTCCTGTGTGGTGGACCTTGGATTTTGGCTGGCCAAACCTTGATTGTGAGAAAATGGAGCCCTGATTTTGACCCTATGCATGACGTAATTGGCAAGATGGCTCTATGGGTCAGGATTTGTGGTTTGCCTGTTAAGTACTTTAAGGATTATACTGTTGCTAGGATTGGTAAAATTTTGGGGGATGTAGTCAAGGTTGATCAGGTGACCATTGGACAAGCTATAGGAAAATTTGCACGGGTCTGCATTGAAGTTGATTTGAGTAAACCTTTGCGCCCTTATGTTGAAGTTGAATCTGTGGCTTATAATGTTGTTTATGAAGGAATCTCTTTAATCTACTTTGAGTGTGGATGCTTTGGCCATTCCAAAGACAAATGTCCTACTGTGTTTACTGTGCCTGCTGCTCCCCCACATGATGATGGTCCGGAATGTGCTGATAAGAATCAAACCTTGGCTTCTACTAAGAATTATGTCATGCAAGATATGGATACACCTCAAACTGCTTCTTCTGTGATCAAAGAAGACATGGGACCTTGGATGCTTTTGAATTACAGGAATAAGAAGAAGAATGATGCTGGTGGAACAAAGAAAAGTGTCAGTAAGGGCTCTAGATTTGCTGTACTACAAGAGGAAGATGCCAATGTTTCAAATGAAACTGCGACCATAGTTGACAATATTACTAAAACTCCCACCCCCACTATTGTGAAGCTCTGGACAAGTTTCCACGACAAGAAAAAGAAATTCTCTAAAGCTATCTCTGCTAAGTCTGGTACTGTGACAGATGCAAAAACCTCTGTTTCTGCTTCATTGAGTGGAAGTGCCTTACAGAATGCCAAAATAGTGGTAGGCTCCAACCCTGGAACCACAACAACTGAGTCAAGAATTCCAATGAAAGATGTCTCCAATAATATTGGCTGCAGTAGTGGTGGGAAATCCACTTTCCAATATCAAAGAAAATCTAAGGGCCTTACCCCTCCTGCTGGCAAACATCAATCTCATATCTTCAAAAAACTTTCTTTTGAAAATAATGAGGTTAATGTGTGTGGTAATGGGATTTCAGCCATATTTGGCCACTGTCCTCCTGAGGAAAATACTGAGGAATGTGATTTGCGTGCTCATATGACTCAGATTAGTGACAATGTTGTGGGTACTTCATCTCCAATGGAAAATGATTCGGACAAGTTTGTTGATATGACTTTTGCTGCTAATAGCCTATTAACTTATGATGATTGCCTGCCTTCCAACTCTTTGGAAGGCATAGTTGATGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 ko05418 map03013 map05418

Pfam Domains

Protein Families

Rad60-SLD

Protein Analysis

425

Amino Acids

46.15

Weight (kDa)

7.05

Isoelectric Point (pI)

33.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011425)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32765
fragaria_vesca	FvH4_2g01621
malus_domestica	MD04G1236700.v1.1
prunus_persica	Prupe.6G356700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0244421 RchiOBHm_Chr6g0244451
rosa_multiflora	Rmu_sc0000633.1_g000006
rosa_roxburghii	Rroxscaffold_6G00426880 Rroxscaffold_7G00215850
rosa_rugosa	Rorug05G0508500 Rorug05G0508900
rosa_samantha	Rh3BG013200 Rh3CG012300 Rh3DG014000 Rh6AG023600 Rh6AG023900 Rh6BG019300 Rh6CG016500 Rh6DG017600
rosa_wichuraiana	Rw6G001950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	312
AccIII	TCCGGA	1 cut(s)	430
AcoI	YGGCCR	3 cut(s)	40, 364, 1075
AcsI	RAATTY	5 cut(s)	4, 180, 236, 746, 888
AfaI	GTAC	4 cut(s)	146, 627, 778, 1156
AfiI	CCNNNNNNNGG	1 cut(s)	986
AgsI	TTSAA	7 cut(s)	257, 293, 299, 553, 654, 1012, 1028
AjnI	CCWGG	1 cut(s)	862
AjuI	GAANNNNNNNTTGG	2 cut(s)	440, 472
AleI	CACNNNNGTG	1 cut(s)	707
AluBI	AGCT	3 cut(s)	227, 715, 758
AluI	AGCT	3 cut(s)	227, 715, 758
Alw21I	GWGCWC	1 cut(s)	1123
Alw26I	GTCTC	1 cut(s)	910
Aor13HI	TCCGGA	1 cut(s)	430
AoxI	GGCC	4 cut(s)	40, 364, 970, 1075
ApeKI	GCWGC	3 cut(s)	407, 921, 1208
ApoI	RAATTY	5 cut(s)	4, 180, 236, 746, 888
AspLEI	GCGC	1 cut(s)	282
AspS9I	GGNCC	4 cut(s)	23, 428, 536, 970
AsuHPI	GGTGA	1 cut(s)	223
AvaII	GGWCC	3 cut(s)	23, 428, 536
AxyI	CCTNAGG	1 cut(s)	1089
BalI	TGGCCA	3 cut(s)	42, 366, 1077
BanII	GRGCYC	2 cut(s)	71, 614
BbsI	GAAGAC	1 cut(s)	534
Bbv12I	GWGCWC	1 cut(s)	1123
BbvI	GCAGC	3 cut(s)	394, 908, 1195
BccI	CCATC	2 cut(s)	100, 419
BciT130I	CCWGG	1 cut(s)	864
BciVI	GTATCC	1 cut(s)	487
BclI	TGATCA	2 cut(s)	205, 519
BcoDI	GTCTC	1 cut(s)	910
BfaI	CTAG	2 cut(s)	168, 615
BfmI	CTRYAG	2 cut(s)	228, 922
BfuI	GTATCC	1 cut(s)	487
BisI	GCNGC	3 cut(s)	408, 922, 1209
BlsI	GCNGC	3 cut(s)	409, 923, 1210
BmcAI	AGTACT	1 cut(s)	146
Bme1390I	CCNGG	1 cut(s)	864
Bme18I	GGWCC	3 cut(s)	23, 428, 536
BmgT120I	GGNCC	4 cut(s)	23, 428, 536, 970
BmiI	GGNNCC	4 cut(s)	68, 537, 856, 868
BmrFI	CCNGG	1 cut(s)	864
BmsI	GCATC	6 cut(s)	347, 534, 568, 631, 778, 1261
BoxI	GACNNNNGTC	1 cut(s)	381
BpiI	GAAGAC	1 cut(s)	534
BsaBI	GATNNNNATC	1 cut(s)	447
BsaJI	CCNNGG	4 cut(s)	26, 456, 539, 862
BsaWI	WCCGGW	1 cut(s)	430
BsaXI	ACNNNNNCTCC	4 cut(s)	676, 706, 1147, 1177
Bsc4I	CCNNNNNNNGG	1 cut(s)	986
Bse21I	CCTNAGG	1 cut(s)	1089
Bse8I	GATNNNNATC	1 cut(s)	447
BseAI	TCCGGA	1 cut(s)	430
BseBI	CCWGG	1 cut(s)	864
BseDI	CCNNGG	4 cut(s)	26, 456, 539, 862
BseGI	GGATG	3 cut(s)	196, 362, 549
BseJI	GATNNNNATC	1 cut(s)	447
BseLI	CCNNNNNNNGG	1 cut(s)	986
BseMII	CTCAG	4 cut(s)	870, 1080, 1092, 1145
BseXI	GCAGC	3 cut(s)	394, 908, 1195
BshFI	GGCC	4 cut(s)	42, 366, 972, 1077
BsiHKAI	GWGCWC	1 cut(s)	1123
BsiSI	CCGG	1 cut(s)	431
BslFI	GGGAC	1 cut(s)	549
BslI	CCNNNNNNNGG	1 cut(s)	986
BsmAI	GTCTC	1 cut(s)	910
BsmFI	GGGAC	1 cut(s)	549
BsmI	GAATGC	1 cut(s)	841
BsnI	GGCC	4 cut(s)	42, 366, 972, 1077
Bsp1286I	GDGCHC	3 cut(s)	71, 614, 1123
Bsp13I	TCCGGA	1 cut(s)	430
Bsp143I	GATC	2 cut(s)	205, 519
BspANI	GGCC	4 cut(s)	42, 366, 972, 1077
BspCNI	CTCAG	4 cut(s)	871, 1081, 1093, 1144
BspEI	TCCGGA	1 cut(s)	430
BspLI	GGNNCC	4 cut(s)	68, 537, 856, 868
BspMAI	CTGCAG	1 cut(s)	926
BssECI	CCNNGG	4 cut(s)	26, 456, 539, 862
BssMI	GATC	2 cut(s)	205, 519
BssT1I	CCWWGG	3 cut(s)	26, 456, 539
Bst2UI	CCWGG	1 cut(s)	864
Bst4CI	ACNGT	5 cut(s)	163, 391, 400, 781, 1082
BstC8I	GCNNGC	5 cut(s)	40, 405, 988, 1119, 1241
BstDEI	CTNAG	7 cut(s)	468, 768, 879, 966, 1089, 1101, 1131
BstEII	GGTNACC	1 cut(s)	211
BstF5I	GGATG	3 cut(s)	196, 362, 549
BstHHI	GCGC	1 cut(s)	282
BstKTI	GATC	2 cut(s)	208, 522
BstMAI	GTCTC	1 cut(s)	910
BstMBI	GATC	2 cut(s)	205, 519
BstMWI	GCNNNNNNNGC	1 cut(s)	764
BstNI	CCWGG	1 cut(s)	864
BstPAI	GACNNNNGTC	1 cut(s)	381
BstPI	GGTNACC	1 cut(s)	211
BstSCI	CCNGG	1 cut(s)	862
BstSFI	CTRYAG	2 cut(s)	228, 922
BstV1I	GCAGC	3 cut(s)	394, 908, 1195
BstV2I	GAAGAC	1 cut(s)	534
BstXI	CCANNNNNNTGG	2 cut(s)	847, 1255
Bsu36I	CCTNAGG	1 cut(s)	1089
BsuI	GTATCC	1 cut(s)	487
BsuRI	GGCC	4 cut(s)	42, 366, 972, 1077
BtsCI	GGATG	3 cut(s)	196, 362, 549
BtsIMutI	CAGTG	1 cut(s)	1078
Cac8I	GCNNGC	5 cut(s)	40, 405, 988, 1119, 1241
CfoI	GCGC	1 cut(s)	282
Cfr13I	GGNCC	4 cut(s)	23, 428, 536, 970
Csp6I	GTAC	4 cut(s)	145, 626, 777, 1155
CviAII	CATG	4 cut(s)	89, 419, 481, 532
CviQI	GTAC	4 cut(s)	145, 626, 777, 1155
DdeI	CTNAG	7 cut(s)	468, 768, 879, 966, 1089, 1101, 1131
DpnI	GATC	2 cut(s)	207, 521
DpnII	GATC	2 cut(s)	205, 519
EaeI	YGGCCR	3 cut(s)	40, 364, 1075
Eco130I	CCWWGG	3 cut(s)	26, 456, 539
Eco24I	GRGCYC	2 cut(s)	71, 614
Eco47I	GGWCC	3 cut(s)	23, 428, 536
Eco81I	CCTNAGG	1 cut(s)	1089
Eco91I	GGTNACC	1 cut(s)	211
EcoO109I	RGGNCCY	2 cut(s)	536, 970
EcoO65I	GGTNACC	1 cut(s)	211
EcoRI	GAATTC	2 cut(s)	4, 888
EcoRII	CCWGG	1 cut(s)	862
EcoT14I	CCWWGG	3 cut(s)	26, 456, 539
EcoT22I	ATGCAT	1 cut(s)	90
EcoT38I	GRGCYC	2 cut(s)	71, 614
ErhI	CCWWGG	3 cut(s)	26, 456, 539
FaeI	CATG	4 cut(s)	92, 422, 484, 535
FaqI	GGGAC	1 cut(s)	549
FatI	CATG	4 cut(s)	88, 418, 480, 531
FauNDI	CATATG	1 cut(s)	1125
FbaI	TGATCA	2 cut(s)	205, 519
Fnu4HI	GCNGC	3 cut(s)	408, 922, 1209
FokI	GGATG	3 cut(s)	203, 369, 556
FriOI	GRGCYC	2 cut(s)	71, 614
Fsp4HI	GCNGC	3 cut(s)	408, 922, 1209
FspBI	CTAG	2 cut(s)	168, 615
GlaI	GCGC	1 cut(s)	281
GluI	GCNGC	3 cut(s)	408, 922, 1209
HaeIII	GGCC	4 cut(s)	42, 366, 972, 1077
HapII	CCGG	1 cut(s)	431
HhaI	GCGC	1 cut(s)	282
Hin1II	CATG	4 cut(s)	92, 422, 484, 535
Hin6I	GCGC	1 cut(s)	280
HinP1I	GCGC	1 cut(s)	280
HincII	GTYRAC	1 cut(s)	676
HindII	GTYRAC	1 cut(s)	676
HinfI	GANTC	6 cut(s)	299, 330, 448, 881, 1129, 1178
HpaII	CCGG	1 cut(s)	431
HphI	GGTGA	1 cut(s)	223
Hpy166II	GTNNAC	4 cut(s)	23, 272, 396, 676
Hpy188I	TCNGA	2 cut(s)	1134, 1183
Hpy188III	TCNNGA	6 cut(s)	121, 431, 615, 718, 885, 1088
Hpy8I	GTNNAC	4 cut(s)	23, 272, 396, 676
HpyAV	CCTTC	3 cut(s)	320, 1253, 1254
HpyCH4III	ACNGT	5 cut(s)	163, 391, 400, 781, 1082
HpyCH4IV	ACGT	1 cut(s)	93
HpyCH4V	TGCA	6 cut(s)	88, 242, 252, 484, 791, 924
HpyF10VI	GCNNNNNNNGC	1 cut(s)	764
HpyF3I	CTNAG	7 cut(s)	468, 768, 879, 966, 1089, 1101, 1131
HpySE526I	ACGT	1 cut(s)	93
Hsp92II	CATG	4 cut(s)	92, 422, 484, 535
HspAI	GCGC	1 cut(s)	280
Kpn2I	TCCGGA	1 cut(s)	430
Ksp22I	TGATCA	2 cut(s)	205, 519
Kzo9I	GATC	2 cut(s)	205, 519
LmnI	GCTCC	3 cut(s)	66, 415, 860
Lsp1109I	GCAGC	3 cut(s)	394, 908, 1195
LweI	GCATC	6 cut(s)	347, 534, 568, 631, 778, 1261
MaeI	CTAG	2 cut(s)	168, 615
MaeII	ACGT	1 cut(s)	93
MaeIII	GTNAC	3 cut(s)	211, 781, 1139
MalI	GATC	2 cut(s)	207, 521
MboI	GATC	2 cut(s)	205, 519
MboII	GAAGA	6 cut(s)	504, 539, 580, 583, 650, 1000
MhlI	GDGCHC	3 cut(s)	71, 614, 1123
MlsI	TGGCCA	3 cut(s)	42, 366, 1077
MluCI	AATT	8 cut(s)	4, 96, 180, 236, 472, 553, 746, 888
MluNI	TGGCCA	3 cut(s)	42, 366, 1077
MlyI	GAGTC	2 cut(s)	890, 1123
MmeI	TCCRAC	2 cut(s)	882, 1272
MnlI	CCTC	8 cut(s)	510, 628, 808, 990, 1030, 1084, 1095, 1096
Mox20I	TGGCCA	3 cut(s)	42, 366, 1077
Mph1103I	ATGCAT	1 cut(s)	90
MroI	TCCGGA	1 cut(s)	430
MscI	TGGCCA	3 cut(s)	42, 366, 1077
MseI	TTAA	5 cut(s)	141, 150, 338, 1041, 1223
MslI	CAYNNNNRTG	2 cut(s)	423, 707
Msp20I	TGGCCA	3 cut(s)	42, 366, 1077
MspI	CCGG	1 cut(s)	431
MspR9I	CCNGG	1 cut(s)	864
Mva1269I	GAATGC	1 cut(s)	841
MvaI	CCWGG	1 cut(s)	864
MwoI	GCNNNNNNNGC	1 cut(s)	764
NdeI	CATATG	1 cut(s)	1125
NdeII	GATC	2 cut(s)	205, 519
NlaIII	CATG	4 cut(s)	92, 422, 484, 535
NlaIV	GGNNCC	4 cut(s)	68, 537, 856, 868
NmuCI	GTSAC	3 cut(s)	211, 781, 1139
NsiI	ATGCAT	1 cut(s)	90
OliI	CACNNNNGTG	1 cut(s)	707
PctI	GAATGC	1 cut(s)	841
PfeI	GAWTC	4 cut(s)	299, 330, 448, 1178
PkrI	GCNGC	3 cut(s)	409, 923, 1210
PleI	GAGTC	2 cut(s)	889, 1123
PpsI	GAGTC	2 cut(s)	889, 1123
PpuMI	RGGWCCY	1 cut(s)	536
PshAI	GACNNNNGTC	1 cut(s)	381
PsiI	TTATAA	1 cut(s)	312
Psp5II	RGGWCCY	1 cut(s)	536
Psp6I	CCWGG	1 cut(s)	862
PspEI	GGTNACC	1 cut(s)	211
PspGI	CCWGG	1 cut(s)	862
PspN4I	GGNNCC	4 cut(s)	68, 537, 856, 868
PspPI	GGNCC	4 cut(s)	23, 428, 536, 970
PspPPI	RGGWCCY	1 cut(s)	536
PstI	CTGCAG	1 cut(s)	926
RsaI	GTAC	4 cut(s)	146, 627, 778, 1156
RsaNI	GTAC	4 cut(s)	145, 626, 777, 1155
RseI	CAYNNNNRTG	2 cut(s)	423, 707
SaqAI	TTAA	5 cut(s)	141, 150, 338, 1041, 1223
SatI	GCNGC	3 cut(s)	408, 922, 1209
Sau3AI	GATC	2 cut(s)	205, 519
Sau96I	GGNCC	4 cut(s)	23, 428, 536, 970
ScaI	AGTACT	1 cut(s)	146
SchI	GAGTC	2 cut(s)	890, 1123
ScrFI	CCNGG	1 cut(s)	864
SduI	GDGCHC	3 cut(s)	71, 614, 1123
SfaNI	GCATC	6 cut(s)	347, 534, 568, 631, 778, 1261
SfcI	CTRYAG	2 cut(s)	228, 922
SinI	GGWCC	3 cut(s)	23, 428, 536
SmiMI	CAYNNNNRTG	2 cut(s)	423, 707
Sse9I	AATT	8 cut(s)	4, 96, 180, 236, 472, 553, 746, 888
SspI	AATATT	2 cut(s)	682, 916
SspMI	CTAG	2 cut(s)	168, 615
StyD4I	CCNGG	1 cut(s)	862
StyI	CCWWGG	3 cut(s)	26, 456, 539
TaaI	ACNGT	5 cut(s)	163, 391, 400, 781, 1082
TaiI	ACGT	1 cut(s)	96
TasI	AATT	8 cut(s)	4, 96, 180, 236, 472, 553, 746, 888
TatI	WGTACW	2 cut(s)	144, 625
TfiI	GAWTC	4 cut(s)	299, 330, 448, 1178
Tru1I	TTAA	5 cut(s)	141, 150, 338, 1041, 1223
Tru9I	TTAA	5 cut(s)	141, 150, 338, 1041, 1223
TscAI	CASTG	1 cut(s)	1085
TseFI	GTSAC	3 cut(s)	211, 781, 1139
TseI	GCWGC	3 cut(s)	407, 921, 1208
Tsp45I	GTSAC	3 cut(s)	211, 781, 1139
TspDTI	ATGAA	6 cut(s)	17, 339, 672, 801, 911, 1149
TspRI	CASTG	1 cut(s)	1085
VpaK11BI	GGWCC	3 cut(s)	23, 428, 536
XapI	RAATTY	5 cut(s)	4, 180, 236, 746, 888
XbaI	TCTAGA	1 cut(s)	614
XspI	CTAG	2 cut(s)	168, 615
ZrmI	AGTACT	1 cut(s)	146
Zsp2I	ATGCAT	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.